Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 8.8e-40 166.4 78 100.0
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.2e-28 129.4 78 74.4
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 3.5e-28 127.9 78 73.1
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 7.7e-28 126.7 78 71.8
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 2.2e-27 125.2 78 71.8
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 6.5e-27 123.6 78 69.2
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 8.5e-27 123.2 78 70.5
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 8.5e-27 123.2 79 72.2
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 1.1e-26 122.9 79 72.2
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 1.9e-26 122.1 78 69.2
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 2.5e-26 121.7 78 66.7
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 7.2e-26 120.2 78 69.2
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 9.4e-26 119.8 78 67.9
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 1.6e-25 119.0 79 68.4
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 2.1e-25 118.6 78 67.9
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 2.1e-25 118.6 79 68.4
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 2.1e-25 118.6 77 68.8
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 3.6e-25 117.9 79 67.1
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 3.6e-25 117.9 78 65.4
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 3.6e-25 117.9 78 65.4
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 3.6e-25 117.9 78 65.4
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 4.7e-25 117.5 78 65.4
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 4.7e-25 117.5 79 68.4
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 4.7e-25 117.5 79 68.4
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 4.7e-25 117.5 79 68.4
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 6.1e-25 117.1 79 67.1
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 6.1e-25 117.1 81 67.9
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 8.0e-25 116.7 78 65.4
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 1.0e-24 116.3 85 63.5
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 1.0e-24 116.3 78 69.2
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 1.4e-24 115.9 75 66.7
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 1.8e-24 115.5 78 64.1
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 1.8e-24 115.5 80 67.5
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 1.8e-24 115.5 77 67.5
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 2.3e-24 115.2 78 65.4
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 3.0e-24 114.8 78 64.1
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 4.0e-24 114.4 78 67.9
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 8.8e-24 113.2 80 66.2
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 1.5e-23 112.5 78 65.4
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 1.5e-23 112.5 86 61.6
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 2.0e-23 112.1 78 62.8
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 2.6e-23 111.7 79 67.1
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 2.6e-23 111.7 74 63.5
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 2.6e-23 111.7 79 63.3
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 2.6e-23 111.7 81 61.7
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 2.6e-23 111.7 80 62.5
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 4.4e-23 110.9 81 61.7
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 4.4e-23 110.9 78 62.8
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 4.4e-23 110.9 79 68.4
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 5.7e-23 110.5 81 61.7
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 5.7e-23 110.5 81 61.7
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 7.5e-23 110.2 86 58.1
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 1.3e-22 109.4 83 63.9
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 2.2e-22 108.6 83 59.0
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 3.7e-22 107.8 81 58.0
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 3.7e-22 107.8 72 65.3
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 4.9e-22 107.5 78 61.5
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 8.3e-22 106.7 72 63.9
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 1.4e-21 105.9 86 59.3
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 5.4e-21 104.0 79 55.7
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 7.0e-21 103.6 86 54.7
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 2.7e-20 101.7 78 57.7
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 2.7e-20 101.7 81 54.3
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 3.5e-20 101.3 78 56.4
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 3.5e-20 101.3 86 57.0
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 3.5e-20 101.3 86 57.0
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 3.5e-20 101.3 86 57.0
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 3.5e-20 101.3 86 57.0
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 7.7e-20 100.1 79 58.2
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 7.7e-20 100.1 79 58.2
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 1.0e-19 99.8 79 59.5
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 1.3e-19 99.4 85 56.5
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 1.3e-19 99.4 85 56.5
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 1.3e-19 99.4 85 56.5
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 1.3e-19 99.4 85 56.5
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 2.9e-19 98.2 81 58.0
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 2.9e-19 98.2 81 58.0
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 2.9e-19 98.2 81 58.0
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 3.8e-19 97.8 81 58.0
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 5.0e-19 97.4 81 58.0
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 2.5e-18 95.1 81 58.0
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 2.5e-18 95.1 80 55.0
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 7.2e-18 93.6 81 56.8
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 9.5e-18 93.2 81 56.8
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 1.2e-17 92.8 81 56.8
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 4.7e-17 90.9 81 56.8
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 4.7e-17 90.9 71 60.6
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 8.0e-17 90.1 81 55.6
SEGI_31848 Sequoiadendron giganteum HOM05D003975 ORTHO05D009899 3.7e-06 54.7 40 60.0


User provided reference genes

Program Settings