Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.1e-74 283.1 137 100.0
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.5e-34 149.8 137 57.7
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 5.7e-26 121.3 138 49.3
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.1e-21 107.1 105 55.2
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.7e-17 93.2 139 43.2
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.7e-17 93.2 139 43.2
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 4.1e-16 88.6 137 39.4
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 9.1e-16 87.4 139 41.7
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.6e-15 86.7 137 40.1
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.6e-15 86.7 139 37.4
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 1.6e-15 86.7 137 41.6
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 4.5e-15 85.1 141 40.4
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 4.5e-15 85.1 137 40.1
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 5.9e-15 84.7 137 40.9
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.0e-14 84.0 137 39.4
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.3e-14 83.6 144 41.0
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.7e-14 83.2 144 41.0
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 2.9e-14 82.4 144 41.0
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.8e-14 82.0 141 41.1
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 3.8e-14 82.0 139 41.7
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 3.8e-14 82.0 137 40.1
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 3.8e-14 82.0 124 39.5
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 3.8e-14 82.0 144 36.8
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 5.0e-14 81.6 142 39.4
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 8.5e-14 80.9 138 37.7
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.1e-13 80.5 137 38.7
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.5e-13 80.1 144 38.9
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 1.5e-13 80.1 139 38.8
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.2e-13 79.0 145 38.6
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 3.2e-13 79.0 148 36.5
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 3.2e-13 79.0 141 36.2
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 3.2e-13 79.0 100 44.0
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 3.2e-13 79.0 137 38.7
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 4.2e-13 78.6 142 35.9
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 5.5e-13 78.2 137 37.2
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 7.2e-13 77.8 112 41.1
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 9.4e-13 77.4 144 38.2
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.7e-12 75.9 143 37.8
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 2.7e-12 75.9 143 35.0
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 2.7e-12 75.9 144 38.9
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 2.7e-12 75.9 143 35.0
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 2.7e-12 75.9 143 35.0
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 2.7e-12 75.9 134 37.3
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 3.6e-12 75.5 140 40.0
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 3.6e-12 75.5 140 40.0
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 3.6e-12 75.5 144 37.5
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 3.6e-12 75.5 138 34.1
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 4.7e-12 75.1 144 36.8
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.7e-12 75.1 145 35.2
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 6.1e-12 74.7 145 37.9
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 6.1e-12 74.7 99 43.4
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 8.0e-12 74.3 139 38.8
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 8.0e-12 74.3 144 38.9
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 8.0e-12 74.3 145 37.9
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 1.0e-11 73.9 144 38.9
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 1.0e-11 73.9 144 38.9
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 1.0e-11 73.9 144 38.9
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 1.0e-11 73.9 137 37.2
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 1.4e-11 73.6 144 38.2
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.4e-11 73.6 144 38.2
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.4e-11 73.6 112 39.3
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.8e-11 73.2 112 38.4
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 1.8e-11 73.2 144 36.8
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 1.8e-11 73.2 144 36.8
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 1.8e-11 73.2 144 36.8
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 1.8e-11 73.2 115 39.1
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.8e-11 73.2 143 37.1
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.8e-11 73.2 144 37.5
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.3e-11 72.8 144 36.8
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 3.0e-11 72.4 90 40.0
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.0e-11 72.4 144 38.2
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 3.0e-11 72.4 142 35.2
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 4.0e-11 72.0 144 37.5
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 4.0e-11 72.0 138 36.2
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 5.2e-11 71.6 144 36.1
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 5.2e-11 71.6 144 36.1
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 5.2e-11 71.6 140 33.6
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 6.8e-11 71.2 83 44.6
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 6.8e-11 71.2 144 37.5
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 6.8e-11 71.2 140 37.1
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 8.8e-11 70.9 100 38.0
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 8.8e-11 70.9 134 36.6
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-10 70.5 144 36.1
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 1.2e-10 70.5 144 36.1
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.5e-10 70.1 139 36.7
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 2.0e-10 69.7 144 36.1
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 2.0e-10 69.7 111 36.9
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 2.0e-10 69.7 111 36.9
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 2.0e-10 69.7 134 35.1
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 2.0e-10 69.7 107 35.5
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 2.6e-10 69.3 137 34.3
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 2.6e-10 69.3 137 34.3
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 2.6e-10 69.3 61 54.1
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 2.6e-10 69.3 104 40.4
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 2.6e-10 69.3 145 33.1
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 3.4e-10 68.9 137 35.8
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 4.4e-10 68.6 108 37.0
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 5.7e-10 68.2 134 34.3
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 5.7e-10 68.2 137 36.5
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 5.7e-10 68.2 102 31.4
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 7.5e-10 67.8 104 38.5
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 9.8e-10 67.4 59 54.2
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 9.8e-10 67.4 145 32.4
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 9.8e-10 67.4 145 31.7
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 1.3e-09 67.0 107 35.5
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 1.3e-09 67.0 124 40.3
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 1.3e-09 67.0 115 37.4
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 2.2e-09 66.2 62 51.6
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.2e-09 66.2 80 43.8
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 2.2e-09 66.2 122 38.5
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.2e-09 66.2 122 36.9
EL10As8g23917 Beta vulgaris HOM05D003805 ORTHO05D004300 2.8e-09 65.9 115 41.7
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 2.8e-09 65.9 122 36.9
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 2.8e-09 65.9 134 32.1
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.7e-09 65.5 80 41.2
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 3.7e-09 65.5 122 32.0
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 3.7e-09 65.5 49 57.1
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 3.7e-09 65.5 109 33.9
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 4.8e-09 65.1 122 38.5
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 6.3e-09 64.7 109 33.9
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 8.3e-09 64.3 76 38.2
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 8.3e-09 64.3 94 38.3
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 8.3e-09 64.3 138 34.8
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 1.4e-08 63.5 124 34.7
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.8e-08 63.2 60 50.0
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 1.8e-08 63.2 122 37.7
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 2.4e-08 62.8 122 34.4
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 2.4e-08 62.8 138 31.9
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 2.4e-08 62.8 109 33.9
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 4.1e-08 62.0 142 32.4
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 5.4e-08 61.6 124 36.3
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 7.0e-08 61.2 124 33.9
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 9.1e-08 60.8 84 38.1
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 9.1e-08 60.8 133 33.1
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 9.1e-08 60.8 122 37.7
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 2.0e-07 59.7 137 33.6
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 2.0e-07 59.7 124 35.5
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 2.7e-07 59.3 62 46.8
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 2.7e-07 59.3 62 46.8
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 2.7e-07 59.3 62 46.8
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 3.5e-07 58.9 61 47.5
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 3.5e-07 58.9 50 48.0
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.5e-07 58.9 121 32.2
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 4.5e-07 58.5 52 48.1
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 5.9e-07 58.2 133 33.1
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 5.9e-07 58.2 122 38.5
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 7.7e-07 57.8 141 31.9
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.0e-06 57.4 122 36.1
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.0e-06 57.4 122 35.2
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.3e-06 57.0 85 44.7
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 1.7e-06 56.6 148 30.4
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 1.7e-06 56.6 139 35.3
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.3e-06 56.2 61 42.6
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 2.3e-06 56.2 46 56.5
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 3.8e-06 55.5 109 34.9
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 3.8e-06 55.5 103 35.9
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 3.8e-06 55.5 121 34.7
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 3.8e-06 55.5 120 35.0
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 3.8e-06 55.5 125 33.6
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.8e-06 55.5 85 40.0
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.6e-06 54.7 53 45.3
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 8.6e-06 54.3 50 44.0
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 8.6e-06 54.3 130 33.1
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 8.6e-06 54.3 55 40.0


User provided reference genes

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