Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 2.4e-193 678.7 349 100.0
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 2.5e-150 535.8 354 73.4
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 3.2e-150 535.4 313 82.7
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 2.7e-149 532.3 354 73.2
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.5e-147 526.6 353 73.7
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 8.2e-146 520.8 350 74.9
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 3.1e-145 518.8 353 76.2
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 5.9e-144 514.6 354 71.8
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 2.2e-143 512.7 350 73.7
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 2.9e-143 512.3 353 72.2
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 2.5e-142 509.2 312 78.8
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 5.5e-142 508.1 353 73.1
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 1.2e-141 506.9 355 70.7
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 2.7e-141 505.8 312 77.2
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 6.1e-141 504.6 354 70.6
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 2.6e-139 499.2 352 70.7
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 3.3e-139 498.8 354 69.8
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 5.7e-139 498.0 353 68.8
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 9.7e-139 497.3 354 70.1
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 3.7e-138 495.4 353 68.3
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 4.8e-138 495.0 352 69.0
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 6.3e-138 494.6 362 68.0
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 8.2e-138 494.2 350 68.6
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 8.2e-138 494.2 361 67.6
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 1.8e-137 493.0 352 68.2
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 2.4e-137 492.7 352 68.5
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 2.4e-137 492.7 360 70.0
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 4.1e-137 491.9 315 73.7
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 4.1e-137 491.9 363 69.4
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 5.3e-137 491.5 351 67.2
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 9.1e-137 490.7 290 81.4
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 1.6e-136 490.0 354 68.1
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 2.7e-136 489.2 354 70.6
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 2.7e-136 489.2 313 75.7
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 3.5e-136 488.8 350 68.0
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 4.5e-136 488.4 350 68.0
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 4.5e-136 488.4 354 67.2
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 7.7e-136 487.6 350 68.0
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 7.7e-136 487.6 352 70.5
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 7.7e-136 487.6 350 67.7
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 1.0e-135 487.3 350 67.4
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 1.3e-135 486.9 354 67.5
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 1.7e-135 486.5 352 68.5
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 6.5e-135 484.6 354 67.2
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 1.1e-134 483.8 349 67.9
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 2.5e-134 482.6 352 65.6
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 3.2e-134 482.3 301 75.7
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 5.5e-134 481.5 352 67.3
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 1.6e-133 479.9 320 71.6
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 2.7e-133 479.2 312 74.7
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 3.6e-133 478.8 356 70.2
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 1.0e-132 477.2 406 63.1
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 2.3e-132 476.1 355 67.3
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 1.2e-131 473.8 302 75.2
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 5.7e-131 471.5 354 66.1
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 1.3e-130 470.3 354 67.2
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.7e-130 469.9 354 65.0
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 1.8e-129 466.5 354 68.1
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 2.4e-129 466.1 308 72.1
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 7.0e-129 464.5 356 68.3
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 9.1e-129 464.2 350 63.7
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.6e-128 463.4 290 77.6
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 3.5e-128 462.2 354 67.5
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 5.9e-128 461.5 313 70.0
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 1.0e-127 460.7 354 64.4
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 1.7e-127 459.9 356 66.6
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 2.2e-127 459.5 374 66.0
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 3.8e-127 458.8 349 64.5
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 6.5e-127 458.0 298 71.5
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 1.1e-126 457.2 351 63.8
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.5e-126 456.8 329 69.0
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 1.9e-126 456.4 313 69.6
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 6.1e-125 451.4 353 66.0
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 1.4e-124 450.3 359 63.2
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 3.4e-123 445.7 365 63.6
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 5.7e-123 444.9 356 64.6
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 7.5e-123 444.5 364 63.5
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 1.3e-122 443.7 352 65.3
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 2.2e-122 443.0 356 62.1
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 3.7e-122 442.2 299 69.9
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 3.7e-122 442.2 357 62.5
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 1.1e-121 440.7 354 62.1
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 9.2e-121 437.6 272 77.9
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 7.8e-120 434.5 381 60.6
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 5.0e-119 431.8 352 62.8
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 1.1e-118 430.6 313 66.1
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 5.6e-118 428.3 353 62.9
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 9.5e-118 427.6 314 66.9
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 1.6e-117 426.8 314 66.6
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 2.1e-117 426.4 360 59.7
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 4.7e-117 425.2 314 66.9
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 6.1e-117 424.9 299 68.2
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 8.0e-117 424.5 299 68.2
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 1.0e-116 424.1 299 68.6
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 1.0e-116 424.1 299 68.6
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 1.8e-116 423.3 306 66.7
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 3.0e-116 422.5 299 67.9
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 5.2e-116 421.8 302 67.5
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 6.8e-116 421.4 295 73.6
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 8.9e-116 421.0 299 67.6
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 2.6e-115 419.5 299 67.9
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 3.4e-115 419.1 299 66.9
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 5.7e-115 418.3 356 62.9
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 9.8e-115 417.5 299 67.6
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 9.8e-115 417.5 356 58.1
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 2.9e-114 416.0 299 67.2
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 4.9e-114 415.2 315 66.3
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 5.9e-112 408.3 349 57.9
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 7.0e-105 384.8 231 79.2
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 9.2e-105 384.4 299 63.2
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 1.2e-104 384.0 319 63.3
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 1.6e-104 383.6 315 64.1
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 5.6e-102 375.2 313 62.0
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 4.7e-101 372.1 365 58.4
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 6.2e-101 371.7 308 62.3
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 1.4e-100 370.5 313 59.1
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 1.7e-98 363.6 302 60.3
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 1.4e-97 360.5 298 58.1
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 6.6e-95 351.7 297 57.6
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 5.2e-92 342.0 290 61.7
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 7.6e-91 338.2 309 55.0
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 1.7e-90 337.0 267 65.5
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 1.4e-89 334.0 352 50.3
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.9e-89 333.6 304 55.6
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 2.0e-83 313.5 202 72.3
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 1.3e-79 300.8 306 48.4
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 7.9e-64 248.4 300 41.3
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 3.1e-60 236.5 144 79.2
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 9.0e-60 235.0 156 71.2
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 2.7e-56 223.4 251 47.8
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 1.1e-49 201.4 140 69.3
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 1.0e-47 194.9 155 59.4
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 1.5e-46 191.0 294 39.1
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 1.1e-44 184.9 245 41.2
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 4.5e-43 179.5 296 35.8
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 1.3e-42 177.9 148 61.5
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 2.5e-41 173.7 285 42.5
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 1.6e-40 171.0 140 62.9
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 7.4e-38 162.2 119 62.2
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 4.2e-33 146.4 154 51.3
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 2.9e-26 123.6 99 62.6
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 5.5e-25 119.4 240 37.1
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 2.1e-24 117.5 79 74.7
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 1.5e-22 111.3 94 54.3
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 5.7e-14 82.8 73 53.4
Cc11_g01140 Coffea canephora HOM05D004767 ORTHO05D005674 2.2e-13 80.9 44 77.3
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 2.2e-13 80.9 162 32.7
Actinidia09820 Actinidia chinensis HOM05D004767 ORTHO05D005674 1.1e-12 78.6 56 66.1
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 1.4e-12 78.2 50 72.0
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 4.1e-12 76.6 58 58.6
Cc11_g01130 Coffea canephora HOM05D004767 ORTHO05D005674 2.7e-11 73.9 45 73.3
GSVIVG01020113001 Vitis vinifera HOM05D004767 ORTHO05D005674 7.7e-11 72.4 53 67.9
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 2.9e-10 70.5 238 26.9
Actinidia27124 Actinidia chinensis HOM05D005323 ORTHO05D006820 2.1e-08 64.3 225 25.8
Dinv18320 Davidia involucrata HOM05D005323 ORTHO05D006820 1.8e-07 61.2 226 25.2
arahy.Tifrunner.gnm1.ann1.157ZG7 Arachis hypogaea HOM05D005323 ORTHO05D006820 2.3e-07 60.8 225 24.0
arahy.Tifrunner.gnm1.ann1.353MUE Arachis hypogaea HOM05D005323 ORTHO05D006820 2.3e-07 60.8 225 24.0
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 3.0e-07 60.5 166 23.5
Lj1g0017737 Lotus japonicus HOM05D005323 ORTHO05D006820 4.0e-07 60.1 224 24.1
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 4.0e-07 60.1 225 24.0
Rhsim09G0008200 Rhododendron simsii HOM05D005323 ORTHO05D006820 6.8e-07 59.3 221 25.8
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 8.9e-07 58.9 156 25.0
Peaxi162Scf00883g00035 Petunia axillaris HOM05D005323 ORTHO05D006820 1.5e-06 58.2 223 22.9
Lalb_Chr14g0364721 Lupinus albus HOM05D005323 ORTHO05D006820 2.0e-06 57.8 224 23.7
Manes.01G016900 Manihot esculenta HOM05D005323 ORTHO05D006820 4.4e-06 56.6 225 24.4
FAN09G4623 Fragaria x ananassa HOM05D004669 ORTHO05D005767 5.7e-06 56.2 299 21.4
FAN14G3011 Fragaria x ananassa HOM05D004669 ORTHO05D005767 5.7e-06 56.2 299 21.4
Glyma.16G037700 Glycine max HOM05D005323 ORTHO05D006820 5.7e-06 56.2 224 23.2
A06p11500 Brassica napus HOM05D000746 ORTHO05D005767 7.5e-06 55.8 282 20.6
C05p13620 Brassica napus HOM05D004669 ORTHO05D005767 7.5e-06 55.8 282 20.6
BolC5t30098H Brassica oleracea HOM05D004669 ORTHO05D005767 7.5e-06 55.8 282 20.6
BraA06t24327Z Brassica rapa HOM05D000746 ORTHO05D005767 7.5e-06 55.8 282 20.6
Nitab4.5_0002913g0040 Nicotiana tabacum HOM05D005323 ORTHO05D006820 7.5e-06 55.8 217 24.0
FAN05G0230 Fragaria x ananassa HOM05D004669 ORTHO05D005767 9.8e-06 55.5 299 21.1
Phvul.001G114300 Phaseolus vulgaris HOM05D005323 ORTHO05D006820 9.8e-06 55.5 223 23.3


User provided reference genes

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