Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 2060.4 1020 100.0
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1487.2 1056 70.2
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1458.7 1015 70.7
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1450.3 1047 69.4
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1428.3 1015 69.1
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1426.0 1048 68.0
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1424.5 1022 68.8
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1412.5 1009 68.0
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1396.7 1016 66.1
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1390.9 1017 66.4
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1375.1 1014 66.2
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1362.4 1014 66.3
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1358.6 1014 66.1
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1354.3 1017 65.4
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1352.8 1019 65.1
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1351.7 1013 64.8
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1345.9 1041 64.6
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1345.5 1017 63.9
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1341.3 1045 65.4
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1340.5 1009 64.6
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1338.2 1017 64.2
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1335.5 1010 64.4
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1331.6 1013 63.3
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1326.2 1028 63.8
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1324.3 1125 59.6
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1304.3 1014 62.5
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1302.3 1013 63.0
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1296.2 1012 62.2
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1292.3 1011 62.6
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1290.0 1007 62.6
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1288.9 1014 63.3
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1287.7 1014 63.5
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1285.0 1013 61.9
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1284.2 1014 63.4
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1283.1 1018 61.9
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1281.9 1013 62.4
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1281.2 1015 63.1
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1280.8 1014 62.0
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1280.4 1021 62.0
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1280.4 1010 61.9
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1280.0 1029 61.9
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1280.0 1024 62.0
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1279.6 1005 62.1
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1277.7 1020 62.5
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1275.8 1020 61.7
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1275.8 1021 62.7
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1274.6 1010 62.3
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1270.4 1016 61.8
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1269.2 1023 61.5
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1268.4 1025 62.4
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1268.1 1017 61.7
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1266.1 1012 61.4
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1265.4 1007 61.6
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1260.4 1014 61.3
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1260.0 1017 60.6
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1258.8 1020 60.3
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1258.8 1024 60.3
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1258.4 1011 61.9
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1257.3 1010 61.4
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1256.5 1011 61.9
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1255.7 1011 61.9
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1255.4 1010 61.5
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1254.2 1011 61.6
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1253.0 1011 61.7
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1251.1 1013 60.3
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1246.9 1066 58.5
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1246.5 982 62.3
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1236.9 1018 60.2
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1236.9 1098 57.3
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1233.0 1015 59.7
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1226.1 1013 59.9
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1223.4 1031 60.2
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1222.6 1015 61.4
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1219.5 1062 57.9
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1218.4 1040 59.9
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1216.8 1014 59.3
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1207.6 1017 59.0
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1197.6 1014 58.1
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1195.6 1177 54.4
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1194.5 1014 57.9
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1170.6 1018 58.1
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1156.4 1016 56.4
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1150.6 1010 58.0
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1140.9 1025 56.5
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1139.0 1010 57.2
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1125.2 1013 56.3
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1119.4 1014 56.1
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1112.4 1008 55.0
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1093.6 1101 51.2
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1079.3 817 64.0
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 6.5e-308 1060.8 872 60.3
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 3.9e-297 1025.0 1016 53.1
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.6e-295 1019.6 1026 50.8
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 2.0e-269 932.9 987 51.1
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 5.4e-254 881.7 634 66.9
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 5.6e-251 871.7 1012 47.1
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 4.4e-240 835.5 864 52.0
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 8.3e-231 804.7 1016 42.2
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 4.3e-219 765.8 736 53.4
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 7.1e-214 748.4 707 54.2
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.6e-213 747.3 700 52.9
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 9.3e-206 721.5 824 48.1
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 2.9e-199 699.9 511 65.6
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 3.8e-199 699.5 727 51.3
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 3.8e-191 672.9 663 51.9
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 3.2e-190 669.8 837 42.2
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 7.6e-184 648.7 991 37.5
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 1.1e-179 634.8 529 61.8
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.5e-176 624.4 791 40.8
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 1.5e-176 624.4 1009 38.1
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 1.2e-173 614.8 511 58.7
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 3.8e-167 593.2 483 61.7
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 4.2e-166 589.7 596 51.5
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.9e-158 564.3 438 65.5
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 6.7e-156 555.8 506 55.5
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 5.2e-132 476.5 343 68.2
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.4e-121 441.8 355 62.0
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 1.2e-117 428.7 860 32.6
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 1.8e-116 424.9 448 48.9
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 1.9e-105 388.3 348 55.5
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 7.3e-102 376.3 351 54.1
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 3.2e-97 360.9 1155 28.2
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.2e-75 289.3 234 61.1
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 5.5e-73 280.4 975 26.8
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 1.9e-70 271.9 208 64.4
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 4.3e-70 270.8 177 75.1
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 7.2e-65 253.4 408 39.5
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 1.2e-59 236.1 1143 24.4
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 7.7e-59 233.4 289 45.3
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 1.3e-58 232.6 244 50.4
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 4.6e-56 224.2 235 51.9
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 1.7e-53 215.7 518 30.7
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 6.9e-52 210.3 183 54.6
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.8e-50 204.5 154 55.2
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 3.2e-49 201.4 165 57.0
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 2.3e-47 195.3 312 39.7
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 2.3e-39 168.7 177 51.4
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 2.4e-36 158.7 118 66.9
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.9e-33 149.1 191 43.5
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.5e-30 139.4 113 61.9
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 1.3e-29 136.3 100 62.0
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 2.2e-29 135.6 87 75.9
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 8.6e-26 123.6 90 65.6
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 6.1e-24 117.5 71 74.6
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 8.0e-24 117.1 101 57.4
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 8.0e-24 117.1 153 45.8
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 5.7e-22 110.9 156 43.6
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 9.8e-22 110.2 164 34.8
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 4.3e-17 94.7 118 43.2
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 5.6e-17 94.4 70 61.4
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 8.0e-16 90.5 70 54.3
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 1.4e-12 79.7 70 55.7
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 1.8e-12 79.3 48 60.4
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 2.5e-09 68.9 79 46.8
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 9.5e-09 67.0 100 41.0
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.6e-08 66.2 60 50.0
Lsat_1_v5_gn_5_99100 Lactuca sativa HOM05D000032 ORTHO05D015646 4.0e-07 61.6 227 27.3
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 6.8e-07 60.8 75 52.0


User provided reference genes

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