Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0004140 Simmondsia chinensis HOM05D003675 ORTHO05D004318 3.1e-34 147.9 75 100.0
Ciclev10014154m.g Citrus clementina HOM05D003675 ORTHO05D004318 4.7e-22 107.5 84 70.2
AUR62014439 Chenopodium quinoa HOM05D003675 ORTHO05D004318 1.4e-21 105.9 84 70.2
CiPaw.09G116500 Carya illinoinensis HOM05D003675 ORTHO05D004318 1.8e-21 105.5 84 67.9
AUR62015052 Chenopodium quinoa HOM05D003675 ORTHO05D004318 1.8e-21 105.5 84 70.2
Rhsim13G0119800 Rhododendron simsii HOM05D003675 ORTHO05D004318 1.8e-21 105.5 84 67.9
AUR62034562 Chenopodium quinoa HOM05D003675 ORTHO05D004318 2.3e-21 105.1 84 69.0
Manes.14G134400 Manihot esculenta HOM05D003675 ORTHO05D004318 2.3e-21 105.1 84 67.9
COL.COLO4_17678 Corchorus olitorius HOM05D003675 ORTHO05D004318 3.0e-21 104.8 84 69.0
FAN16G2870 Fragaria x ananassa HOM05D003675 ORTHO05D004318 3.0e-21 104.8 84 67.9
Potri.001G357600 Populus trichocarpa HOM05D003675 ORTHO05D004318 3.0e-21 104.8 84 67.9
Potri.011G090900 Populus trichocarpa HOM05D003675 ORTHO05D004318 3.0e-21 104.8 84 67.9
RcHm_v2.0_Chr5g0015611 Rosa chinensis HOM05D003675 ORTHO05D004318 3.0e-21 104.8 84 67.9
Thecc.02G011900 Theobroma cacao HOM05D003675 ORTHO05D004318 3.0e-21 104.8 84 67.9
vmacro03400 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 3.0e-21 104.8 84 67.9
FvH4_3g09910 Fragaria vesca HOM05D003675 ORTHO05D004318 3.9e-21 104.4 84 66.7
FAN11G0336 Fragaria x ananassa HOM05D003675 ORTHO05D004318 3.9e-21 104.4 84 66.7
Lj1C1164G14 Lonicera japonica HOM05D003675 ORTHO05D004318 5.2e-21 104.0 84 66.7
GSVIVG01021607001 Vitis vinifera HOM05D003675 ORTHO05D004318 5.2e-21 104.0 84 66.7
Aa31LG10G6660 Aethionema arabicum HOM05D003675 ORTHO05D004318 6.7e-21 103.6 84 66.7
Ah.12g053620 Amaranthus hybridus HOM05D003675 ORTHO05D004318 6.7e-21 103.6 84 67.9
Cc09_g08810 Coffea canephora HOM05D003675 ORTHO05D004318 6.7e-21 103.6 84 66.7
Eucgr.D00196 Eucalyptus grandis HOM05D003675 ORTHO05D004318 8.8e-21 103.2 84 66.7
FAN21G3951 Fragaria x ananassa HOM05D003675 ORTHO05D004318 8.8e-21 103.2 84 65.5
HanXRQChr08g0209981 Helianthus annuus HOM05D003675 ORTHO05D004318 8.8e-21 103.2 84 67.9
Nn8g39842 Nelumbo nucifera HOM05D003675 ORTHO05D004318 8.8e-21 103.2 84 66.7
Sabra11G0086100 Salix brachista HOM05D003675 ORTHO05D004318 8.8e-21 103.2 84 67.9
Cfa000847 Carpinus fangiana HOM05D003675 ORTHO05D004318 1.1e-20 102.8 84 67.9
Hund06713 Selenicereus undatus HOM05D003675 ORTHO05D004318 1.1e-20 102.8 84 69.0
Haze_05761 Corylus avellana HOM05D003675 ORTHO05D004318 1.5e-20 102.4 84 66.7
PSO675G2215 Papaver somniferum HOM05D003675 ORTHO05D004318 1.5e-20 102.4 84 64.3
PSO675G7364 Papaver somniferum HOM05D003675 ORTHO05D004318 1.5e-20 102.4 84 64.3
Prupe.4G088900 Prunus persica HOM05D003675 ORTHO05D004318 1.5e-20 102.4 84 67.9
Sabra16G0235300 Salix brachista HOM05D003675 ORTHO05D004318 1.5e-20 102.4 83 66.3
Sc24g0001490 Simmondsia chinensis HOM05D003675 ORTHO05D004318 1.5e-20 102.4 84 69.0
SGA_v2.0_scaffold51G18648 Striga asiatica HOM05D003675 ORTHO05D004318 1.5e-20 102.4 84 65.5
Actinidia07469 Actinidia chinensis HOM05D003675 ORTHO05D004318 2.0e-20 102.1 84 65.5
Duzib052G0595 Durio zibethinus HOM05D003675 ORTHO05D004318 2.0e-20 102.1 84 65.5
ECA233G3702 Erigeron canadensis HOM05D003675 ORTHO05D004318 2.0e-20 102.1 84 66.7
Manes.06G060500 Manihot esculenta HOM05D003675 ORTHO05D004318 2.0e-20 102.1 84 65.5
RcHm_v2.0_Chr5g0015801 Rosa chinensis HOM05D003675 ORTHO05D004318 2.0e-20 102.1 84 65.5
EL10Ac8g20233 Beta vulgaris HOM05D003675 ORTHO05D004318 2.6e-20 101.7 82 68.3
CSS0048327 Camellia sinensis var. sinensis HOM05D003675 ORTHO05D004318 2.6e-20 101.7 84 65.5
Cpa.g.sc17.78 Carica papaya HOM05D003675 ORTHO05D004318 2.6e-20 101.7 84 66.7
Gohir.A12G045566 Gossypium hirsutum HOM05D003675 ORTHO05D004318 2.6e-20 101.7 84 64.3
Gohir.D12G044700 Gossypium hirsutum HOM05D003675 ORTHO05D004318 2.6e-20 101.7 84 64.3
Gorai.008G047100 Gossypium raimondii HOM05D003675 ORTHO05D004318 2.6e-20 101.7 84 64.3
MBI18_g11285_MAGBIO Magnolia biondii HOM05D003675 ORTHO05D004318 2.6e-20 101.7 84 64.3
MBI18_g34277_MAGBIO Magnolia biondii HOM05D003675 ORTHO05D004318 2.6e-20 101.7 84 64.3
PGR083G0730 Punica granatum HOM05D003675 ORTHO05D004318 2.6e-20 101.7 84 65.5
VMungo1309G0958 Vigna mungo HOM05D003675 ORTHO05D004318 2.6e-20 101.7 84 65.5
Aqoxy3G00253 Aquilegia oxysepala HOM05D003675 ORTHO05D004318 3.3e-20 101.3 84 65.5
Ca_02515_v3 Cicer arietinum L. HOM05D003675 ORTHO05D004318 3.3e-20 101.3 84 65.5
DCAR_003868 Daucus carota HOM05D003675 ORTHO05D004318 3.3e-20 101.3 84 66.7
Dinv15908 Davidia involucrata HOM05D003675 ORTHO05D004318 3.3e-20 101.3 84 66.7
Glyma.09G085300 Glycine max HOM05D003675 ORTHO05D004318 3.3e-20 101.3 84 66.7
Lalb_Chr08g0233231 Lupinus albus HOM05D003675 ORTHO05D004318 3.3e-20 101.3 84 64.3
Lalb_Chr11g0073421 Lupinus albus HOM05D003675 ORTHO05D004318 3.3e-20 101.3 84 64.3
Psat1g019680 Pisum sativum HOM05D003675 ORTHO05D004318 3.3e-20 101.3 84 66.7
Lsat_1_v5_gn_4_241 Lactuca sativa HOM05D003675 ORTHO05D004318 4.4e-20 100.9 84 65.5
CAN.G1058.33 Capsicum annuum HOM05D003675 ORTHO05D004318 5.7e-20 100.5 84 65.5
CiPaw.10G086400 Carya illinoinensis HOM05D003675 ORTHO05D004318 5.7e-20 100.5 84 65.5
Medtr2g048510 Medicago truncatula HOM05D003675 ORTHO05D004318 5.7e-20 100.5 84 64.3
Nitab4.5_0000100g0150 Nicotiana tabacum HOM05D003675 ORTHO05D004318 5.7e-20 100.5 84 65.5
Nitab4.5_0006732g0010 Nicotiana tabacum HOM05D003675 ORTHO05D004318 5.7e-20 100.5 84 65.5
Phvul.009G216800 Phaseolus vulgaris HOM05D003675 ORTHO05D004318 5.7e-20 100.5 84 64.3
Solyc02g021620.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 5.7e-20 100.5 84 65.5
Sopen02g006170 Solanum pennellii HOM05D003675 ORTHO05D004318 5.7e-20 100.5 84 65.5
PGSC0003DMG400003173 Solanum tuberosum HOM05D003675 ORTHO05D004318 5.7e-20 100.5 84 65.5
Duzib248G0664 Durio zibethinus HOM05D003675 ORTHO05D004318 7.4e-20 100.1 84 64.3
Glyma.15G193400 Glycine max HOM05D003675 ORTHO05D004318 7.4e-20 100.1 84 65.5
QL05p053600 Quercus lobata HOM05D003675 ORTHO05D004318 7.4e-20 100.1 83 65.1
ClCG03G006310 Citrullus lanatus HOM05D003675 ORTHO05D004318 9.7e-20 99.8 84 66.7
MELO3C002803.2 Cucumis melo HOM05D003675 ORTHO05D004318 9.7e-20 99.8 84 66.7
CsaV3_1G037400 Cucumis sativus L. HOM05D003675 ORTHO05D004318 9.7e-20 99.8 84 66.7
Oeu015186.1 Olea europaea HOM05D003675 ORTHO05D004318 9.7e-20 99.8 84 64.3
Sed0017115 Sechium edule HOM05D003675 ORTHO05D004318 9.7e-20 99.8 84 64.3
Migut.H01338 Erythranthe guttata HOM05D003675 ORTHO05D004318 1.3e-19 99.4 84 64.3
Nn2g15671 Nelumbo nucifera HOM05D003675 ORTHO05D004318 1.3e-19 99.4 84 65.5
TAR627G0374 Trochodendron aralioides HOM05D003675 ORTHO05D004318 1.3e-19 99.4 84 64.3
arahy.Tifrunner.gnm1.ann1.119T42 Arachis hypogaea HOM05D003675 ORTHO05D004318 1.7e-19 99.0 84 64.3
arahy.Tifrunner.gnm1.ann1.71J8LW Arachis hypogaea HOM05D003675 ORTHO05D004318 1.7e-19 99.0 84 64.3
arahy.Tifrunner.gnm1.ann1.F8HCHG Arachis hypogaea HOM05D003675 ORTHO05D004318 1.7e-19 99.0 84 64.3
Gohir.A03G216500 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.7e-19 99.0 87 65.5
Gohir.D02G238100 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.7e-19 99.0 87 65.5
Gohir.D02G239100 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.7e-19 99.0 87 65.5
Gorai.005G266600 Gossypium raimondii HOM05D003675 ORTHO05D004318 1.7e-19 99.0 87 65.5
TWI53G0160 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 1.7e-19 99.0 84 64.3
TWI73G0281 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 1.7e-19 99.0 84 64.3
Duzib132G0867 Durio zibethinus HOM05D003675 ORTHO05D004318 2.2e-19 98.6 84 63.1
Lj6g0000180 Lotus japonicus HOM05D003675 ORTHO05D004318 2.2e-19 98.6 84 64.3
CANSAT35G1002 Cannabis sativa HOM05D003675 ORTHO05D004318 2.8e-19 98.2 84 65.5
DCAR_027870 Daucus carota HOM05D003675 ORTHO05D004318 2.8e-19 98.2 84 64.3
Lj2A328G59 Lonicera japonica HOM05D003675 ORTHO05D004318 2.8e-19 98.2 84 63.1
MD05G1275000 Malus domestica HOM05D003675 ORTHO05D004318 2.8e-19 98.2 84 64.3
MD10G1254500 Malus domestica HOM05D003675 ORTHO05D004318 2.8e-19 98.2 84 64.3
Sed0018861 Sechium edule HOM05D003675 ORTHO05D004318 2.8e-19 98.2 84 65.5
Atru.chr10.917 Acer truncatum HOM05D003675 ORTHO05D004318 3.7e-19 97.8 84 63.1
Atru.chr10.925 Acer truncatum HOM05D003675 ORTHO05D004318 3.7e-19 97.8 84 63.1
HPP92_010716 Vanilla planifolia HOM05D003675 ORTHO05D004318 3.7e-19 97.8 84 65.5
FAN25G0162 Fragaria x ananassa HOM05D003675 ORTHO05D004318 6.3e-19 97.1 80 66.2
Os01g0304100 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 6.3e-19 97.1 84 65.5
BcaB03g13829 Brassica carinata HOM05D003675 ORTHO05D004318 1.1e-18 96.3 84 61.9
A07p09940 Brassica napus HOM05D003675 ORTHO05D004318 1.1e-18 96.3 84 61.9
A08p24460 Brassica napus HOM05D003675 ORTHO05D004318 1.1e-18 96.3 84 61.9
BraA07t28783Z Brassica rapa HOM05D003675 ORTHO05D004318 1.1e-18 96.3 84 61.9
BraA08t34402Z Brassica rapa HOM05D003675 ORTHO05D004318 1.1e-18 96.3 84 61.9
Peaxi162Scf00155g01015 Petunia axillaris HOM05D003675 ORTHO05D004318 1.1e-18 96.3 83 62.7
BolC3t19930H Brassica oleracea HOM05D003675 ORTHO05D004318 1.8e-18 95.5 84 61.9
C07p15140 Brassica napus HOM05D003675 ORTHO05D004318 2.4e-18 95.1 84 60.7
BolC7t42018H Brassica oleracea HOM05D003675 ORTHO05D004318 2.4e-18 95.1 84 60.7
Aa31LG6G11710 Aethionema arabicum HOM05D003675 ORTHO05D004318 3.1e-18 94.7 84 60.7
PGSC0003DMG400021101 Solanum tuberosum HOM05D003675 ORTHO05D004318 3.1e-18 94.7 84 63.1
AL1G44390 Arabidopsis lyrata HOM05D003675 ORTHO05D004318 4.1e-18 94.4 84 60.7
AT1G30450 Arabidopsis thaliana HOM05D003675 ORTHO05D004318 4.1e-18 94.4 84 60.7
BcaC01g00192 Brassica carinata HOM05D003675 ORTHO05D004318 4.1e-18 94.4 84 60.7
BcaNung05260 Brassica carinata HOM05D003675 ORTHO05D004318 4.1e-18 94.4 84 60.7
C03p76760 Brassica napus HOM05D003675 ORTHO05D004318 4.1e-18 94.4 84 60.7
CARHR029820 Cardamine hirsuta HOM05D003675 ORTHO05D004318 4.1e-18 94.4 84 60.7
Thhalv10006695m.g Eutrema salsugineum HOM05D003675 ORTHO05D004318 4.1e-18 94.4 84 60.7
Os08g0323700 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 4.1e-18 94.4 84 59.5
Sp1g26270 Schrenkiella parvula HOM05D003675 ORTHO05D004318 4.1e-18 94.4 84 60.7
Carub.0001s2862 Capsella rubella HOM05D003675 ORTHO05D004318 5.3e-18 94.0 84 60.7
Solyc02g070290.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 5.3e-18 94.0 84 63.1
Sopen02g019380 Solanum pennellii HOM05D003675 ORTHO05D004318 5.3e-18 94.0 84 63.1
Lsat_1_v5_gn_8_147381 Lactuca sativa HOM05D003675 ORTHO05D004318 9.1e-18 93.2 78 65.4
CAN.G660.39 Capsicum annuum HOM05D003675 ORTHO05D004318 1.6e-17 92.4 84 60.7
Nitab4.5_0007290g0030 Nicotiana tabacum HOM05D003675 ORTHO05D004318 2.0e-17 92.0 84 61.9
Zm00001eb286030 Zea mays HOM05D003675 ORTHO05D004318 1.0e-16 89.7 82 58.5
SEGI_15305 Sequoiadendron giganteum HOM05D003675 ORTHO05D004318 5.0e-16 87.4 81 61.7
ATR1098G088 Amborella trichopoda HOM05D003675 ORTHO05D004318 6.5e-16 87.0 77 61.0
Zm00001eb197200 Zea mays HOM05D003675 ORTHO05D004318 6.5e-16 87.0 84 54.8
CDE04G1522 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 2.5e-15 85.1 81 59.3
SHI20675 Sapria himalayana HOM05D003675 ORTHO05D000023 5.5e-15 84.0 76 64.5
Zm00001eb347460 Zea mays HOM05D003675 ORTHO05D004318 9.4e-15 83.2 77 58.4
unitig_37.g12081 Utricularia gibba HOM05D003675 ORTHO05D004318 1.2e-14 82.8 78 61.5
vmacro23352 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 2.7e-14 81.6 70 67.1
TAR626G0983 Trochodendron aralioides HOM05D003675 ORTHO05D004318 3.6e-14 81.3 70 67.1
HanXRQChr12g0385671 Helianthus annuus HOM05D003675 ORTHO05D004318 8.0e-14 80.1 79 58.2
HPP92_017213 Vanilla planifolia HOM05D003675 ORTHO05D004318 8.0e-14 80.1 76 57.9
Mapoly0050s0083 Marchantia polymorpha HOM05D003675 ORTHO05D004318 2.3e-13 78.6 80 55.0
AagrBONN_evm.TU.Sc2ySwM_344.2138 Anthoceros agrestis HOM05D003675 ORTHO05D004318 3.0e-13 78.2 75 58.7
SMO141G0147 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 3.0e-13 78.2 75 57.3
Pp3c13_9730 Physcomitrium patens HOM05D003675 ORTHO05D004318 3.4e-12 74.7 83 51.8
Pp3c13_9737 Physcomitrium patens HOM05D003675 ORTHO05D004318 3.4e-12 74.7 83 51.8
Pp3c2_27310 Physcomitrium patens HOM05D003675 ORTHO05D004318 3.7e-11 71.2 76 53.9
Dinv32189 Davidia involucrata HOM05D003675 ORTHO05D004318 1.8e-10 68.9 63 61.9
CBR_g27771 Chara braunii HOM05D003675 ORTHO05D004318 2.4e-10 68.6 76 46.1
Pp3c1_10530 Physcomitrium patens HOM05D003675 ORTHO05D004318 4.1e-10 67.8 76 52.6
CDE07G0962 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 5.9e-09 63.9 59 61.0
AUR62041920 Chenopodium quinoa HOM05D003142 ORTHO05D003600 2.2e-08 62.0 56 66.1
SGA_v2.0_scaffold106G30664 Striga asiatica HOM05D003675 ORTHO05D004318 2.9e-08 61.6 41 75.6


User provided reference genes

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