Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0004120 Simmondsia chinensis HOM05D007735 ORTHO05D009638 1.2e-68 263.1 133 100.0
Cfa007115 Carpinus fangiana HOM05D007735 ORTHO05D009638 1.3e-22 110.2 140 45.7
QL06p053348 Quercus lobata HOM05D007735 ORTHO05D009638 8.3e-22 107.5 128 45.3
Manes.01G157700 Manihot esculenta HOM05D007735 ORTHO05D009638 2.0e-20 102.8 127 49.6
Nn5g31061 Nelumbo nucifera HOM05D007735 ORTHO05D009638 2.0e-20 102.8 126 47.6
TAR381G1223 Trochodendron aralioides HOM05D007735 ORTHO05D009638 5.9e-20 101.3 117 53.0
Cc07_g12240 Coffea canephora HOM05D007735 ORTHO05D009638 2.3e-19 99.4 133 44.4
CSS0016261 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 3.8e-19 98.6 116 47.4
Sabra16G0309000 Salix brachista HOM05D007735 ORTHO05D009638 1.5e-18 96.7 113 49.6
VMungo0251G0553 Vigna mungo HOM05D007735 ORTHO05D009638 2.5e-18 95.9 121 45.5
Manes.02G117000 Manihot esculenta HOM05D007735 ORTHO05D009638 4.2e-18 95.1 108 46.3
Phvul.003G272000 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 5.5e-18 94.7 121 45.5
Nn6g31607 Nelumbo nucifera HOM05D007735 ORTHO05D009638 9.5e-18 94.0 126 47.6
Nitab4.5_0006309g0010 Nicotiana tabacum HOM05D007735 ORTHO05D009638 1.2e-17 93.6 130 44.6
Thecc.01G001800 Theobroma cacao HOM05D007735 ORTHO05D009638 1.2e-17 93.6 130 46.9
Glyma.01G156500 Glycine max HOM05D007735 ORTHO05D009638 2.1e-17 92.8 123 46.3
Oeu045753.2 Olea europaea HOM05D007735 ORTHO05D009638 3.6e-17 92.0 121 45.5
Prupe.7G187700 Prunus persica HOM05D007735 ORTHO05D009638 6.1e-17 91.3 134 46.3
Glyma.09G195900 Glycine max HOM05D007735 ORTHO05D009638 1.4e-16 90.1 124 41.9
PGSC0003DMG400013637 Solanum tuberosum HOM05D007735 ORTHO05D009638 1.4e-16 90.1 129 45.7
VMungo1215G0699 Vigna mungo HOM05D007735 ORTHO05D009638 1.4e-16 90.1 124 46.8
Phvul.002G119100 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 1.8e-16 89.7 123 46.3
Solyc02g082240.1 Solanum lycopersicum HOM05D007735 ORTHO05D009638 1.8e-16 89.7 130 46.2
Eucgr.J02566 Eucalyptus grandis HOM05D007735 ORTHO05D009638 2.3e-16 89.4 124 45.2
Potri.011G145200 Populus trichocarpa HOM05D007735 ORTHO05D009638 2.3e-16 89.4 132 44.7
FvH4_1g09950 Fragaria vesca HOM05D007735 ORTHO05D009638 3.0e-16 89.0 126 48.4
FAN19G1654 Fragaria x ananassa HOM05D007735 ORTHO05D009638 3.0e-16 89.0 126 48.4
Lalb_Chr05g0214991 Lupinus albus HOM05D007735 ORTHO05D009638 3.0e-16 89.0 119 48.7
Lalb_Chr09g0324871 Lupinus albus HOM05D007735 ORTHO05D009638 4.0e-16 88.6 132 43.9
Ca_25020_v3 Cicer arietinum L. HOM05D007735 ORTHO05D009638 5.2e-16 88.2 125 44.0
Glyma.16G114400 Glycine max HOM05D007735 ORTHO05D009638 5.2e-16 88.2 126 40.5
FAN28G1635 Fragaria x ananassa HOM05D007735 ORTHO05D009638 8.9e-16 87.4 126 47.6
Peaxi162Scf00918g00052 Petunia axillaris HOM05D007735 ORTHO05D009638 1.2e-15 87.0 125 42.4
Aqoxy6G03024 Aquilegia oxysepala HOM05D007735 ORTHO05D009638 2.0e-15 86.3 121 46.3
Psat2g147360 Pisum sativum HOM05D007735 ORTHO05D009638 2.0e-15 86.3 106 45.3
Sopen02g026900 Solanum pennellii HOM05D007735 ORTHO05D009638 2.0e-15 86.3 129 45.7
Glyma.11G088300 Glycine max HOM05D007735 ORTHO05D009638 2.6e-15 85.9 117 44.4
Gohir.A05G393900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 3.4e-15 85.5 119 45.4
TPR.G33757 Trifolium pratense HOM05D001957 ORTHO05D002015 3.4e-15 85.5 106 45.3
FAN23G3070 Fragaria x ananassa HOM05D007735 ORTHO05D009638 4.4e-15 85.1 125 46.4
Gorai.012G025100 Gossypium raimondii HOM05D007735 ORTHO05D009638 5.7e-15 84.7 119 45.4
Gohir.D04G020900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 1.3e-14 83.6 119 44.5
RcHm_v2.0_Chr2g0096741 Rosa chinensis HOM05D007735 ORTHO05D009638 1.7e-14 83.2 121 47.1
Medtr5g024910 Medicago truncatula HOM05D007735 ORTHO05D009638 2.2e-14 82.8 115 43.5
Lalb_Chr16g0380221 Lupinus albus HOM05D007735 ORTHO05D009638 2.8e-14 82.4 110 41.8
CSS0025501 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 3.7e-14 82.0 97 51.5
Sabra11G0130300 Salix brachista HOM05D007735 ORTHO05D009638 3.7e-14 82.0 115 46.1
Oeu043409.2 Olea europaea HOM05D007735 ORTHO05D009638 6.3e-14 81.3 122 41.0
PGSC0003DMG400015147 Solanum tuberosum HOM05D007735 ORTHO05D009638 6.3e-14 81.3 103 44.7
Potri.001G456700 Populus trichocarpa HOM05D007735 ORTHO05D009638 8.3e-14 80.9 114 48.2
Eucgr.I02199 Eucalyptus grandis HOM05D007735 ORTHO05D009638 1.1e-13 80.5 143 35.7
Sed0019252 Sechium edule HOM05D007735 ORTHO05D009638 1.1e-13 80.5 98 42.9
Lsat_1_v5_gn_2_74220 Lactuca sativa HOM05D007735 ORTHO05D009638 4.1e-13 78.6 113 44.2
Medtr8g072610 Medicago truncatula HOM05D007735 ORTHO05D009638 7.0e-13 77.8 127 41.7
Psat4g107200 Pisum sativum HOM05D007735 ORTHO05D009638 7.0e-13 77.8 122 41.8
Lsat_1_v5_gn_8_114101 Lactuca sativa HOM05D007735 ORTHO05D009638 9.2e-13 77.4 105 42.9
DCAR_014121 Daucus carota HOM05D007735 ORTHO05D009638 1.2e-12 77.0 106 42.5
DCAR_014122 Daucus carota HOM05D007735 ORTHO05D009638 1.2e-12 77.0 106 42.5
FAN26G0974 Fragaria x ananassa HOM05D007735 ORTHO05D009638 1.2e-12 77.0 114 48.2
Nitab4.5_0000855g0160 Nicotiana tabacum HOM05D007735 ORTHO05D009638 1.2e-12 77.0 130 37.7
TPR.G19311 Trifolium pratense HOM05D007735 ORTHO05D009638 2.0e-12 76.3 122 44.3
Lsat_1_v5_gn_8_114121 Lactuca sativa HOM05D007735 ORTHO05D009638 2.7e-12 75.9 108 40.7
Lsat_1_v5_gn_3_69161 Lactuca sativa HOM05D007735 ORTHO05D009638 4.5e-12 75.1 118 43.2
FAN23G2983 Fragaria x ananassa HOM05D007735 ORTHO05D009638 5.9e-12 74.7 114 47.4
Lalb_Chr05g0229481 Lupinus albus HOM05D007735 ORTHO05D009638 7.8e-12 74.3 123 39.8
PGSC0003DMG400018690 Solanum tuberosum HOM05D007735 ORTHO05D009638 1.3e-11 73.6 129 35.7
ECA246G0225 Erigeron canadensis HOM05D007735 ORTHO05D009638 1.7e-11 73.2 115 41.7
COL.COLO4_22568 Corchorus olitorius HOM05D007735 ORTHO05D009638 2.3e-11 72.8 123 44.7
Lj2g0017807 Lotus japonicus HOM05D007735 ORTHO05D009638 8.6e-11 70.9 133 39.8
Nitab4.5_0004448g0030 Nicotiana tabacum HOM05D007735 ORTHO05D009638 8.6e-11 70.9 132 36.4
LjContig00247g0020335 Lotus japonicus HOM05D007735 ORTHO05D009638 1.5e-10 70.1 124 41.1
Cpa.g.sc6.350 Carica papaya HOM05D007735 ORTHO05D009638 2.5e-10 69.3 105 43.8
SGA_v2.0_scaffold2G00933 Striga asiatica HOM05D007735 ORTHO05D009638 1.6e-09 66.6 105 39.0
SGA_v2.0_scaffold108G30951 Striga asiatica HOM05D007735 ORTHO05D009638 2.8e-09 65.9 130 33.8
CiPaw.07G000500 Carya illinoinensis HOM05D007735 ORTHO05D009638 8.0e-09 64.3 118 38.1
Haze_22869 Corylus avellana HOM05D007735 ORTHO05D009638 1.0e-08 63.9 115 40.9
arahy.Tifrunner.gnm1.ann1.Q37N58 Arachis hypogaea HOM05D007735 ORTHO05D009638 1.8e-08 63.2 103 44.7
arahy.Tifrunner.gnm1.ann1.S9U9HD Arachis hypogaea HOM05D007735 ORTHO05D009638 1.8e-08 63.2 103 44.7
CsaV3_3G000130 Cucumis sativus L. HOM05D007735 ORTHO05D009638 1.2e-07 60.5 110 39.1
CsaV3_UNG155170 Cucumis sativus L. HOM05D007735 ORTHO05D009638 1.2e-07 60.5 110 39.1
ClCG10G000110 Citrullus lanatus HOM05D007735 ORTHO05D009638 7.5e-07 57.8 110 32.7
MELO3C013706.2 Cucumis melo HOM05D007735 ORTHO05D009638 9.8e-07 57.4 112 38.4
Nitab4.5_0004507g0030 Nicotiana tabacum HOM05D007735 ORTHO05D009638 9.8e-07 57.4 117 35.9
CiPaw.07G132500 Carya illinoinensis HOM05D007735 ORTHO05D009638 1.7e-06 56.6 115 34.8
Nitab4.5_0000235g0170 Nicotiana tabacum HOM05D007735 ORTHO05D009638 2.2e-06 56.2 89 40.4
Rhsim06G0002400 Rhododendron simsii HOM05D001957 ORTHO05D009638 2.2e-06 56.2 120 32.5


User provided reference genes

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