Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 2.8e-264 914.8 499 100.0
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 5.8e-161 571.6 529 62.0
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 1.7e-160 570.1 498 63.3
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 8.4e-160 567.8 508 63.2
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 3.3e-156 555.8 511 62.0
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 2.2e-152 543.1 502 58.8
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 1.1e-151 540.8 502 59.0
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 7.9e-150 534.6 497 60.4
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 1.9e-148 530.0 500 60.8
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 9.6e-148 527.7 500 62.2
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 2.1e-147 526.6 528 56.1
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 4.0e-146 522.3 505 59.0
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 2.0e-145 520.0 500 60.6
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 4.5e-145 518.8 499 61.9
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 2.2e-144 516.5 501 60.1
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 1.4e-143 513.8 501 57.1
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 1.4e-143 513.8 506 56.5
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 2.5e-143 513.1 506 57.5
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 2.1e-142 510.0 501 58.3
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 2.1e-142 510.0 501 58.3
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 7.9e-142 508.1 500 59.6
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 3.9e-141 505.8 509 58.0
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 8.7e-141 504.6 502 55.4
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 9.6e-140 501.1 501 57.5
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 2.4e-138 496.5 498 57.0
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 3.1e-138 496.1 503 55.5
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 3.1e-138 496.1 507 56.2
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 4.1e-138 495.7 508 55.1
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 6.9e-138 495.0 508 56.7
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 6.9e-138 495.0 501 56.5
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 9.0e-138 494.6 505 57.8
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 1.2e-137 494.2 500 54.6
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 1.5e-137 493.8 497 53.7
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 5.8e-137 491.9 501 54.5
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 1.0e-136 491.1 504 56.9
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 2.9e-136 489.6 499 57.5
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 3.8e-136 489.2 499 58.3
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 8.4e-136 488.0 510 55.3
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.4e-135 487.3 498 58.0
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 1.4e-135 487.3 497 54.9
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 2.5e-135 486.5 498 54.6
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 7.1e-135 485.0 507 57.0
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 9.3e-135 484.6 498 58.2
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 2.1e-134 483.4 500 54.0
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 4.6e-134 482.3 505 55.0
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 4.6e-134 482.3 500 58.8
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 7.9e-134 481.5 502 59.0
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 7.9e-134 481.5 503 59.2
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 1.0e-133 481.1 501 55.7
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 1.3e-133 480.7 507 57.6
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 1.8e-133 480.3 497 55.1
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 1.1e-132 477.6 502 58.0
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 1.5e-132 477.2 497 55.9
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 3.3e-132 476.1 503 57.9
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 7.4e-132 474.9 502 59.4
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 1.6e-131 473.8 498 52.4
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 2.2e-131 473.4 505 53.5
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 2.8e-131 473.0 501 55.5
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 2.8e-131 473.0 504 54.6
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 4.8e-131 472.2 506 55.3
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 1.1e-130 471.1 499 54.5
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.1e-130 471.1 504 54.4
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 1.8e-130 470.3 503 53.1
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 3.1e-130 469.5 500 58.4
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 2.0e-129 466.8 498 57.0
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 4.5e-129 465.7 499 53.5
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.0e-128 464.5 502 55.2
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.3e-128 464.2 492 56.5
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 3.8e-128 462.6 501 56.5
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 3.8e-128 462.6 500 56.8
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 5.0e-128 462.2 541 51.9
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 8.5e-128 461.5 499 57.1
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 8.5e-128 461.5 500 53.4
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 8.5e-128 461.5 385 61.0
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 1.1e-127 461.1 506 54.2
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 1.9e-127 460.3 484 55.0
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 2.5e-127 459.9 500 58.4
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 2.5e-127 459.9 500 58.4
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 2.5e-127 459.9 501 53.1
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 3.2e-127 459.5 511 52.8
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 5.5e-127 458.8 508 53.0
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 7.2e-127 458.4 520 52.5
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 1.6e-126 457.2 498 55.2
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 1.0e-125 454.5 501 55.1
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 2.3e-125 453.4 501 57.5
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 8.2e-123 444.9 486 52.7
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 5.3e-122 442.2 504 53.0
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 2.0e-121 440.3 502 51.0
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 5.9e-121 438.7 500 55.8
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 3.8e-120 436.0 499 54.1
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 6.5e-120 435.3 499 50.9
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 3.2e-119 433.0 504 52.8
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 1.6e-118 430.6 435 59.8
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 3.7e-115 419.5 421 55.8
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 5.3e-114 415.6 501 48.7
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 5.3e-114 415.6 444 54.5
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 1.2e-113 414.5 379 57.3
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 5.9e-113 412.1 503 48.3
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 3.8e-112 409.5 500 50.6
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.8e-109 400.6 427 57.1
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.8e-107 393.3 442 55.2
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 5.0e-104 382.5 447 52.3
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 5.2e-93 345.9 335 54.3
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 1.3e-88 331.3 519 42.4
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 2.9e-83 313.5 412 45.6
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 3.0e-80 303.5 337 54.0
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 9.8e-76 288.5 504 38.3
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 4.9e-75 286.2 417 43.2
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 1.2e-73 281.6 509 38.9
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 1.9e-71 274.2 335 49.6
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 5.2e-69 266.2 179 74.3
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 2.9e-67 260.4 498 38.2
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 1.4e-66 258.1 334 48.2
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 9.2e-58 228.8 335 41.5
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 2.8e-54 217.2 229 54.6
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 8.1e-54 215.7 245 53.5
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 3.1e-53 213.8 218 54.6
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.1e-50 205.3 232 53.0
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 1.4e-45 188.3 320 37.5
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 1.4e-42 178.3 253 43.9
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 3.5e-41 173.7 336 38.4
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 3.5e-33 147.1 160 55.6
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 3.9e-32 143.7 297 34.0
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 1.4e-29 135.2 138 50.0
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 3.2e-26 124.0 194 49.5
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 3.3e-23 114.0 111 52.3
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 4.5e-20 103.6 194 37.6
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 4.5e-20 103.6 94 52.1
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 1.1e-13 82.4 262 25.6
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 3.1e-13 80.9 72 56.9
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 2.0e-07 61.6 199 27.1
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 1.7e-06 58.5 126 31.0
Aa31sc37G10 Aethionema arabicum HOM05D002747 ORTHO05D003069 8.2e-06 56.2 57 40.4
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 8.2e-06 56.2 125 29.6


User provided reference genes

Program Settings