Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 2416.0 1250 100.0
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1490.3 1252 62.5
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1441.8 1246 60.8
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1398.6 1245 59.3
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1392.1 1240 59.3
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1357.4 1248 58.8
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1320.8 1248 57.6
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1286.6 1264 56.1
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1270.0 1254 56.2
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1269.6 1254 55.3
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1266.5 1268 54.6
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1260.4 1245 54.8
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1258.8 1255 55.7
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1256.5 1253 55.1
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1254.6 1244 55.4
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1253.0 1265 54.5
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1243.0 1246 54.3
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1236.1 1249 54.8
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1235.7 1249 54.3
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1233.4 1252 54.4
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1228.8 1252 53.8
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1225.3 1259 53.9
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1225.3 1261 53.3
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1211.8 1242 53.6
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1210.3 1249 54.0
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1208.4 1242 52.3
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1207.2 1242 52.4
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1206.0 1242 52.3
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1193.7 1260 53.3
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1192.6 1252 53.0
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1189.1 1252 52.3
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1180.2 1252 52.3
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1179.5 1256 52.4
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1177.5 1272 51.7
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1176.8 1262 51.9
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1167.9 1251 52.5
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1165.2 1251 52.0
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1164.4 1189 53.7
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1163.7 1250 52.4
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1148.3 1248 52.2
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1147.1 1252 51.5
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1136.7 1264 50.3
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1135.9 1110 55.9
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1134.0 1268 50.1
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1131.3 1257 50.7
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1129.8 983 59.4
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1128.2 1247 50.9
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1127.9 1106 55.7
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1124.4 1261 50.8
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1124.0 1254 49.4
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1124.0 1247 50.9
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1120.9 1252 49.4
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1119.4 1251 50.3
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1117.8 1248 49.0
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1117.1 1250 49.3
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1116.3 1262 48.8
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1108.2 1244 49.0
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1107.4 1240 50.2
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1106.7 1246 49.2
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1105.5 1252 49.0
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1105.1 1254 49.9
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1104.7 1260 49.2
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1098.2 1242 49.5
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1096.6 1242 48.8
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1094.7 1251 48.4
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1093.2 1244 48.6
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1092.4 1255 48.8
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1091.6 1261 49.1
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 0.0e+00 1087.0 1297 48.4
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1083.6 1247 50.1
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1082.4 1249 48.9
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1077.8 1249 48.6
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 0.0e+00 1076.2 1262 48.8
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 7.7e-311 1070.8 1251 48.8
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 2.2e-310 1069.3 1183 51.4
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 8.5e-310 1067.4 1252 49.8
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 2.7e-308 1062.4 1244 47.7
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 2.7e-308 1062.4 1241 48.1
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 1.6e-305 1053.1 1000 57.4
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 8.2e-297 1024.2 1269 47.0
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 3.4e-295 1018.8 1271 46.6
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 6.5e-294 1014.6 1261 47.1
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 7.2e-293 1011.1 1258 47.1
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 1.6e-292 1010.0 937 58.6
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 3.0e-291 1005.7 1258 46.2
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 4.4e-290 1001.9 1259 46.8
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 8.2e-289 997.7 939 57.8
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 2.5e-277 959.5 1266 45.3
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.8e-267 926.8 1249 44.0
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 5.2e-267 925.2 873 58.3
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 8.3e-265 917.9 1039 48.8
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 5.4e-264 915.2 1201 44.6
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 7.8e-231 805.1 846 52.8
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 5.6e-221 772.3 1294 38.6
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 9.9e-218 761.5 1236 40.0
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 1.8e-211 740.7 1009 45.9
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 1.4e-208 731.1 1248 37.6
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 6.0e-207 725.7 942 46.1
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 2.3e-198 697.2 899 45.3
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 1.1e-171 608.6 773 43.3
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 8.2e-164 582.4 894 39.9
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 7.0e-163 579.3 768 43.1
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 8.5e-161 572.4 1292 33.2
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.2e-159 568.5 573 52.9
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 8.3e-148 529.3 776 42.3
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 1.0e-142 512.3 433 64.7
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.3e-137 495.4 636 43.7
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 8.6e-113 412.9 602 41.0
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 3.6e-111 407.5 363 62.0
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 6.0e-106 390.2 351 62.4
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 5.1e-105 387.1 344 63.7
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 1.6e-103 382.1 340 63.2
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 9.6e-96 356.3 236 76.3
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 9.3e-91 339.7 453 42.2
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.7e-90 338.2 651 33.5
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 2.2e-79 302.0 499 34.9
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 5.5e-67 260.8 370 39.7
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 2.7e-66 258.5 550 32.0
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-63 248.1 336 38.4
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 2.9e-52 211.8 402 31.6
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 7.2e-51 207.2 288 38.2
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 9.7e-48 196.8 376 37.5
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.6e-45 189.5 293 39.9
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 2.8e-31 142.1 313 34.8
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 1.2e-29 136.7 169 42.0
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 5.4e-22 111.3 203 38.9
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 5.6e-19 101.3 362 29.0
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 9.8e-16 90.5 112 41.1
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 9.8e-16 90.5 112 42.0
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 8.3e-15 87.4 137 35.8
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 1.4e-14 86.7 119 39.5
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 5.1e-12 78.2 113 40.7
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 6.2e-10 71.2 59 59.3
Zm00001eb060820 Zea mays HOM05D000726 ORTHO05D007554 1.9e-06 59.7 144 29.2


User provided reference genes

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