Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0003350 Simmondsia chinensis HOM05D007510 ORTHO05D009587 3.8e-63 244.6 118 100.0
Sc16g0002400 Simmondsia chinensis HOM05D007510 ORTHO05D009587 8.4e-18 94.0 108 50.9
A10p22120 Brassica napus HOM05D007510 ORTHO05D009587 2.4e-12 75.9 107 43.0
BraA10t44271Z Brassica rapa HOM05D007510 ORTHO05D009587 2.4e-12 75.9 107 43.0
Medtr8g076660 Medicago truncatula HOM05D007510 ORTHO05D009587 4.0e-12 75.1 59 55.9
VMungo0251G3154 Vigna mungo HOM05D007510 ORTHO05D009587 1.2e-11 73.6 43 67.4
AUR62007639 Chenopodium quinoa HOM05D007510 ORTHO05D009587 1.5e-11 73.2 40 72.5
TPR.G21530 Trifolium pratense HOM05D007510 ORTHO05D009587 1.5e-11 73.2 56 53.6
vmacro22104 Vaccinium macrocarpon HOM05D007510 ORTHO05D009587 1.5e-11 73.2 41 73.2
Rhsim08G0036700 Rhododendron simsii HOM05D007510 ORTHO05D009587 2.6e-11 72.4 47 66.0
ECA232G0818 Erigeron canadensis HOM05D001094 ORTHO05D001050 4.5e-11 71.6 53 62.3
COL.COLO4_21980 Corchorus olitorius HOM05D001094 ORTHO05D001050 7.6e-11 70.9 87 44.8
Ah.02g124790 Amaranthus hybridus HOM05D007510 ORTHO05D009587 9.9e-11 70.5 58 55.2
Glyma.02G052200 Glycine max HOM05D007510 ORTHO05D009587 9.9e-11 70.5 43 65.1
Lalb_Chr05g0229951 Lupinus albus HOM05D007510 ORTHO05D009587 9.9e-11 70.5 49 61.2
Aa31LG1G14840 Aethionema arabicum HOM05D007510 ORTHO05D009587 1.3e-10 70.1 43 65.1
Actinidia26112 Actinidia chinensis HOM05D007510 ORTHO05D009587 1.7e-10 69.7 91 47.3
Aa31LG11G5850 Aethionema arabicum HOM05D007510 ORTHO05D009587 1.7e-10 69.7 42 66.7
CSS0038414 Camellia sinensis var. sinensis HOM05D007510 ORTHO05D009587 1.7e-10 69.7 58 58.6
SalBow5G2055 Salvia bowleyana HOM05D007510 ORTHO05D009587 3.8e-10 68.6 90 40.0
Carub.0006s1547 Capsella rubella HOM05D007510 ORTHO05D009587 4.9e-10 68.2 34 76.5
Ciclev10026716m.g Citrus clementina HOM05D007510 ORTHO05D009587 4.9e-10 68.2 59 57.6
BcaNung00409 Brassica carinata HOM05D007510 ORTHO05D009587 6.4e-10 67.8 34 76.5
Nn6g32199 Nelumbo nucifera HOM05D007510 ORTHO05D009587 6.4e-10 67.8 47 63.8
Oeu037724.1 Olea europaea HOM05D007510 ORTHO05D009587 6.4e-10 67.8 52 61.5
Oeu037725.1 Olea europaea HOM05D007510 ORTHO05D009587 6.4e-10 67.8 52 61.5
SHI08591 Sapria himalayana HOM05D007510 ORTHO05D009587 6.4e-10 67.8 59 52.5
Cpa.g.sc6.200 Carica papaya HOM05D007510 ORTHO05D009587 8.4e-10 67.4 39 74.4
Sp6g26950 Schrenkiella parvula HOM05D007510 ORTHO05D009587 8.4e-10 67.4 36 75.0
AL6G28360 Arabidopsis lyrata HOM05D007510 ORTHO05D009587 1.1e-09 67.0 31 83.9
AT5G17280 Arabidopsis thaliana HOM05D007510 ORTHO05D009587 1.1e-09 67.0 73 46.6
Ca_22347_v3 Cicer arietinum L. HOM05D007510 ORTHO05D009587 1.1e-09 67.0 36 75.0
Lsat_1_v5_gn_4_151140 Lactuca sativa HOM05D007510 ORTHO05D009587 1.1e-09 67.0 40 72.5
Psat4g096640 Pisum sativum HOM05D007510 ORTHO05D009587 1.1e-09 67.0 70 44.3
BcaC04g18811 Brassica carinata HOM05D007510 ORTHO05D009587 1.4e-09 66.6 35 77.1
C09p59910 Brassica napus HOM05D007510 ORTHO05D009587 1.4e-09 66.6 35 77.1
BolC9t58827H Brassica oleracea HOM05D007510 ORTHO05D009587 1.4e-09 66.6 35 77.1
Phvul.003G257700 Phaseolus vulgaris HOM05D007510 ORTHO05D009587 1.4e-09 66.6 41 63.4
EL10As8g23866 Beta vulgaris HOM05D007510 ORTHO05D009587 1.9e-09 66.2 40 62.5
ClCG01G020060 Citrullus lanatus HOM05D007510 ORTHO05D000703 1.9e-09 66.2 36 75.0
MELO3C007880.2 Cucumis melo HOM05D007510 ORTHO05D009587 1.9e-09 66.2 36 75.0
CsaV3_6G046830 Cucumis sativus L. HOM05D007510 ORTHO05D009587 1.9e-09 66.2 36 75.0
Thhalv10014934m.g Eutrema salsugineum HOM05D007510 ORTHO05D009587 2.4e-09 65.9 33 75.8
HanXRQChr11g0325681 Helianthus annuus HOM05D007510 ORTHO05D009587 2.4e-09 65.9 35 74.3
unitig_27.g25318 Utricularia gibba HOM05D007510 ORTHO05D009587 2.4e-09 65.9 46 63.0
arahy.Tifrunner.gnm1.ann1.X6BQPF Arachis hypogaea HOM05D007510 ORTHO05D009587 3.2e-09 65.5 53 50.9
FAN28G2971 Fragaria x ananassa HOM05D007510 ORTHO05D009587 3.2e-09 65.5 33 78.8
Gohir.A02G168700 Gossypium hirsutum HOM05D007510 ORTHO05D009587 3.2e-09 65.5 33 78.8
Gohir.D03G011300 Gossypium hirsutum HOM05D007510 ORTHO05D009587 3.2e-09 65.5 33 78.8
Gorai.003G011700 Gossypium raimondii HOM05D007510 ORTHO05D009587 3.2e-09 65.5 33 78.8
MD02G1136700 Malus domestica HOM05D007510 ORTHO05D000703 3.2e-09 65.5 33 78.8
BcaB08g36792 Brassica carinata HOM05D007510 ORTHO05D009587 4.2e-09 65.1 34 76.5
CiPaw.08G136300 Carya illinoinensis HOM05D007510 ORTHO05D009587 4.2e-09 65.1 42 69.0
Lj4g0024164 Lotus japonicus HOM05D007510 ORTHO05D009587 4.2e-09 65.1 46 60.9
CiPaw.04G025800 Carya illinoinensis HOM05D007510 ORTHO05D009587 5.5e-09 64.7 35 74.3
Manes.02G175500 Manihot esculenta HOM05D007510 ORTHO05D009587 5.5e-09 64.7 42 66.7
Prupe.7G163800 Prunus persica HOM05D007510 ORTHO05D000703 5.5e-09 64.7 70 50.0
Thecc.01G024800 Theobroma cacao HOM05D007510 ORTHO05D009587 5.5e-09 64.7 38 73.7
PGR102G2493 Punica granatum HOM05D007510 ORTHO05D009587 7.1e-09 64.3 41 63.4
A02p04090 Brassica napus HOM05D007510 ORTHO05D009587 9.3e-09 63.9 33 75.8
BraA02t05372Z Brassica rapa HOM05D007510 ORTHO05D009587 9.3e-09 63.9 33 75.8
Solyc02g084650.3 Solanum lycopersicum HOM05D007510 ORTHO05D009587 9.3e-09 63.9 35 74.3
Sopen02g029320 Solanum pennellii HOM05D007510 ORTHO05D009587 9.3e-09 63.9 35 74.3
PGSC0003DMG400003618 Solanum tuberosum HOM05D007510 ORTHO05D009587 9.3e-09 63.9 35 74.3
CANSAT78G1864 Cannabis sativa HOM05D007510 ORTHO05D009587 1.2e-08 63.5 34 73.5
Duzib264G0517 Durio zibethinus HOM05D007510 ORTHO05D009587 1.2e-08 63.5 31 80.6
Os09g0530900 Oryza sativa ssp. japonica HOM05D007510 ORTHO05D009587 1.2e-08 63.5 51 56.9
Potri.007G017200 Populus trichocarpa HOM05D007510 ORTHO05D009587 1.2e-08 63.5 110 34.5
Migut.H02491 Erythranthe guttata HOM05D007510 ORTHO05D009587 1.6e-08 63.2 69 42.0
Nn5g29177 Nelumbo nucifera HOM05D007510 ORTHO05D009587 1.6e-08 63.2 37 64.9
TWI09G1276 Tripterygium wilfordii HOM05D007510 ORTHO05D009587 1.6e-08 63.2 113 36.3
HPP92_028382 Vanilla planifolia HOM05D007510 ORTHO05D009587 1.6e-08 63.2 97 33.0
HanXRQChr15g0494821 Helianthus annuus HOM05D007510 ORTHO05D009587 2.1e-08 62.8 35 71.4
QL06p034549 Quercus lobata HOM05D007510 ORTHO05D009587 2.1e-08 62.8 81 43.2
SGA_v2.0_scaffold280G46849 Striga asiatica HOM05D007510 ORTHO05D009587 2.1e-08 62.8 33 78.8
FvH4_1g12420 Fragaria vesca HOM05D000116 ORTHO05D000703 2.7e-08 62.4 30 80.0
FAN26G1275 Fragaria x ananassa HOM05D007510 ORTHO05D009587 2.7e-08 62.4 36 69.4
Nitab4.5_0002266g0030 Nicotiana tabacum HOM05D007510 ORTHO05D009587 2.7e-08 62.4 55 49.1
Nitab4.5_0012525g0020 Nicotiana tabacum HOM05D007510 ORTHO05D009587 2.7e-08 62.4 35 71.4
Hma1.2p1_0266F.1_g107010 Hydrangea macrophylla HOM05D007510 ORTHO05D009587 3.5e-08 62.0 44 61.4
TAR625G1319 Trochodendron aralioides HOM05D007510 ORTHO05D009587 3.5e-08 62.0 34 73.5
Atru.chr3.749 Acer truncatum HOM05D007510 ORTHO05D009587 4.6e-08 61.6 43 58.1
CANSAT01G2887 Cannabis sativa HOM05D007510 ORTHO05D009587 6.0e-08 61.2 33 72.7
CAN.G358.14 Capsicum annuum HOM05D007510 ORTHO05D009587 6.0e-08 61.2 34 73.5
CARHR195940 Cardamine hirsuta HOM05D007510 ORTHO05D009587 6.0e-08 61.2 30 76.7
Cfa006928 Carpinus fangiana HOM05D007510 ORTHO05D009587 6.0e-08 61.2 38 73.7
HPP92_022284 Vanilla planifolia HOM05D007510 ORTHO05D009587 6.0e-08 61.2 37 59.5
HPP92_022401 Vanilla planifolia HOM05D007510 ORTHO05D009587 6.0e-08 61.2 37 59.5
Haze_03821 Corylus avellana HOM05D007510 ORTHO05D009587 1.8e-07 59.7 31 77.4
Sed0019199 Sechium edule HOM05D007510 ORTHO05D009587 1.8e-07 59.7 31 74.2
SEGI_27269 Sequoiadendron giganteum HOM05D007510 ORTHO05D009587 2.3e-07 59.3 33 69.7
Aqoxy1G00866 Aquilegia oxysepala HOM05D007510 ORTHO05D009587 3.0e-07 58.9 30 76.7
BcaC03g18546 Brassica carinata HOM05D007510 ORTHO05D009587 3.0e-07 58.9 31 74.2
C02p08940 Brassica napus HOM05D007510 ORTHO05D009587 3.0e-07 58.9 31 74.2
BolC2t06803H Brassica oleracea HOM05D007510 ORTHO05D009587 3.0e-07 58.9 31 74.2
AagrBONN_evm.TU.Sc2ySwM_368.2258 Anthoceros agrestis HOM05D007510 ORTHO05D009587 5.1e-07 58.2 41 65.9
CDE04G3692 Ceratophyllum demersum HOM05D001179 ORTHO05D002194 5.1e-07 58.2 30 76.7
AagrBONN_evm.TU.Sc2ySwM_228.2268 Anthoceros agrestis HOM05D007510 ORTHO05D009587 6.7e-07 57.8 69 43.5
CDE12G0095 Ceratophyllum demersum HOM05D007510 ORTHO05D009587 6.7e-07 57.8 40 67.5
ATR0661G079 Amborella trichopoda HOM05D007510 ORTHO05D009587 1.5e-06 56.6 30 66.7
Zm00001eb319510 Zea mays HOM05D007510 ORTHO05D009587 1.5e-06 56.6 25 80.0
Mapoly0025s0056 Marchantia polymorpha HOM05D007510 ORTHO05D009587 3.3e-06 55.5 38 57.9
Pp3c10_3490 Physcomitrium patens HOM05D007510 ORTHO05D009587 7.4e-06 54.3 32 65.6


User provided reference genes

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