Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 1.0e-122 443.4 217 100.0
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 2.6e-105 385.6 218 87.6
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.7e-104 382.9 218 87.2
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 1.4e-103 379.8 219 83.6
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 2.7e-102 375.6 218 83.5
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.9e-101 372.1 219 81.3
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 2.9e-101 372.1 219 81.3
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 5.0e-101 371.3 219 81.7
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 1.5e-100 369.8 219 80.4
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 3.2e-100 368.6 219 82.2
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 5.5e-100 367.9 219 80.4
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 5.5e-100 367.9 219 82.6
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 7.2e-100 367.5 219 81.3
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 7.2e-100 367.5 219 81.3
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 9.4e-100 367.1 219 83.1
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.2e-99 366.7 218 82.1
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 1.2e-99 366.7 219 79.9
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 3.6e-99 365.2 220 81.8
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 8.0e-99 364.0 218 80.7
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 3.0e-98 362.1 218 79.8
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 5.2e-98 361.3 219 81.3
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.5e-97 359.8 218 80.7
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 3.4e-97 358.6 218 79.8
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 9.8e-97 357.1 220 80.5
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 1.3e-96 356.7 219 80.8
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 3.7e-96 355.1 221 81.4
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 8.3e-96 354.0 218 79.8
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 3.1e-95 352.1 219 80.4
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 3.1e-95 352.1 219 76.7
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 3.1e-95 352.1 221 79.2
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 4.1e-95 351.7 219 81.7
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.1e-95 351.7 221 79.2
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.4e-95 351.3 221 78.7
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 5.4e-95 351.3 219 79.5
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 7.0e-95 350.9 219 80.4
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 7.0e-95 350.9 219 79.5
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 9.2e-95 350.5 236 74.6
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.0e-94 349.4 221 78.7
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 2.0e-94 349.4 218 79.4
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 2.0e-94 349.4 219 79.5
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 3.5e-94 348.6 219 79.5
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 4.5e-94 348.2 219 79.5
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 1.3e-93 346.7 221 76.9
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 2.3e-93 345.9 221 76.9
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 2.3e-93 345.9 221 76.9
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 2.3e-93 345.9 218 79.4
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.3e-93 345.9 222 78.4
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.8e-93 345.1 218 77.5
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 5.0e-93 344.7 217 75.6
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 8.6e-93 344.0 218 78.0
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 8.6e-93 344.0 218 78.0
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.1e-92 343.6 218 76.6
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 2.5e-92 342.4 219 79.0
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 4.3e-92 341.7 220 77.3
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 4.3e-92 341.7 219 79.0
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 9.5e-92 340.5 219 76.3
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 2.8e-91 339.0 220 75.9
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 4.7e-91 338.2 218 76.6
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 1.0e-90 337.0 231 73.6
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.0e-90 335.5 192 86.5
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 1.2e-89 333.6 217 74.2
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.5e-89 333.2 219 78.1
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 7.5e-89 330.9 217 73.3
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 9.8e-89 330.5 217 73.3
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.3e-88 330.1 218 77.1
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 2.9e-88 328.9 218 74.8
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 3.7e-88 328.6 217 73.3
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 6.4e-88 327.8 209 79.4
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.1e-87 327.0 193 80.3
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 4.1e-87 325.1 218 72.0
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 1.2e-86 323.6 217 72.8
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 1.6e-86 323.2 228 71.9
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 1.6e-86 323.2 199 81.9
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 4.6e-86 321.6 217 71.9
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 4.6e-86 321.6 220 74.1
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 1.0e-85 320.5 220 73.6
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 3.0e-85 318.9 218 71.1
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 3.9e-85 318.5 196 79.6
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 5.0e-85 318.2 192 80.2
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 8.6e-85 317.4 214 75.7
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.1e-84 317.0 192 79.7
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.5e-84 315.8 193 80.3
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 4.3e-84 315.1 195 79.5
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 6.2e-83 311.2 220 72.7
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 6.2e-83 311.2 220 72.7
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 8.0e-83 310.8 196 77.0
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.4e-82 310.1 193 78.2
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 2.3e-82 309.3 209 71.3
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 4.0e-82 308.5 219 69.4
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 4.0e-82 308.5 219 69.4
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 6.8e-82 307.8 220 70.0
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 1.2e-81 307.0 220 69.5
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 2.0e-81 306.2 218 70.2
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 2.0e-81 306.2 192 76.0
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 2.6e-81 305.8 218 69.7
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 2.6e-81 305.8 218 69.7
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 9.8e-81 303.9 218 69.3
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 2.2e-80 302.8 192 75.5
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.1e-79 300.4 219 68.9
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 2.4e-79 299.3 218 69.3
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 3.2e-79 298.9 218 66.5
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 4.1e-79 298.5 218 67.0
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 5.4e-79 298.1 203 73.4
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 5.4e-79 298.1 299 55.9
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 1.3e-77 293.5 192 75.0
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 8.6e-77 290.8 191 72.8
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 9.5e-76 287.3 222 65.8
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 2.8e-75 285.8 184 78.8
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 2.8e-75 285.8 195 72.8
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 1.4e-74 283.5 206 68.4
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 4.0e-74 282.0 221 68.8
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 5.8e-73 278.1 287 54.7
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.3e-72 276.9 212 64.6
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.7e-72 276.6 218 61.0
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 5.4e-71 271.6 178 77.5
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 7.1e-71 271.2 212 64.2
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 3.0e-69 265.8 218 61.9
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.1e-66 257.3 168 78.0
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 2.3e-66 256.1 223 61.0
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 2.3e-66 256.1 223 61.0
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 3.1e-66 255.8 217 61.3
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 4.0e-66 255.4 171 74.3
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.5e-65 253.4 194 71.6
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 7.6e-65 251.1 218 61.0
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 1.3e-64 250.4 222 59.0
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 2.9e-64 249.2 157 76.4
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.4e-63 246.1 194 63.9
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 2.4e-63 246.1 162 77.2
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.5e-62 242.3 167 70.7
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 5.1e-61 238.4 221 53.4
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 4.0e-58 228.8 192 61.5
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 6.9e-58 228.0 219 53.0
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 1.3e-51 207.2 188 58.0
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 2.0e-49 199.9 160 61.9
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 6.7e-45 184.9 218 45.0
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 1.3e-43 180.6 93 88.2
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 2.1e-43 179.9 151 59.6
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 4.8e-35 152.1 234 42.3
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 1.8e-34 150.2 223 36.3
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 1.0e-32 144.4 228 38.2
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 1.3e-32 144.1 98 72.4
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.5e-31 138.7 84 81.0
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 7.9e-30 134.8 217 36.9
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 1.1e-28 131.0 84 71.4
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.1e-26 122.5 139 47.5
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 6.9e-26 121.7 92 67.4
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 2.2e-19 100.1 80 66.2
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 5.9e-09 65.5 141 37.6
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 5.0e-08 62.4 204 23.5


User provided reference genes

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