Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0001410 Simmondsia chinensis HOM05D001841 ORTHO05D001767 2.1e-138 495.7 253 100.0
Nn5g30193 Nelumbo nucifera HOM05D001841 ORTHO05D001767 8.1e-18 95.1 359 31.8
TAR381G0762 Trochodendron aralioides HOM05D001841 ORTHO05D001767 3.1e-17 93.2 361 29.6
MBI02_g21198_MAGBIO Magnolia biondii HOM05D001841 ORTHO05D001767 8.9e-17 91.7 334 29.0
TAR625G0113 Trochodendron aralioides HOM05D001841 ORTHO05D001767 1.2e-16 91.3 353 29.2
Lalb_Chr05g0219031 Lupinus albus HOM05D001841 ORTHO05D001767 1.5e-16 90.9 351 30.5
PSO541G1997 Papaver somniferum HOM05D001841 ORTHO05D001767 7.6e-16 88.6 347 28.2
DCAR_029019 Daucus carota HOM05D001841 ORTHO05D001767 1.3e-15 87.8 236 33.5
MSTRG.16762 Avicennia marina HOM05D001841 ORTHO05D001767 1.7e-15 87.4 340 27.9
PSO675G9020 Papaver somniferum HOM05D001841 ORTHO05D001767 2.4e-14 83.6 354 27.7
TAR376G0142 Trochodendron aralioides HOM05D001841 ORTHO05D001767 1.2e-13 81.3 302 28.5
SGA_v2.0_scaffold32G13089 Striga asiatica HOM05D001841 ORTHO05D001767 3.5e-13 79.7 320 27.2
vmacro19487 Vaccinium macrocarpon HOM05D001841 ORTHO05D001767 1.7e-12 77.4 359 27.3
Dinv23581 Davidia involucrata HOM05D001841 ORTHO05D001767 3.0e-12 76.6 342 29.2
Lj4g0016353 Lotus japonicus HOM05D001841 ORTHO05D001767 3.9e-12 76.3 350 28.0
CANSAT25G1334 Cannabis sativa HOM05D001841 ORTHO05D001767 8.7e-12 75.1 390 26.9
QL11p037275 Quercus lobata HOM05D001841 ORTHO05D001767 3.3e-11 73.2 377 28.4
ClCG02G005790 Citrullus lanatus HOM05D001841 ORTHO05D001767 4.3e-11 72.8 344 27.9
PGR142G1787 Punica granatum HOM05D001841 ORTHO05D001767 4.3e-11 72.8 387 23.5
Cfa005454 Carpinus fangiana HOM05D001841 ORTHO05D001767 9.6e-11 71.6 383 26.9
MSTRG.20139 Avicennia marina HOM05D001841 ORTHO05D001767 1.2e-10 71.2 360 26.9
Gorai.013G042200 Gossypium raimondii HOM05D001841 ORTHO05D001767 1.2e-10 71.2 359 26.5
Prupe.8G119300 Prunus persica HOM05D001841 ORTHO05D001767 1.2e-10 71.2 378 26.5
Actinidia27944 Actinidia chinensis HOM05D000058 ORTHO05D001767 1.6e-10 70.9 324 28.4
CARHR106090 Cardamine hirsuta HOM05D001841 ORTHO05D001767 1.6e-10 70.9 309 28.2
CDE10G0885 Ceratophyllum demersum HOM05D000371 ORTHO05D006340 1.6e-10 70.9 202 31.2
Sp3g29010 Schrenkiella parvula HOM05D001841 ORTHO05D001767 1.6e-10 70.9 303 27.4
BcaB03g16318 Brassica carinata HOM05D001841 ORTHO05D001767 3.6e-10 69.7 303 27.1
Gohir.D13G037500 Gossypium hirsutum HOM05D001841 ORTHO05D001767 6.2e-10 68.9 359 26.2
HanXRQChr11g0324211 Helianthus annuus HOM05D001841 ORTHO05D001767 6.2e-10 68.9 284 27.1
Eucgr.I01168 Eucalyptus grandis HOM05D001841 ORTHO05D001767 8.1e-10 68.6 175 34.9
Lalb_Chr16g0384591 Lupinus albus HOM05D001841 ORTHO05D001767 8.1e-10 68.6 340 27.6
AT2G15760 Arabidopsis thaliana HOM05D001841 ORTHO05D001767 1.8e-09 67.4 314 27.4
Gohir.A13G039000 Gossypium hirsutum HOM05D001841 ORTHO05D001767 2.4e-09 67.0 354 26.6
Sabra14G0024800 Salix brachista HOM05D001841 ORTHO05D001767 3.1e-09 66.6 168 35.1
Haze_01864 Corylus avellana HOM05D001841 ORTHO05D001767 4.0e-09 66.2 382 27.2
BcaC06g36083 Brassica carinata HOM05D001841 ORTHO05D001767 6.9e-09 65.5 299 25.4
C07p08040 Brassica napus HOM05D001841 ORTHO05D001767 6.9e-09 65.5 299 25.4
BolC7t41221H Brassica oleracea HOM05D001841 ORTHO05D001767 6.9e-09 65.5 299 25.4
Nitab4.5_0000736g0050 Nicotiana tabacum HOM05D001841 ORTHO05D001767 6.9e-09 65.5 335 26.6
Sopen03g031780 Solanum pennellii HOM05D001841 ORTHO05D001767 6.9e-09 65.5 318 27.4
Lsat_1_v5_gn_9_110401 Lactuca sativa HOM05D001841 ORTHO05D001767 9.0e-09 65.1 309 27.5
Oeu007260.1 Olea europaea HOM05D001841 ORTHO05D001767 1.2e-08 64.7 334 26.6
Cc02_g18570 Coffea canephora HOM05D001841 ORTHO05D001767 1.5e-08 64.3 321 25.9
BraA07t28298Z Brassica rapa HOM05D001841 ORTHO05D001767 2.0e-08 63.9 301 25.9
Eucgr.F00024 Eucalyptus grandis HOM05D001841 ORTHO05D001767 3.4e-08 63.2 238 32.4
ATR0097G009 Amborella trichopoda HOM05D001841 ORTHO05D001767 4.4e-08 62.8 354 23.7
Solyc03g112700.1 Solanum lycopersicum HOM05D001841 ORTHO05D001767 4.4e-08 62.8 318 27.4
Cpa.g.sc376.7 Carica papaya HOM05D001841 ORTHO05D001767 5.8e-08 62.4 175 32.6
CsaV3_7G008710 Cucumis sativus L. HOM05D001841 ORTHO05D001767 5.8e-08 62.4 359 25.9
Potri.009G105400 Populus trichocarpa HOM05D001841 ORTHO05D001767 5.8e-08 62.4 378 25.9
Thecc.02G097700 Theobroma cacao HOM05D001841 ORTHO05D001767 5.8e-08 62.4 391 24.8
AL3G47510 Arabidopsis lyrata HOM05D001841 ORTHO05D001767 7.6e-08 62.0 314 26.1
Nitab4.5_0001413g0010 Nicotiana tabacum HOM05D001841 ORTHO05D001767 9.9e-08 61.6 217 32.3
Potri.004G143500 Populus trichocarpa HOM05D001841 ORTHO05D001767 9.9e-08 61.6 377 26.0
Duzib132G0939 Durio zibethinus HOM05D001841 ORTHO05D001767 1.3e-07 61.2 394 25.1
Migut.B00315 Erythranthe guttata HOM05D001841 ORTHO05D001767 1.3e-07 61.2 383 26.9
GSVIVG01009563001 Vitis vinifera HOM05D001841 ORTHO05D001767 1.7e-07 60.8 225 30.7
BcaB07g31782 Brassica carinata HOM05D001841 ORTHO05D001767 2.2e-07 60.5 305 26.6
Duzib052G0781 Durio zibethinus HOM05D001841 ORTHO05D001767 2.2e-07 60.5 392 25.0
Manes.15G142400 Manihot esculenta HOM05D001841 ORTHO05D001767 2.2e-07 60.5 398 24.6
Atru.chr13.625 Acer truncatum HOM05D001841 ORTHO05D001767 2.9e-07 60.1 250 28.4
COL.COLO4_26453 Corchorus olitorius HOM05D001841 ORTHO05D001767 2.9e-07 60.1 276 27.9
MELO3C018439.2 Cucumis melo HOM05D001841 ORTHO05D001767 2.9e-07 60.1 359 25.9
Nn1g05855 Nelumbo nucifera HOM05D001841 ORTHO05D001767 2.9e-07 60.1 358 26.0
Thhalv10022784m.g Eutrema salsugineum HOM05D001841 ORTHO05D001767 3.8e-07 59.7 311 25.1
Sabra09G0080500 Salix brachista HOM05D001841 ORTHO05D001767 3.8e-07 59.7 377 25.5
PGSC0003DMG400018102 Solanum tuberosum HOM05D001841 ORTHO05D001767 3.8e-07 59.7 240 30.8
Duzib248G1481 Durio zibethinus HOM05D001841 ORTHO05D001767 4.9e-07 59.3 402 23.6
RcHm_v2.0_Chr6g0258711 Rosa chinensis HOM05D001841 ORTHO05D001767 4.9e-07 59.3 389 25.2
SalBow6G4282 Salvia bowleyana HOM05D001841 ORTHO05D001767 4.9e-07 59.3 342 26.0
BcaB06g27216 Brassica carinata HOM05D001841 ORTHO05D001767 6.4e-07 58.9 205 27.8
Dinv42133 Davidia involucrata HOM05D001841 ORTHO05D001767 6.4e-07 58.9 253 29.6
MD10G1090600 Malus domestica HOM05D001841 ORTHO05D001767 6.4e-07 58.9 367 25.6
Manes.17G093500 Manihot esculenta HOM05D001841 ORTHO05D001767 6.4e-07 58.9 388 25.5
A09p10870 Brassica napus HOM05D001841 ORTHO05D001767 8.4e-07 58.5 304 28.0
BraA09t36727Z Brassica rapa HOM05D001841 ORTHO05D001767 8.4e-07 58.5 304 28.0
FAN24G1402 Fragaria x ananassa HOM05D001841 ORTHO05D001767 1.1e-06 58.2 383 25.3
Peaxi162Scf00684g00566 Petunia axillaris HOM05D001841 ORTHO05D001767 1.1e-06 58.2 209 29.7
Actinidia12979 Actinidia chinensis HOM05D001841 ORTHO05D001767 1.4e-06 57.8 316 25.9
Potri.014G034900 Populus trichocarpa HOM05D001841 ORTHO05D001767 1.4e-06 57.8 226 28.8
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 1.9e-06 57.4 157 32.5
Hma1.2p1_0370F.1_g138000 Hydrangea macrophylla HOM05D001841 ORTHO05D001767 1.9e-06 57.4 238 33.2
Medtr4g086620 Medicago truncatula HOM05D001841 ORTHO05D001767 1.9e-06 57.4 313 28.1
MBI06_g08193_MAGBIO Magnolia biondii HOM05D001841 ORTHO05D001767 2.4e-06 57.0 309 25.6
QL02p006055 Quercus lobata HOM05D001841 ORTHO05D001767 2.4e-06 57.0 216 29.6
BcaC04g23039 Brassica carinata HOM05D001841 ORTHO05D001767 3.2e-06 56.6 304 27.3
C09p12820 Brassica napus HOM05D001841 ORTHO05D001767 3.2e-06 56.6 304 27.3
BolC9t54171H Brassica oleracea HOM05D001841 ORTHO05D001767 3.2e-06 56.6 304 27.3
FvH4_2g06670 Fragaria vesca HOM05D001841 ORTHO05D001767 3.2e-06 56.6 384 25.3
TWI56G0311 Tripterygium wilfordii HOM05D001841 ORTHO05D001767 3.2e-06 56.6 199 30.7
FAN15G3466 Fragaria x ananassa HOM05D001841 ORTHO05D001767 4.2e-06 56.2 384 25.3
HanXRQChr02g0038421 Helianthus annuus HOM05D001841 ORTHO05D001767 4.2e-06 56.2 261 28.0
Sabra04G0095000 Salix brachista HOM05D001841 ORTHO05D001767 4.2e-06 56.2 356 27.5
CARHR120050 Cardamine hirsuta HOM05D001841 ORTHO05D001767 5.4e-06 55.8 129 34.1
CDE10G1361 Ceratophyllum demersum HOM05D001841 ORTHO05D001767 5.4e-06 55.8 290 25.9
ECA232G5028 Erigeron canadensis HOM05D001841 ORTHO05D001767 5.4e-06 55.8 297 26.6
Sp4g07730 Schrenkiella parvula HOM05D001841 ORTHO05D001767 5.4e-06 55.8 161 29.2
A07p05070 Brassica napus HOM05D001841 ORTHO05D001767 7.1e-06 55.5 252 25.4
CDE10G1358 Ceratophyllum demersum HOM05D001841 ORTHO05D001767 7.1e-06 55.5 290 24.1
FAN20G1156 Fragaria x ananassa HOM05D001841 ORTHO05D001767 7.1e-06 55.5 383 25.6
FAN20G1917 Fragaria x ananassa HOM05D001841 ORTHO05D001767 7.1e-06 55.5 339 25.1
Lsat_1_v5_gn_1_19921 Lactuca sativa HOM05D001841 ORTHO05D001767 7.1e-06 55.5 264 26.5


User provided reference genes

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