Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0002500 Simmondsia chinensis HOM05D008250 ORTHO05D010361 3.1e-23 110.9 55 100.0
COL.COLO4_11607 Corchorus olitorius HOM05D008250 ORTHO05D010361 2.5e-17 91.3 55 76.4
Atru.chr3.1053 Acer truncatum HOM05D008250 ORTHO05D010361 4.3e-17 90.5 55 74.5
Ciclev10026916m.g Citrus clementina HOM05D008250 ORTHO05D010361 5.7e-17 90.1 55 76.4
Hma1.2p1_1760F.1_g301220 Hydrangea macrophylla HOM05D008250 ORTHO05D010361 5.7e-17 90.1 55 76.4
GSVIVG01002948001 Vitis vinifera HOM05D008250 ORTHO05D010361 5.7e-17 90.1 53 81.1
GSVIVG01004436001 Vitis vinifera HOM05D008250 ORTHO05D010361 5.7e-17 90.1 53 81.1
Actinidia16414 Actinidia chinensis HOM05D008250 ORTHO05D010361 9.6e-17 89.4 54 75.9
Thecc.01G075500 Theobroma cacao HOM05D008250 ORTHO05D010361 1.3e-16 89.0 55 72.7
Potri.007G006700 Populus trichocarpa HOM05D008250 ORTHO05D010361 2.1e-16 88.2 55 76.4
HanXRQChr09g0255361 Helianthus annuus HOM05D008250 ORTHO05D010361 2.8e-16 87.8 54 74.1
Manes.12G117000 Manihot esculenta HOM05D008250 ORTHO05D010361 2.8e-16 87.8 55 72.7
Aqoxy6G02462 Aquilegia oxysepala HOM05D008250 ORTHO05D010361 6.2e-16 86.7 53 81.1
Gohir.D12G076400 Gossypium hirsutum HOM05D008250 ORTHO05D010361 6.2e-16 86.7 55 70.9
Gorai.008G085000 Gossypium raimondii HOM05D008250 ORTHO05D010361 6.2e-16 86.7 55 70.9
Gohir.A12G078200 Gossypium hirsutum HOM05D008250 ORTHO05D010361 8.2e-16 86.3 55 69.1
Lsat_1_v5_gn_4_159680 Lactuca sativa HOM05D008250 ORTHO05D010361 1.4e-15 85.5 55 69.1
MD02G1189100 Malus domestica HOM05D008250 ORTHO05D010361 2.4e-15 84.7 55 76.4
RcHm_v2.0_Chr2g0108561 Rosa chinensis HOM05D008250 ORTHO05D010361 2.4e-15 84.7 55 76.4
TWI74G1530 Tripterygium wilfordii HOM05D008250 ORTHO05D010361 3.1e-15 84.3 55 72.7
CiPaw.01G002500 Carya illinoinensis HOM05D008250 ORTHO05D010361 4.0e-15 84.0 56 75.0
BcaB02g09904 Brassica carinata HOM05D008250 ORTHO05D010361 5.3e-15 83.6 54 72.2
BcaC01g02825 Brassica carinata HOM05D008250 ORTHO05D010361 5.3e-15 83.6 54 72.2
BraA06t26203Z Brassica rapa HOM05D008250 ORTHO05D010361 5.3e-15 83.6 54 72.2
ClCG02G012200 Citrullus lanatus HOM05D008250 ORTHO05D010361 6.9e-15 83.2 54 70.4
Thhalv10005252m.g Eutrema salsugineum HOM05D008250 ORTHO05D010361 1.2e-14 82.4 54 70.4
Nn6g34516 Nelumbo nucifera HOM05D008250 ORTHO05D010361 1.5e-14 82.0 53 71.7
Solyc02g092130.2 Solanum lycopersicum HOM05D008250 ORTHO05D010361 2.0e-14 81.6 55 74.5
C03p59760 Brassica napus HOM05D008250 ORTHO05D010361 3.4e-14 80.9 54 70.4
C03p59770 Brassica napus HOM05D008250 ORTHO05D010361 3.4e-14 80.9 54 70.4
BolC3t18239H Brassica oleracea HOM05D008250 ORTHO05D010361 3.4e-14 80.9 54 70.4
BolC3t18240H Brassica oleracea HOM05D008250 ORTHO05D010361 3.4e-14 80.9 54 70.4
Sed0009961 Sechium edule HOM05D008250 ORTHO05D010361 3.4e-14 80.9 54 68.5
PGSC0003DMG400021408 Solanum tuberosum HOM05D008250 ORTHO05D010361 5.8e-14 80.1 55 72.7
Carub.0008s2677 Capsella rubella HOM05D008250 ORTHO05D010361 1.3e-13 79.0 61 63.9
Migut.H00327 Erythranthe guttata HOM05D008250 ORTHO05D010361 2.9e-13 77.8 46 78.3
AT5G65880 Arabidopsis thaliana HOM05D008250 ORTHO05D010361 3.8e-13 77.4 63 60.3
Prupe.6G217600 Prunus persica HOM05D008250 ORTHO05D010361 5.0e-13 77.0 55 67.3
Phvul.003G233500 Phaseolus vulgaris HOM05D008250 ORTHO05D010361 8.4e-13 76.3 58 63.8
AL8G43594 Arabidopsis lyrata HOM05D008250 ORTHO05D010361 1.1e-12 75.9 56 66.1
Lalb_Chr05g0230301 Lupinus albus HOM05D008250 ORTHO05D010361 1.4e-12 75.5 58 67.2
CARHR279880 Cardamine hirsuta HOM05D008250 ORTHO05D010361 1.9e-12 75.1 50 74.0
SEGI_25339 Sequoiadendron giganteum HOM05D008250 ORTHO05D010361 1.9e-12 75.1 53 71.7
Potri.014G006850 Populus trichocarpa HOM05D008250 ORTHO05D010361 2.7e-11 71.2 47 70.2
CsaV3_2G016360 Cucumis sativus L. HOM05D008250 ORTHO05D010361 1.3e-10 68.9 37 81.1
Glyma.05G107700 Glycine max HOM05D008250 ORTHO05D010361 3.9e-10 67.4 38 76.3
CDE02G1785 Ceratophyllum demersum HOM05D008250 ORTHO05D010361 6.7e-10 66.6 53 60.4
Glyma.17G159100 Glycine max HOM05D008250 ORTHO05D010361 1.5e-09 65.5 37 75.7
Haze_15258 Corylus avellana HOM05D008250 ORTHO05D010361 1.9e-09 65.1 35 85.7
CSS0002791 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 3.3e-09 64.3 37 78.4
CSS0014718 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 3.3e-09 64.3 37 78.4
TPR.G3717 Trifolium pratense HOM05D008250 ORTHO05D010361 3.3e-09 64.3 35 77.1
Lj4g0012638 Lotus japonicus HOM05D008250 ORTHO05D010361 4.3e-09 63.9 37 73.0
SGA_v2.0_scaffold15G07489 Striga asiatica HOM05D008250 ORTHO05D010361 4.3e-09 63.9 36 77.8
arahy.Tifrunner.gnm1.ann1.IKZ63P Arachis hypogaea HOM05D008250 ORTHO05D010361 5.7e-09 63.5 34 76.5
arahy.Tifrunner.gnm1.ann1.L5XXFX Arachis hypogaea HOM05D008250 ORTHO05D010361 5.7e-09 63.5 34 76.5
Medtr4g097410 Medicago truncatula HOM05D008250 ORTHO05D010361 9.7e-09 62.8 59 52.5
Psat4g080920 Pisum sativum HOM05D008250 ORTHO05D010361 1.3e-08 62.4 34 76.5
Rhsim08G0091900 Rhododendron simsii HOM05D008250 ORTHO05D010361 3.7e-08 60.8 37 73.0
Os03g0675700 Oryza sativa ssp. japonica HOM05D008250 ORTHO05D010361 2.4e-07 58.2 50 56.0
DCAR_021460 Daucus carota HOM05D008250 ORTHO05D010361 5.3e-07 57.0 37 70.3
A06p32730 Brassica napus HOM05D008250 ORTHO05D010361 9.0e-07 56.2 36 69.4
Aa31LG1G16230 Aethionema arabicum HOM05D008250 ORTHO05D010361 1.5e-06 55.5 30 76.7
AagrBONN_evm.TU.Sc2ySwM_362.1884 Anthoceros agrestis HOM05D063975 ORTHO05D010361 7.7e-06 53.1 46 58.7


User provided reference genes

Program Settings