Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 2348.2 1246 100.0
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 2.7e-247 859.8 1286 43.6
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 6.1e-244 848.6 1334 42.4
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.0e-243 847.8 1332 41.9
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 1.4e-243 847.4 1331 42.1
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 2.3e-243 846.7 1325 42.1
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.3e-241 840.9 1255 42.0
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 3.2e-240 836.3 1327 41.3
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 4.1e-240 835.9 1334 41.6
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 5.6e-237 825.5 1352 39.9
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 7.3e-237 825.1 1349 40.5
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 1.2e-234 817.8 1343 41.5
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 1.5e-234 817.4 1345 41.3
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 2.2e-233 813.5 1326 41.5
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 2.9e-233 813.1 1225 43.2
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 5.4e-232 808.9 1354 39.7
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 4.6e-231 805.8 1325 40.4
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 6.6e-230 802.0 1338 39.6
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 6.2e-228 795.4 1344 40.8
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 1.4e-227 794.3 1345 41.2
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 2.3e-227 793.5 1349 40.5
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 8.9e-227 791.6 1313 41.9
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 2.6e-226 790.0 1345 41.2
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 3.4e-226 789.6 1350 38.8
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 1.4e-224 784.3 1351 38.7
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 7.1e-224 781.9 1337 39.4
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 2.7e-223 780.0 1278 40.8
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 6.0e-223 778.9 1345 38.4
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 6.6e-222 775.4 1342 37.9
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 3.6e-220 769.6 1326 39.5
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 1.8e-219 767.3 1334 38.2
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 4.4e-218 762.7 1336 38.2
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 4.9e-217 759.2 1274 40.7
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 2.4e-216 756.9 1328 38.4
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 8.7e-214 748.4 1330 38.4
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 4.3e-213 746.1 1341 38.0
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 1.4e-211 741.1 1326 38.6
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 1.3e-209 734.6 1336 36.6
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 8.4e-209 731.9 1357 40.4
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 4.6e-207 726.1 1295 38.5
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 4.6e-207 726.1 1441 36.2
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 1.1e-205 721.5 1279 37.0
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 4.8e-204 716.1 1288 37.0
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 9.0e-203 711.8 1316 36.3
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 1.2e-202 711.4 1316 36.5
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 2.6e-202 710.3 1314 36.1
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 3.4e-202 709.9 1249 39.2
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 3.4e-202 709.9 1315 36.5
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 7.6e-202 708.8 1275 38.7
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 2.2e-201 707.2 1320 36.3
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 1.9e-200 704.1 1322 38.7
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 5.4e-200 702.6 1180 38.6
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 1.2e-199 701.4 1292 39.1
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 1.0e-198 698.4 1321 35.3
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 1.5e-197 694.5 1155 38.9
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 1.5e-197 694.5 1321 34.9
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 7.4e-197 692.2 1197 39.7
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 9.6e-197 691.8 1302 37.6
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 8.1e-196 688.7 1254 36.7
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 4.0e-195 686.4 1295 36.8
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 1.5e-194 684.5 1216 38.2
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 1.7e-193 681.0 1340 37.7
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 4.2e-192 676.4 1274 37.5
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 5.5e-192 676.0 1310 37.3
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 5.1e-190 669.5 1297 38.4
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 4.8e-188 662.9 1298 36.5
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 5.3e-187 659.4 1286 37.0
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 2.9e-185 653.7 1329 35.6
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 3.8e-185 653.3 1273 37.3
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 1.4e-184 651.4 1290 36.2
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 1.3e-180 638.3 1110 39.6
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 2.8e-180 637.1 1226 37.4
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 3.4e-178 630.2 1300 35.9
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 1.0e-177 628.6 1303 36.1
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 1.3e-177 628.2 1281 35.0
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 5.0e-177 626.3 1319 35.3
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 5.3e-171 606.3 1245 34.8
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.2e-170 605.1 1272 33.6
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 2.0e-170 604.4 1305 34.9
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 7.7e-162 575.9 1308 33.9
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 9.7e-157 558.9 1318 33.2
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 1.3e-156 558.5 1328 33.5
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 5.9e-154 549.7 1044 35.4
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 2.2e-148 531.2 993 35.3
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.5e-141 508.4 1217 32.5
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 2.0e-138 498.0 970 36.0
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 4.4e-133 480.3 979 33.6
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 4.6e-130 470.3 704 41.1
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 1.3e-129 468.8 1081 32.7
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 1.7e-124 451.8 1093 32.7
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 2.7e-122 444.5 1259 29.1
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 7.3e-120 436.4 701 42.5
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 2.2e-108 398.3 669 40.1
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 1.9e-107 395.2 710 41.4
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 1.3e-105 389.0 707 39.9
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 6.6e-105 386.7 614 38.4
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 3.0e-97 361.3 563 40.9
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.5e-93 349.0 696 37.9
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 8.4e-92 343.2 750 33.2
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 3.9e-89 334.3 599 36.6
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 4.5e-85 320.9 763 35.0
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 5.5e-83 313.9 675 32.6
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 2.6e-77 295.0 925 27.7
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 2.3e-73 282.0 645 33.3
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 2.1e-71 275.4 339 46.3
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 4.5e-69 267.7 805 26.7
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 2.6e-61 241.9 641 34.8
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 1.1e-59 236.5 679 32.7
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 3.9e-57 228.0 323 39.0
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 4.8e-55 221.1 128 88.3
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.0e-53 215.7 629 27.3
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.9e-51 209.1 917 26.1
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.6e-50 206.1 276 43.8
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 1.5e-48 199.5 278 43.2
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 6.3e-31 141.0 537 29.1
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 5.9e-29 134.4 527 30.9
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 1.0e-20 107.1 392 25.0
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 5.0e-20 104.8 267 30.3
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 1.1e-19 103.6 143 36.4
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 8.0e-18 97.4 385 23.9
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 8.0e-18 97.4 519 32.6
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 4.4e-16 91.7 117 49.6
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 2.2e-15 89.4 507 26.8
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 2.4e-14 85.9 501 28.9
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 1.2e-13 83.6 203 35.5
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 1.6e-13 83.2 514 28.6
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 2.0e-13 82.8 514 26.8
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 4.6e-13 81.6 514 27.0
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 3.0e-12 79.0 496 27.6
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 3.0e-12 79.0 496 27.6
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 5.0e-12 78.2 589 31.2
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 9.5e-11 73.9 303 21.1
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 2.8e-10 72.4 512 29.9
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 3.6e-10 72.0 438 27.2
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 6.2e-10 71.2 81 45.7
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 6.8e-09 67.8 330 22.4
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.7e-07 63.2 156 30.1
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.7e-07 63.2 156 30.1
GSVIVG01002722001 Vitis vinifera HOM05D006144 ORTHO05D006357 6.4e-07 61.2 86 37.2


User provided reference genes

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