Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.2e-46 189.5 93 100.0
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 7.1e-28 127.1 78 75.6
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.2e-27 126.3 74 79.7
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 2.1e-27 125.6 76 72.4
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 2.1e-27 125.6 76 77.6
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 4.6e-27 124.4 76 76.3
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 1.0e-26 123.2 80 71.2
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 1.6e-19 99.4 75 65.3
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 4.6e-19 97.8 75 64.0
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 3.0e-18 95.1 76 65.8
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 3.0e-18 95.1 73 63.0
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.1e-17 93.2 74 62.2
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.1e-17 93.2 74 60.8
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 1.9e-17 92.4 74 60.8
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 3.3e-17 91.7 74 60.8
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 3.3e-17 91.7 74 63.5
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 3.3e-17 91.7 74 63.5
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 4.3e-17 91.3 74 56.8
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 5.6e-17 90.9 80 60.0
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 5.6e-17 90.9 78 61.5
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 5.6e-17 90.9 76 61.8
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 5.6e-17 90.9 76 63.2
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 5.6e-17 90.9 76 61.8
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 7.3e-17 90.5 76 65.8
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 7.3e-17 90.5 74 62.2
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 7.3e-17 90.5 76 63.2
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 9.6e-17 90.1 74 59.5
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.6e-16 89.4 76 63.2
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.6e-16 89.4 81 58.0
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 1.6e-16 89.4 76 61.8
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 2.1e-16 89.0 76 60.5
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 2.1e-16 89.0 76 64.5
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.1e-16 89.0 74 59.5
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 2.8e-16 88.6 76 60.5
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 2.8e-16 88.6 76 63.2
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.8e-16 88.6 76 63.2
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.8e-16 88.6 76 63.2
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 3.6e-16 88.2 76 60.5
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 3.6e-16 88.2 76 60.5
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.6e-16 88.2 76 61.8
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 3.6e-16 88.2 76 60.5
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 4.7e-16 87.8 76 63.2
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 4.7e-16 87.8 78 59.0
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 4.7e-16 87.8 76 61.8
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 6.2e-16 87.4 76 61.8
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 6.2e-16 87.4 76 63.2
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 6.2e-16 87.4 73 60.3
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 6.2e-16 87.4 76 61.8
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 6.2e-16 87.4 76 57.9
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 6.2e-16 87.4 76 60.5
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 8.1e-16 87.0 79 63.3
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.1e-15 86.7 76 60.5
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.1e-15 86.7 80 56.2
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 1.8e-15 85.9 72 61.1
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.8e-15 85.9 72 61.1
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 2.4e-15 85.5 74 58.1
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.1e-15 85.1 76 60.5
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 4.0e-15 84.7 75 54.7
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 4.0e-15 84.7 74 63.5
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 5.2e-15 84.3 76 59.2
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 5.2e-15 84.3 78 57.7
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 6.8e-15 84.0 74 56.8
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 6.8e-15 84.0 74 54.1
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 6.8e-15 84.0 74 54.1
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 6.8e-15 84.0 74 54.1
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 6.8e-15 84.0 76 59.2
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 8.9e-15 83.6 77 59.7
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 8.9e-15 83.6 75 61.3
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 8.9e-15 83.6 76 60.5
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.2e-14 83.2 78 55.1
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.2e-14 83.2 78 55.1
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 1.2e-14 83.2 78 59.0
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.5e-14 82.8 79 57.0
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 2.0e-14 82.4 75 56.0
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 2.6e-14 82.0 76 60.5
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.6e-14 82.0 76 57.9
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 3.4e-14 81.6 78 59.0
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 3.4e-14 81.6 78 57.7
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 3.4e-14 81.6 77 58.4
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 3.4e-14 81.6 74 55.4
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 4.4e-14 81.3 80 57.5
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 4.4e-14 81.3 75 57.3
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 4.4e-14 81.3 80 57.5
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 5.8e-14 80.9 76 57.9
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 5.8e-14 80.9 75 60.0
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 5.8e-14 80.9 75 57.3
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 7.6e-14 80.5 72 59.7
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 7.6e-14 80.5 76 59.2
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 1.3e-13 79.7 78 59.0
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.7e-13 79.3 74 59.5
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.7e-13 79.3 74 59.5
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 1.7e-13 79.3 80 60.0
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 1.7e-13 79.3 75 58.7
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.2e-13 79.0 76 57.9
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 2.9e-13 78.6 76 59.2
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 2.9e-13 78.6 76 57.9
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 2.9e-13 78.6 81 54.3
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 2.9e-13 78.6 76 53.9
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 2.9e-13 78.6 77 59.7
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 2.9e-13 78.6 76 57.9
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 3.8e-13 78.2 76 57.9
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 3.8e-13 78.2 74 55.4
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 3.8e-13 78.2 77 55.8
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 4.9e-13 77.8 74 59.5
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 4.9e-13 77.8 75 56.0
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 4.9e-13 77.8 78 56.4
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 4.9e-13 77.8 79 55.7
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 4.9e-13 77.8 61 57.4
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 6.4e-13 77.4 76 57.9
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 6.4e-13 77.4 76 55.3
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 1.4e-12 76.3 76 56.6
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 1.4e-12 76.3 76 52.6
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.4e-12 76.3 75 56.0
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.4e-12 76.3 76 59.2
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 1.4e-12 76.3 76 59.2
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 1.9e-12 75.9 76 56.6
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 2.4e-12 75.5 75 54.7
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 2.4e-12 75.5 79 55.7
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 3.2e-12 75.1 74 56.8
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 3.2e-12 75.1 74 56.8
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 3.2e-12 75.1 76 56.6
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 4.2e-12 74.7 74 55.4
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 5.4e-12 74.3 76 52.6
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 7.1e-12 73.9 69 59.4
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 7.1e-12 73.9 79 53.2
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 9.3e-12 73.6 76 57.9
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 4.6e-11 71.2 50 64.0
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 4.6e-11 71.2 77 50.6
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 6.0e-11 70.9 81 54.3
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.7e-10 69.3 101 43.6
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 3.9e-10 68.2 74 51.4
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 8.7e-10 67.0 76 52.6
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 1.1e-09 66.6 74 50.0
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 5.6e-09 64.3 76 48.7
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 5.6e-09 64.3 59 50.8
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 7.3e-09 63.9 51 60.8
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 2.1e-08 62.4 76 47.4
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 2.1e-08 62.4 43 60.5
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 1.4e-07 59.7 50 54.0
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 2.4e-07 58.9 52 55.8
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 3.1e-07 58.5 34 70.6


User provided reference genes

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