Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0004130 Simmondsia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 2340.8 1182 100.0
EL10Ac6g15029 Beta vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1665.6 1188 70.0
AUR62018030 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1637.1 1187 69.0
Dinv40218 Davidia involucrata HOM05D005976 ORTHO05D007149 0.0e+00 1609.3 1191 68.4
Hund19685 Selenicereus undatus HOM05D005976 ORTHO05D007149 0.0e+00 1602.0 1305 63.8
AUR62003719 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1598.2 1187 67.9
TAR381G0142 Trochodendron aralioides HOM05D005976 ORTHO05D007149 0.0e+00 1547.3 1188 64.8
Haze_03641 Corylus avellana HOM05D005976 ORTHO05D007149 0.0e+00 1544.6 1196 64.5
Atru.chr3.58 Acer truncatum HOM05D005976 ORTHO05D007149 0.0e+00 1540.4 1197 64.3
QL10p048872 Quercus lobata HOM05D005976 ORTHO05D007149 0.0e+00 1535.8 1186 63.5
Hma1.2p1_0085F.1_g044370 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1535.4 1163 66.4
Actinidia28755 Actinidia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1530.0 1157 66.0
Cfa007111 Carpinus fangiana HOM05D005976 ORTHO05D007149 0.0e+00 1529.6 1195 63.9
RcHm_v2.0_Chr2g0096791 Rosa chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1514.2 1191 63.6
Ah.02g123200 Amaranthus hybridus HOM05D005976 ORTHO05D007149 0.0e+00 1511.1 1186 64.8
Potri.011G144700 Populus trichocarpa HOM05D005976 ORTHO05D007149 0.0e+00 1510.7 1184 63.3
Sabra11G0129800 Salix brachista HOM05D005976 ORTHO05D007149 0.0e+00 1506.5 1174 63.9
Eucgr.I02203 Eucalyptus grandis HOM05D005976 ORTHO05D007149 0.0e+00 1489.2 1187 61.8
Duzib147G1500 Durio zibethinus HOM05D005976 ORTHO05D007149 0.0e+00 1486.9 1169 63.0
FAN19G1634 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1486.5 1200 63.2
Aqoxy6G02993 Aquilegia oxysepala HOM05D005976 ORTHO05D007149 0.0e+00 1484.9 1191 62.6
FvH4_1g10000 Fragaria vesca HOM05D005976 ORTHO05D007149 0.0e+00 1484.9 1192 62.8
Gorai.001G200200 Gossypium raimondii HOM05D005976 ORTHO05D007149 0.0e+00 1481.5 1167 63.1
FAN28G0094 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1479.2 1190 63.1
MD15G1228100 Malus domestica HOM05D005976 ORTHO05D007149 0.0e+00 1477.6 1186 62.5
Gohir.D07G179000 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1476.5 1167 62.9
Gohir.A07G172300 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1476.1 1167 63.0
Sopen02g026940 Solanum pennellii HOM05D005976 ORTHO05D007149 0.0e+00 1473.4 1190 63.4
PGSC0003DMG402013639 Solanum tuberosum HOM05D005976 ORTHO05D007149 0.0e+00 1471.1 1190 63.4
FAN26G2461 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1467.6 1197 62.1
PGR119G1871 Punica granatum HOM05D005976 ORTHO05D007149 0.0e+00 1464.1 1178 62.1
COL.COLO4_25046 Corchorus olitorius HOM05D005976 ORTHO05D007149 0.0e+00 1463.4 1171 60.9
Glyma.16G112900 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1461.0 1184 60.4
Solyc02g082280.3 Solanum lycopersicum HOM05D005976 ORTHO05D007149 0.0e+00 1459.9 1190 63.0
TWI73G0718 Tripterygium wilfordii HOM05D005976 ORTHO05D007149 0.0e+00 1459.9 1180 61.2
FAN23G1414 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1459.5 1199 61.9
vmacro18477 Vaccinium macrocarpon HOM05D005976 ORTHO05D007149 0.0e+00 1456.0 1203 62.4
Rhsim08G0025900 Rhododendron simsii HOM05D005976 ORTHO05D007149 0.0e+00 1453.0 1184 63.0
DCAR_014120 Daucus carota HOM05D005976 ORTHO05D007149 0.0e+00 1450.6 1177 62.4
Cc07_g12200 Coffea canephora HOM05D005976 ORTHO05D007149 0.0e+00 1449.9 1171 62.7
Ca_22438_v3 Cicer arietinum L. HOM05D005976 ORTHO05D007149 0.0e+00 1449.1 1191 59.9
PSO675G7053 Papaver somniferum HOM05D005976 ORTHO05D007149 0.0e+00 1448.0 1199 61.1
Thecc.01G002100 Theobroma cacao HOM05D005976 ORTHO05D007149 0.0e+00 1447.2 1184 61.3
Psat4g106360 Pisum sativum HOM05D005976 ORTHO05D007149 0.0e+00 1444.5 1179 60.1
Nitab4.5_0000855g0090 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1441.4 1171 62.3
Glyma.09G196100 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1437.2 1188 60.0
Nitab4.5_0011596g0010 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1436.0 1171 62.1
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 0.0e+00 1436.0 1195 61.1
Medtr8g072710 Medicago truncatula HOM05D005976 ORTHO05D007149 0.0e+00 1435.2 1192 58.6
CAN.G1428.10 Capsicum annuum HOM05D005976 ORTHO05D007149 0.0e+00 1434.9 1190 61.7
Lalb_Chr16g0391711 Lupinus albus HOM05D005976 ORTHO05D007149 0.0e+00 1433.7 1185 59.0
VMungo0251G2412 Vigna mungo HOM05D005976 ORTHO05D007149 0.0e+00 1431.4 1188 60.0
Phvul.003G271600 Phaseolus vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1431.0 1188 59.3
TPR.G27924 Trifolium pratense HOM05D005976 ORTHO05D007149 0.0e+00 1428.7 1201 58.6
CiPaw.06G032800 Carya illinoinensis HOM05D005976 ORTHO05D007149 0.0e+00 1416.4 1105 63.7
Lj4g0003913 Lotus japonicus HOM05D005976 ORTHO05D007149 0.0e+00 1416.0 1188 58.8
GSVIVG01026446001 Vitis vinifera HOM05D005976 ORTHO05D007149 0.0e+00 1415.2 1030 67.4
Peaxi162Scf00677g00223 Petunia axillaris HOM05D005976 ORTHO05D007149 0.0e+00 1393.6 1190 60.8
Ciclev10026942m.g Citrus clementina HOM05D005976 ORTHO05D007149 0.0e+00 1392.5 1201 59.8
MSTRG.18885 Avicennia marina HOM05D005976 ORTHO05D007149 0.0e+00 1389.0 1187 59.8
MBI04_g31209_MAGBIO Magnolia biondii HOM05D005976 ORTHO05D007149 0.0e+00 1389.0 1188 60.6
THA.LOC104819155 Tarenaya hassleriana HOM05D005976 ORTHO05D007149 0.0e+00 1388.2 1192 57.8
Manes.02G116600 Manihot esculenta HOM05D005976 ORTHO05D007149 0.0e+00 1387.5 1073 63.9
MELO3C007982.2 Cucumis melo HOM05D005976 ORTHO05D007149 0.0e+00 1382.5 1183 58.8
CsaV3_6G047940 Cucumis sativus L. HOM05D005976 ORTHO05D007149 0.0e+00 1382.1 1183 58.9
CARHR281820 Cardamine hirsuta HOM05D005976 ORTHO05D007149 0.0e+00 1379.8 1188 57.6
Aa31LG1G14470 Aethionema arabicum HOM05D005976 ORTHO05D007149 0.0e+00 1366.7 1187 56.7
AT5G65950 Arabidopsis thaliana HOM05D005976 ORTHO05D007149 0.0e+00 1365.9 1196 56.4
arahy.Tifrunner.gnm1.ann1.2S25M9 Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1365.5 1183 57.3
HanXRQChr09g0259071 Helianthus annuus HOM05D005976 ORTHO05D007149 0.0e+00 1355.1 1180 59.7
arahy.Tifrunner.gnm1.ann1.8BHC3E Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1354.3 1183 57.1
Thhalv10003539m.g Eutrema salsugineum HOM05D005976 ORTHO05D007149 0.0e+00 1353.2 1190 56.7
A08p00020 Brassica napus HOM05D005976 ORTHO05D007149 0.0e+00 1351.3 1190 56.4
SalBow2G0432 Salvia bowleyana HOM05D005976 ORTHO05D007149 0.0e+00 1349.0 1217 56.5
AL8G45690 Arabidopsis lyrata HOM05D005976 ORTHO05D007149 0.0e+00 1345.1 1189 56.1
BolC3t21644H Brassica oleracea HOM05D005976 ORTHO05D007149 0.0e+00 1345.1 1187 56.4
Sp2g30740 Schrenkiella parvula HOM05D005976 ORTHO05D007149 0.0e+00 1342.0 1187 56.5
Carub.0008s2857 Capsella rubella HOM05D005976 ORTHO05D007149 0.0e+00 1339.7 1186 57.0
ECA232G3572 Erigeron canadensis HOM05D005976 ORTHO05D007149 0.0e+00 1326.2 1185 59.0
SGA_v2.0_scaffold6G03353 Striga asiatica HOM05D005976 ORTHO05D007149 0.0e+00 1322.8 1198 57.8
Nn6g31621 Nelumbo nucifera HOM05D005976 ORTHO05D007149 0.0e+00 1312.4 1064 61.8
ClCG01G020980 Citrullus lanatus HOM05D005976 ORTHO05D007149 0.0e+00 1306.2 1178 57.1
ATR0605G043 Amborella trichopoda HOM05D005976 ORTHO05D007149 0.0e+00 1303.9 1188 56.2
Hma1.2p1_0085F.1_g044380 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1293.9 1037 64.1
CDE06G1894 Ceratophyllum demersum HOM05D005976 ORTHO05D007149 0.0e+00 1285.8 1175 55.7
Lsat_1_v5_gn_8_114080 Lactuca sativa HOM05D005976 ORTHO05D007149 0.0e+00 1269.6 1174 56.6
Zm00001eb252650 Zea mays HOM05D005976 ORTHO05D007149 0.0e+00 1250.7 1190 53.1
Migut.D02574 Erythranthe guttata HOM05D005976 ORTHO05D007149 0.0e+00 1235.7 1181 55.5
Oeu021989.1 Olea europaea HOM05D005976 ORTHO05D007149 0.0e+00 1233.0 1197 55.5
unitig_746.g26634 Utricularia gibba HOM05D005976 ORTHO05D007149 0.0e+00 1229.5 1209 53.1
Sed0007865 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1180.6 1056 58.0
Sed0007938 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1164.4 1056 56.0
SEGI_34852 Sequoiadendron giganteum HOM05D005976 ORTHO05D007149 0.0e+00 1149.4 1218 49.4
BcaNung06215 Brassica carinata HOM05D005976 ORTHO05D007149 3.3e-303 1045.4 1035 52.0
Mapoly0077s0054 Marchantia polymorpha HOM05D005976 ORTHO05D007149 9.0e-261 904.4 1213 42.1
Cpa.g.sc365.8 Carica papaya HOM05D005976 ORTHO05D007149 3.8e-259 899.0 765 58.8
Pp3c17_22570 Physcomitrium patens HOM05D005976 ORTHO05D007149 1.3e-251 874.0 1188 41.5
Mapoly0075s0041 Marchantia polymorpha HOM05D005976 ORTHO05D007149 5.8e-244 848.6 1218 40.3
BraA08t32059Z Brassica rapa HOM05D005976 ORTHO05D007149 4.3e-239 832.4 743 56.1
Lj4A240G31 Lonicera japonica HOM05D005976 ORTHO05D007149 9.6e-239 831.2 691 63.1
Migut.D02599 Erythranthe guttata HOM05D005976 ORTHO05D007149 3.1e-229 799.7 724 57.7
Os02g0714500 Oryza sativa ssp. japonica HOM05D005976 ORTHO05D007149 1.5e-215 754.2 694 55.0
Potri.001G457201 Populus trichocarpa HOM05D005976 ORTHO05D007149 1.8e-213 747.3 843 49.8
HPP92_022739 Vanilla planifolia HOM05D005976 ORTHO05D007149 1.6e-204 717.6 714 52.2
FAN23G1168 Fragaria x ananassa HOM05D005976 ORTHO05D007149 6.1e-185 652.5 512 63.9
AagrBONN_evm.TU.Sc2ySwM_117.3206 Anthoceros agrestis HOM05D005976 ORTHO05D007149 1.1e-178 631.7 777 46.1
Hund03584 Selenicereus undatus HOM05D005976 ORTHO05D007149 1.5e-170 604.7 436 70.0
SHI19208 Sapria himalayana HOM05D005976 ORTHO05D007149 5.2e-168 596.3 785 42.4
Lj4C240T7 Lonicera japonica HOM05D005976 ORTHO05D007149 6.8e-168 595.9 455 64.0
CBR_g24120 Chara braunii HOM05D005976 ORTHO05D007149 2.9e-150 537.3 1346 29.0
Cpa.g.sc6.347 Carica papaya HOM05D005976 ORTHO05D007149 4.3e-122 443.7 439 54.7
Zm00001eb188960 Zea mays HOM05D002434 ORTHO05D007149 5.0e-118 430.3 450 49.6
Zm00001eb055070 Zea mays HOM05D005976 ORTHO05D007149 2.5e-106 391.3 432 47.9
SMO144G0134 Selaginella moellendorffii HOM05D005976 ORTHO05D007149 3.7e-105 387.5 680 35.3
Cc04_g09170 Coffea canephora HOM05D005976 ORTHO05D007149 5.0e-86 323.9 354 48.9
Zm00001eb339980 Zea mays HOM05D005976 ORTHO05D007149 9.8e-66 256.5 307 45.0
arahy.Tifrunner.gnm1.ann1.SH4Y7X Arachis hypogaea HOM05D005976 ORTHO05D007149 2.5e-53 215.3 357 38.9
MCO16G661 Micromonas commoda HOM05D005976 ORTHO05D007149 3.4e-50 204.9 1260 21.8
Zm00001eb425900 Zea mays HOM05D005976 ORTHO05D007149 2.7e-47 195.3 229 46.7
Manes.07G108212 Manihot esculenta HOM05D005976 ORTHO05D007149 2.3e-43 182.2 168 54.8
Hma1.2p1_0085F.1_g044360 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 2.0e-42 179.1 113 71.7
Hund03583 Selenicereus undatus HOM05D005976 ORTHO05D007149 1.0e-38 166.8 118 66.9
Cre17.g729700 Chlamydomonas reinhardtii HOM05D005976 ORTHO05D007149 1.7e-33 149.4 365 30.1
Oeu041882.1 Olea europaea HOM05D005976 ORTHO05D007149 3.5e-31 141.7 130 56.2
PRCOL_00004193 Prasinoderma coloniale HOM05D005976 ORTHO05D007149 3.8e-25 121.7 1182 21.1
Medtr4g115410 Medicago truncatula HOM05D005976 ORTHO05D007149 2.3e-06 59.3 40 65.0
Medtr3g103480 Medicago truncatula HOM05D005976 ORTHO05D007149 6.7e-06 57.8 40 60.0


User provided reference genes

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