Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0004540 Simmondsia chinensis HOM05D012758 ORTHO05D003154 2.1e-208 728.8 372 100.0
Sc25g0003060 Simmondsia chinensis HOM05D012758 ORTHO05D017119 2.2e-80 303.5 189 86.2
Sc19g0006670 Simmondsia chinensis HOM05D012758 ORTHO05D017119 2.9e-24 117.1 75 84.0
Sc23g0004030 Simmondsia chinensis HOM05D012758 ORTHO05D017119 5.0e-24 116.3 74 85.1
Sc11g0004880 Simmondsia chinensis HOM05D012758 ORTHO05D017119 1.2e-22 111.7 70 84.3
Sc02g0005470 Simmondsia chinensis HOM05D012758 ORTHO05D017119 8.0e-22 109.0 75 80.0
Sc25g0002960 Simmondsia chinensis HOM05D012758 ORTHO05D017119 1.8e-21 107.8 70 82.9
Sc19g0007560 Simmondsia chinensis HOM05D012758 ORTHO05D017119 7.0e-18 95.9 62 83.9
Sc13g0004230 Simmondsia chinensis HOM05D000106 ORTHO05D003154 5.9e-17 92.8 74 54.1
Sc06g0004150 Simmondsia chinensis HOM05D012758 ORTHO05D017119 1.9e-15 87.8 75 69.3
PSO170G5611 Papaver somniferum HOM05D000106 ORTHO05D003154 3.3e-12 77.0 74 45.9
PSO302G0068 Papaver somniferum HOM05D000106 ORTHO05D003154 3.3e-12 77.0 74 45.9
Nitab4.5_0001545g0010 Nicotiana tabacum HOM05D000106 ORTHO05D003154 7.5e-12 75.9 73 45.2
Hund22746 Selenicereus undatus HOM05D000106 ORTHO05D003154 1.3e-11 75.1 79 43.0
VMungo0720G1257 Vigna mungo HOM05D000106 ORTHO05D003154 1.3e-11 75.1 73 43.8
arahy.Tifrunner.gnm1.ann1.HR8ZWH Arachis hypogaea HOM05D000106 ORTHO05D003154 1.7e-11 74.7 76 40.8
arahy.Tifrunner.gnm1.ann1.QB4GTW Arachis hypogaea HOM05D000106 ORTHO05D003154 1.7e-11 74.7 76 40.8
AUR62038092 Chenopodium quinoa HOM05D000106 ORTHO05D003154 1.7e-11 74.7 76 43.4
Gohir.D09G216700 Gossypium hirsutum HOM05D000106 ORTHO05D003154 1.7e-11 74.7 73 39.7
Gorai.006G237200 Gossypium raimondii HOM05D000106 ORTHO05D003154 1.7e-11 74.7 73 39.7
COL.COLO4_06197 Corchorus olitorius HOM05D000106 ORTHO05D003154 2.2e-11 74.3 73 41.1
MELO3C014492.2 Cucumis melo HOM05D000106 ORTHO05D003154 2.8e-11 73.9 76 43.4
Phvul.007G054600 Phaseolus vulgaris HOM05D000106 ORTHO05D003154 2.8e-11 73.9 73 41.1
CSS0034544 Camellia sinensis var. sinensis HOM05D000106 ORTHO05D003154 3.7e-11 73.6 76 39.5
Peaxi162Scf00437g00514 Petunia axillaris HOM05D000106 ORTHO05D003154 3.7e-11 73.6 73 42.5
GSVIVG01017926001 Vitis vinifera HOM05D000106 ORTHO05D003154 3.7e-11 73.6 76 42.1
CAN.G668.9 Capsicum annuum HOM05D000106 ORTHO05D003154 6.3e-11 72.8 73 42.5
EL10As3g23359 Beta vulgaris HOM05D000106 ORTHO05D003154 1.1e-10 72.0 74 40.5
AUR62038641 Chenopodium quinoa HOM05D000106 ORTHO05D003154 1.1e-10 72.0 76 42.1
CsaV3_6G038270 Cucumis sativus L. HOM05D000106 ORTHO05D003154 1.1e-10 72.0 76 42.1
Manes.15G026600 Manihot esculenta HOM05D000106 ORTHO05D003154 1.1e-10 72.0 76 39.5
Sed0001724 Sechium edule HOM05D000106 ORTHO05D003154 1.1e-10 72.0 71 43.7
TPR.G5543 Trifolium pratense HOM05D000106 ORTHO05D003154 1.4e-10 71.6 73 41.1
Nitab4.5_0000260g0110 Nicotiana tabacum HOM05D000106 ORTHO05D003154 1.8e-10 71.2 73 42.5
Solyc09g075730.3 Solanum lycopersicum HOM05D000106 ORTHO05D003154 1.8e-10 71.2 73 41.1
Sopen09g030540 Solanum pennellii HOM05D000106 ORTHO05D003154 1.8e-10 71.2 73 41.1
ClCG06G005990 Citrullus lanatus HOM05D000106 ORTHO05D003154 2.4e-10 70.9 102 35.3
Glyma.10G250000 Glycine max HOM05D000106 ORTHO05D003154 2.4e-10 70.9 76 39.5
Manes.03G181300 Manihot esculenta HOM05D000106 ORTHO05D003154 2.4e-10 70.9 73 39.7
PGSC0003DMG400031802 Solanum tuberosum HOM05D000106 ORTHO05D003154 3.1e-10 70.5 73 41.1
MSTRG.21843 Avicennia marina HOM05D000106 ORTHO05D003154 4.1e-10 70.1 76 36.8
CANSAT78G1182 Cannabis sativa HOM05D000106 ORTHO05D003154 4.1e-10 70.1 73 39.7
CDE04G0946 Ceratophyllum demersum HOM05D000106 ORTHO05D003154 4.1e-10 70.1 75 38.7
Glyma.20G143600 Glycine max HOM05D000106 ORTHO05D003154 4.1e-10 70.1 76 39.5
Medtr1g104850 Medicago truncatula HOM05D000106 ORTHO05D003154 4.1e-10 70.1 73 41.1
Os03g0184400 Oryza sativa ssp. japonica HOM05D000106 ORTHO05D003154 4.1e-10 70.1 75 36.0
Psat6g208760 Pisum sativum HOM05D000106 ORTHO05D003154 4.1e-10 70.1 73 38.4
Rhsim04G0205000 Rhododendron simsii HOM05D000106 ORTHO05D003154 4.1e-10 70.1 76 38.2
Lalb_Chr02g0140541 Lupinus albus HOM05D000106 ORTHO05D003154 5.3e-10 69.7 73 41.1
Migut.N00170 Erythranthe guttata HOM05D000106 ORTHO05D003154 7.0e-10 69.3 73 37.0
Gohir.A02G117200 Gossypium hirsutum HOM05D000106 ORTHO05D003154 9.1e-10 68.9 73 37.0
Gohir.A09G214200 Gossypium hirsutum HOM05D000106 ORTHO05D003154 9.1e-10 68.9 73 37.0
Gohir.D05G172900 Gossypium hirsutum HOM05D000106 ORTHO05D003154 9.1e-10 68.9 73 37.0
Ah.13g073930 Amaranthus hybridus HOM05D000106 ORTHO05D003154 1.2e-09 68.6 71 43.7
Aqoxy2G03347 Aquilegia oxysepala HOM05D000106 ORTHO05D003154 1.2e-09 68.6 73 37.0
CiPaw.01G163600 Carya illinoinensis HOM05D000106 ORTHO05D003154 1.2e-09 68.6 73 41.1
Ca_10925_v3 Cicer arietinum L. HOM05D000106 ORTHO05D003154 1.2e-09 68.6 73 39.7
Ciclev10004756m.g Citrus clementina HOM05D000106 ORTHO05D003154 1.2e-09 68.6 76 38.2
Lj5g0007179 Lotus japonicus HOM05D000106 ORTHO05D003154 1.2e-09 68.6 73 39.7
Nn1g02241 Nelumbo nucifera HOM05D000106 ORTHO05D003154 1.2e-09 68.6 73 37.0
Potri.010G090800 Populus trichocarpa HOM05D000106 ORTHO05D003154 1.2e-09 68.6 76 38.2
Sabra10G0052700 Salix brachista HOM05D000106 ORTHO05D003154 1.2e-09 68.6 76 38.2
Hund12161 Selenicereus undatus HOM05D000106 ORTHO05D003154 1.2e-09 68.6 72 41.7
TAR633G1877 Trochodendron aralioides HOM05D000106 ORTHO05D003154 1.6e-09 68.2 76 35.5
Eucgr.H03552 Eucalyptus grandis HOM05D000106 ORTHO05D003154 2.0e-09 67.8 73 38.4
Thhalv10020522m.g Eutrema salsugineum HOM05D000106 ORTHO05D003154 2.0e-09 67.8 76 38.2
Gohir.A05G277766 Gossypium hirsutum HOM05D000106 ORTHO05D003154 2.0e-09 67.8 72 36.1
PGR004G1792 Punica granatum HOM05D000106 ORTHO05D003154 2.0e-09 67.8 71 38.0
MSTRG.24748 Avicennia marina HOM05D000106 ORTHO05D003154 2.7e-09 67.4 76 38.2
Haze_00927 Corylus avellana HOM05D000106 ORTHO05D003154 3.5e-09 67.0 73 37.0
TWI09G0906 Tripterygium wilfordii HOM05D000106 ORTHO05D003154 3.5e-09 67.0 73 39.7
CiPaw.02G095200 Carya illinoinensis HOM05D000106 ORTHO05D003154 4.5e-09 66.6 73 38.4
CDE12G0439 Ceratophyllum demersum HOM05D000106 ORTHO05D003154 4.5e-09 66.6 74 37.8
DCAR_027183 Daucus carota HOM05D000106 ORTHO05D003154 4.5e-09 66.6 73 34.2
HanXRQChr09g0259231 Helianthus annuus HOM05D000106 ORTHO05D003154 4.5e-09 66.6 71 36.6
MD16G1188700 Malus domestica HOM05D000106 ORTHO05D003154 4.5e-09 66.6 76 36.8
Prupe.1G155400 Prunus persica HOM05D000106 ORTHO05D003154 4.5e-09 66.6 76 36.8
THA.LOC104822299 Tarenaya hassleriana HOM05D000106 ORTHO05D003154 4.5e-09 66.6 75 37.3
Zm00001eb401620 Zea mays HOM05D000106 ORTHO05D003154 4.5e-09 66.6 75 34.7
Cc03_g03460 Coffea canephora HOM05D000106 ORTHO05D003154 5.9e-09 66.2 71 35.2
Gohir.D01G021100 Gossypium hirsutum HOM05D000106 ORTHO05D003154 5.9e-09 66.2 74 36.5
Gorai.002G023600 Gossypium raimondii HOM05D000106 ORTHO05D003154 5.9e-09 66.2 74 36.5
PGR142G3269 Punica granatum HOM05D000106 ORTHO05D003154 5.9e-09 66.2 78 34.6
THA.LOC104818781 Tarenaya hassleriana HOM05D000106 ORTHO05D003154 5.9e-09 66.2 76 35.5
arahy.Tifrunner.gnm1.ann1.S19N9I Arachis hypogaea HOM05D000106 ORTHO05D003154 7.7e-09 65.9 83 34.9
Cpa.g.sc8.323 Carica papaya HOM05D000106 ORTHO05D003154 7.7e-09 65.9 76 36.8
Cfa015616 Carpinus fangiana HOM05D000106 ORTHO05D003154 7.7e-09 65.9 73 37.0
Lsat_1_v5_gn_7_86920 Lactuca sativa HOM05D000106 ORTHO05D003154 7.7e-09 65.9 71 42.3
arahy.Tifrunner.gnm1.ann1.0NLM07 Arachis hypogaea HOM05D000106 ORTHO05D003154 1.0e-08 65.5 75 34.7
Eucgr.I01156 Eucalyptus grandis HOM05D000106 ORTHO05D003154 1.0e-08 65.5 78 34.6
Gohir.A01G023100 Gossypium hirsutum HOM05D000106 ORTHO05D003154 1.0e-08 65.5 73 37.0
Thecc.04G227200 Theobroma cacao HOM05D000106 ORTHO05D003154 1.0e-08 65.5 68 41.2
Duzib052G0746 Durio zibethinus HOM05D000106 ORTHO05D003154 1.3e-08 65.1 70 37.1
QL06p003366 Quercus lobata HOM05D000106 ORTHO05D003154 1.3e-08 65.1 73 41.1
TPR.G28488 Trifolium pratense HOM05D000106 ORTHO05D003154 1.3e-08 65.1 75 34.7
TWI53G2129 Tripterygium wilfordii HOM05D000106 ORTHO05D003154 1.3e-08 65.1 77 37.7
AL3G16800 Arabidopsis lyrata HOM05D000106 ORTHO05D003154 1.7e-08 64.7 76 36.8
Gohir.D02G175550 Gossypium hirsutum HOM05D000106 ORTHO05D003154 1.7e-08 64.7 73 35.6
ATR0626G341 Amborella trichopoda HOM05D000106 ORTHO05D003154 2.2e-08 64.3 73 37.0
Ciclev10030280m.g Citrus clementina HOM05D000106 ORTHO05D003154 2.2e-08 64.3 75 36.0
Lj6A597G84 Lonicera japonica HOM05D000106 ORTHO05D003154 2.2e-08 64.3 76 34.2
SGA_v2.0_scaffold10G05108 Striga asiatica HOM05D000106 ORTHO05D003154 2.2e-08 64.3 73 35.6
CDE05G0755 Ceratophyllum demersum HOM05D000106 ORTHO05D003154 2.9e-08 63.9 74 36.5
Ca_18681_v3 Cicer arietinum L. HOM05D000106 ORTHO05D003154 2.9e-08 63.9 75 33.3
Oeu037550.2 Olea europaea HOM05D000106 ORTHO05D003154 2.9e-08 63.9 76 36.8
Oeu037552.1 Olea europaea HOM05D000106 ORTHO05D003154 2.9e-08 63.9 76 36.8
Actinidia23489 Actinidia chinensis HOM05D000106 ORTHO05D003154 3.8e-08 63.5 120 28.3
BolC1t05644H Brassica oleracea HOM05D000106 ORTHO05D003154 3.8e-08 63.5 76 35.5
CARHR080500 Cardamine hirsuta HOM05D000106 ORTHO05D003154 3.8e-08 63.5 76 36.8
PSO017G5362 Papaver somniferum HOM05D000106 ORTHO05D003154 3.8e-08 63.5 76 32.9
PSO170G1553 Papaver somniferum HOM05D000106 ORTHO05D003154 3.8e-08 63.5 76 32.9
BraA01t04456Z Brassica rapa HOM05D000106 ORTHO05D003154 5.0e-08 63.2 76 35.5
AT3G05990 Arabidopsis thaliana HOM05D000106 ORTHO05D003154 6.5e-08 62.8 76 35.5
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 6.5e-08 62.8 73 34.2
SalBow5G3109 Salvia bowleyana HOM05D000106 ORTHO05D003154 6.5e-08 62.8 73 34.2
TAR628G0939 Trochodendron aralioides HOM05D000106 ORTHO05D003154 6.5e-08 62.8 78 35.9
ATR0100G041 Amborella trichopoda HOM05D000106 ORTHO05D003154 8.5e-08 62.4 73 32.9
FvH4_4g15050 Fragaria vesca HOM05D000106 ORTHO05D003154 8.5e-08 62.4 82 35.4
FAN12G0571 Fragaria x ananassa HOM05D000106 ORTHO05D003154 8.5e-08 62.4 82 35.4
FAN17G0612 Fragaria x ananassa HOM05D000106 ORTHO05D003154 8.5e-08 62.4 82 35.4
RcHm_v2.0_Chr4g0416811 Rosa chinensis HOM05D000106 ORTHO05D003154 8.5e-08 62.4 76 36.8
Aa31LG5G16460 Aethionema arabicum HOM05D000106 ORTHO05D003154 1.1e-07 62.0 76 35.5
BcaC05g30071 Brassica carinata HOM05D000106 ORTHO05D003154 1.1e-07 62.0 76 34.2
A05p42040 Brassica napus HOM05D000106 ORTHO05D003154 1.1e-07 62.0 76 34.2
C05p61270 Brassica napus HOM05D000106 ORTHO05D003154 1.1e-07 62.0 76 34.2
BolC5t34786H Brassica oleracea HOM05D000106 ORTHO05D003154 1.1e-07 62.0 76 34.2
BraA05t22924Z Brassica rapa HOM05D000106 ORTHO05D003154 1.1e-07 62.0 76 34.2
Glyma.07G212200 Glycine max HOM05D000106 ORTHO05D003154 1.1e-07 62.0 73 32.9
MBI17_g31752_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D003154 1.1e-07 62.0 73 30.1
HPP92_009384 Vanilla planifolia HOM05D000106 ORTHO05D003154 1.5e-07 61.6 79 30.4
Lj4g0007024 Lotus japonicus HOM05D000106 ORTHO05D003154 1.9e-07 61.2 75 33.3
RcHm_v2.0_Chr6g0257071 Rosa chinensis HOM05D000106 ORTHO05D003154 1.9e-07 61.2 73 34.2
GSVIVG01031750001 Vitis vinifera HOM05D000106 ORTHO05D003154 1.9e-07 61.2 78 29.5
Duzib052G1100 Durio zibethinus HOM05D000106 ORTHO05D003154 2.5e-07 60.8 78 32.1
FAN22G1799 Fragaria x ananassa HOM05D000106 ORTHO05D003154 2.5e-07 60.8 76 34.2
Nn3g20712 Nelumbo nucifera HOM05D000106 ORTHO05D003154 2.5e-07 60.8 85 34.1
Potri.008G150200 Populus trichocarpa HOM05D000106 ORTHO05D003154 2.5e-07 60.8 76 34.2
Sp3g04930 Schrenkiella parvula HOM05D000106 ORTHO05D003154 2.5e-07 60.8 76 32.9
Sp3g17300 Schrenkiella parvula HOM05D000106 ORTHO05D003154 2.5e-07 60.8 71 33.8
Thecc.02G100500 Theobroma cacao HOM05D000106 ORTHO05D003154 2.5e-07 60.8 78 34.6
ClCG02G005890 Citrullus lanatus HOM05D000106 ORTHO05D003154 3.2e-07 60.5 76 32.9
Glyma.02G132800 Glycine max HOM05D000106 ORTHO05D003154 3.2e-07 60.5 73 32.9
Phvul.003G292500 Phaseolus vulgaris HOM05D000106 ORTHO05D003154 3.2e-07 60.5 75 30.7
Eucgr.J02862 Eucalyptus grandis HOM05D000106 ORTHO05D000160 4.2e-07 60.1 71 38.0
Nn1g02240 Nelumbo nucifera HOM05D000106 ORTHO05D003154 4.2e-07 60.1 81 32.1
HPP92_011811 Vanilla planifolia HOM05D000106 ORTHO05D003154 4.2e-07 60.1 151 29.1
CANSAT25G1736 Cannabis sativa HOM05D000106 ORTHO05D003154 7.2e-07 59.3 78 29.5
Thhalv10022285m.g Eutrema salsugineum HOM05D000106 ORTHO05D003154 7.2e-07 59.3 70 34.3
Os05g0393100 Oryza sativa ssp. japonica HOM05D000106 ORTHO05D003154 7.2e-07 59.3 68 36.8
Carub.0003s0540 Capsella rubella HOM05D000106 ORTHO05D003154 9.4e-07 58.9 76 31.6
Oeu007286.2 Olea europaea HOM05D000106 ORTHO05D003154 9.4e-07 58.9 73 37.0
A05p30410 Brassica napus HOM05D000106 ORTHO05D003154 1.2e-06 58.5 73 31.5
Lsat_1_v5_gn_5_148481 Lactuca sativa HOM05D000106 ORTHO05D003154 1.2e-06 58.5 73 30.1
Lalb_Chr05g0219141 Lupinus albus HOM05D000106 ORTHO05D003154 1.2e-06 58.5 76 32.9
MD05G1080300 Malus domestica HOM05D000106 ORTHO05D003154 1.2e-06 58.5 75 29.3
BcaB06g25979 Brassica carinata HOM05D000106 ORTHO05D003154 1.6e-06 58.2 73 30.1
BcaC05g28521 Brassica carinata HOM05D000106 ORTHO05D003154 2.1e-06 57.8 73 31.5
C05p46020 Brassica napus HOM05D000106 ORTHO05D003154 2.1e-06 57.8 73 31.5
Carub.0003s1906 Capsella rubella HOM05D000106 ORTHO05D003154 2.1e-06 57.8 73 31.5
Gohir.A01G006800 Gossypium hirsutum HOM05D000106 ORTHO05D003154 2.1e-06 57.8 82 32.9
Lj9A358T45 Lonicera japonica HOM05D000106 ORTHO05D003154 2.1e-06 57.8 71 32.4
BraA05t21879Z Brassica rapa HOM05D000106 ORTHO05D003154 2.7e-06 57.4 73 31.5
BolC5t33328H Brassica oleracea HOM05D000106 ORTHO05D003154 3.6e-06 57.0 73 31.5
Manes.07G082800 Manihot esculenta HOM05D000106 ORTHO05D003154 3.6e-06 57.0 76 31.6
TWI79G1383 Tripterygium wilfordii HOM05D000106 ORTHO05D003154 3.6e-06 57.0 78 30.8
VMungo0251G2351 Vigna mungo HOM05D000106 ORTHO05D003154 3.6e-06 57.0 102 29.4
BraA08t35464Z Brassica rapa HOM05D000106 ORTHO05D000160 4.7e-06 56.6 83 32.5
Migut.B00345 Erythranthe guttata HOM05D000106 ORTHO05D003154 4.7e-06 56.6 73 32.9
SHI05360 Sapria himalayana HOM05D000106 ORTHO05D003154 4.7e-06 56.6 76 30.3
SGA_v2.0_scaffold90G27660 Striga asiatica HOM05D000106 ORTHO05D003154 4.7e-06 56.6 73 32.9
AT3G19230 Arabidopsis thaliana HOM05D000106 ORTHO05D003154 6.1e-06 56.2 73 31.5
arahy.Tifrunner.gnm1.ann1.A28PKT Arachis hypogaea HOM05D000106 ORTHO05D000160 8.0e-06 55.8 72 36.1
CARHR094640 Cardamine hirsuta HOM05D000106 ORTHO05D003154 8.0e-06 55.8 73 32.9
Cpa.g.sc62.14 Carica papaya HOM05D000106 ORTHO05D003154 8.0e-06 55.8 75 30.7
ClCG09G000390 Citrullus lanatus HOM05D000106 ORTHO05D000160 8.0e-06 55.8 72 36.1
Rhsim05G0083800 Rhododendron simsii HOM05D000106 ORTHO05D003154 8.0e-06 55.8 79 30.4


User provided reference genes

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