Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 2.5e-284 981.5 505 100.0
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 4.8e-195 684.9 494 70.4
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 6.4e-192 674.5 493 70.4
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 2.1e-190 669.5 503 67.6
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 9.0e-186 654.1 497 66.6
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 1.3e-184 650.2 498 65.9
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.3e-184 650.2 490 66.7
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 5.5e-183 644.8 493 66.3
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 1.2e-182 643.7 496 66.9
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 4.6e-182 641.7 500 64.8
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 6.0e-182 641.3 490 65.9
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 1.0e-181 640.6 490 67.3
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 2.3e-181 639.4 507 64.7
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 5.1e-181 638.3 489 66.7
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 5.7e-180 634.8 508 66.1
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 8.2e-179 630.9 516 64.0
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 8.2e-179 630.9 491 66.6
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 1.1e-178 630.6 492 65.4
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 1.2e-177 627.1 494 66.0
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 1.5e-177 626.7 492 65.0
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.0e-177 626.3 496 63.9
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 2.9e-176 622.5 482 66.2
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.5e-175 619.4 495 64.2
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 9.3e-175 617.5 490 64.3
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.1e-174 616.3 450 68.9
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 2.7e-174 615.9 489 63.6
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 2.7e-174 615.9 489 62.8
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 6.1e-174 614.8 489 63.0
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 7.9e-174 614.4 497 62.8
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 7.9e-174 614.4 484 64.0
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 1.3e-173 613.6 495 63.8
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 2.3e-173 612.8 502 62.2
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 3.0e-173 612.5 495 63.8
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.9e-173 612.1 489 65.4
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 5.1e-173 611.7 490 64.1
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 1.1e-172 610.5 512 62.3
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 2.5e-172 609.4 496 63.1
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 3.3e-172 609.0 507 63.9
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 4.3e-172 608.6 490 63.9
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 5.7e-172 608.2 511 62.0
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 3.7e-171 605.5 493 64.3
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 6.3e-171 604.7 501 63.9
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 6.3e-171 604.7 505 62.8
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 8.2e-171 604.4 490 62.9
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 3.1e-170 602.4 490 64.7
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 4.1e-170 602.1 499 61.9
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 9.0e-170 600.9 497 63.8
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 9.0e-170 600.9 492 62.8
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 1.2e-169 600.5 502 61.0
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 1.5e-169 600.1 504 61.7
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 2.6e-169 599.4 493 62.9
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 4.5e-169 598.6 485 61.4
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 4.5e-169 598.6 490 64.3
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 5.9e-169 598.2 489 61.3
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 5.9e-169 598.2 503 62.0
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 1.0e-168 597.4 490 62.7
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 1.3e-168 597.0 490 62.2
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 1.3e-168 597.0 485 61.4
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 6.5e-168 594.7 490 62.2
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 1.1e-167 594.0 492 62.4
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 1.9e-167 593.2 492 61.8
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 1.9e-167 593.2 502 62.9
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 5.5e-167 591.7 491 62.5
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 1.6e-166 590.1 503 61.0
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 1.6e-166 590.1 503 61.0
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 1.6e-166 590.1 491 62.1
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 6.1e-166 588.2 508 62.6
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 6.1e-166 588.2 491 60.9
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 1.4e-165 587.0 490 63.9
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 3.0e-165 585.9 493 62.1
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 2.0e-164 583.2 496 60.3
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 2.2e-163 579.7 492 61.2
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 2.8e-163 579.3 492 60.4
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 8.2e-163 577.8 492 60.8
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.4e-162 577.0 491 61.3
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 2.4e-162 576.2 493 60.9
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 6.9e-162 574.7 497 60.4
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 2.6e-161 572.8 484 61.0
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.5e-159 566.2 497 59.6
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.0e-157 560.8 495 59.0
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 1.4e-157 560.5 482 61.4
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 7.4e-156 554.7 491 60.1
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.7e-155 552.4 431 66.4
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 1.4e-154 550.4 520 57.1
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 2.4e-154 549.7 491 57.0
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 5.0e-152 542.0 503 58.4
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.7e-142 509.6 396 66.2
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 3.0e-141 506.1 528 53.4
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 8.8e-141 504.6 500 54.0
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 9.8e-140 501.1 501 53.1
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 9.1e-138 494.6 505 52.1
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 5.5e-135 485.3 371 66.6
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 2.6e-132 476.5 525 49.1
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 4.6e-121 439.1 381 61.4
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 2.5e-119 433.3 467 52.9
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.4e-114 417.5 349 61.6
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 2.7e-113 413.3 494 50.0
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 6.8e-109 398.7 487 46.0
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 9.8e-108 394.8 533 43.0
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 9.8e-108 394.8 431 51.5
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 6.6e-96 355.5 511 41.5
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 1.8e-93 347.4 285 58.2
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 3.2e-90 336.7 343 55.1
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 6.2e-86 322.4 286 60.1
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 6.7e-80 302.4 495 38.8
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 7.4e-79 298.9 431 41.1
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 2.3e-72 277.3 477 37.1
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.1e-66 258.5 257 59.1
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.5e-63 248.1 284 48.9
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.8e-61 241.1 207 66.7
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 3.1e-61 240.4 179 68.7
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 1.2e-57 228.4 373 41.3
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 9.7e-55 218.8 149 70.5
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.3e-54 218.4 229 55.5
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 1.4e-53 214.9 199 59.3
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 8.5e-51 205.7 175 61.7
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.6e-44 184.1 156 60.9
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 1.9e-42 177.9 131 71.0
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 7.9e-41 172.6 434 30.0
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 6.7e-40 169.5 131 67.9
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 2.0e-36 157.9 266 41.0
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 6.5e-35 152.9 112 61.6
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 7.2e-34 149.4 130 60.8
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 5.0e-19 100.1 496 25.6
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 3.5e-12 77.4 92 48.9
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 6.6e-11 73.2 65 60.0
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 5.6e-10 70.1 65 58.5
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.6e-09 68.6 52 65.4


User provided reference genes

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