Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 8.1e-103 377.1 193 100.0
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 1.8e-54 216.5 178 61.8
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 4.1e-54 215.3 176 61.9
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 5.9e-53 211.5 177 61.0
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 2.9e-52 209.1 177 58.8
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 8.5e-52 207.6 177 58.8
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 1.5e-51 206.8 178 61.8
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 1.0e-49 200.7 177 61.0
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 4.0e-49 198.7 183 59.6
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 1.2e-48 197.2 177 57.6
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 2.0e-48 196.4 177 57.6
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 3.4e-48 195.7 177 56.5
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 5.7e-48 194.9 172 58.7
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 7.5e-48 194.5 177 58.8
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 7.5e-48 194.5 176 56.2
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 2.8e-47 192.6 178 58.4
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 4.8e-47 191.8 187 55.6
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 6.3e-47 191.4 192 56.2
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 8.3e-47 191.0 191 53.4
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 8.3e-47 191.0 178 57.3
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 8.3e-47 191.0 178 57.3
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.8e-46 189.9 178 56.7
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 2.4e-46 189.5 178 57.3
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.4e-46 189.5 178 57.3
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 2.4e-46 189.5 177 55.9
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 3.1e-46 189.1 177 55.4
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 9.1e-46 187.6 181 58.0
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 1.6e-45 186.8 173 58.4
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 2.0e-45 186.4 179 57.0
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 2.7e-45 186.0 172 57.6
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 4.5e-45 185.3 178 52.8
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 1.0e-44 184.1 177 54.2
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 1.0e-44 184.1 178 52.2
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 1.3e-44 183.7 179 55.9
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.3e-44 183.7 176 54.5
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 1.7e-44 183.3 178 52.2
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 2.2e-44 183.0 176 56.2
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 3.8e-44 182.2 177 52.0
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 3.8e-44 182.2 178 55.6
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 5.0e-44 181.8 174 56.3
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 8.5e-44 181.0 176 52.3
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 2.5e-43 179.5 178 55.1
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 2.5e-43 179.5 178 54.5
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 3.2e-43 179.1 178 54.5
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 4.2e-43 178.7 176 53.4
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 1.2e-42 177.2 175 54.3
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 1.2e-42 177.2 176 52.8
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 2.7e-42 176.0 180 53.3
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 3.6e-42 175.6 176 55.1
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 8.0e-42 174.5 177 54.8
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 8.0e-42 174.5 184 53.8
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 8.0e-42 174.5 174 56.3
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 1.0e-41 174.1 177 52.0
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 1.4e-41 173.7 177 52.5
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 5.2e-41 171.8 178 51.1
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 2.0e-40 169.9 177 52.5
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 5.7e-40 168.3 169 52.1
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 9.8e-40 167.5 177 52.5
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 1.7e-39 166.8 179 51.4
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 3.7e-39 165.6 178 53.4
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 3.7e-39 165.6 176 50.6
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 3.7e-39 165.6 178 52.2
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 4.9e-39 165.2 178 52.8
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 8.3e-39 164.5 179 50.8
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 1.4e-38 163.7 177 50.3
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 1.8e-38 163.3 176 50.6
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 2.4e-38 162.9 177 51.4
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 7.0e-38 161.4 180 51.1
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 4.5e-37 158.7 176 49.4
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 7.7e-37 157.9 172 52.3
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 7.7e-37 157.9 172 51.2
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.3e-36 157.1 173 48.6
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 1.7e-36 156.8 189 50.3
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 1.7e-36 156.8 177 50.8
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 3.8e-36 155.6 178 51.1
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 8.6e-36 154.5 172 50.6
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 1.1e-35 154.1 175 49.1
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 1.5e-35 153.7 172 52.9
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 1.5e-35 153.7 173 48.0
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 1.5e-35 153.7 174 49.4
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.9e-35 153.3 176 48.9
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 1.9e-35 153.3 176 48.9
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 1.9e-35 153.3 172 52.9
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 2.5e-35 152.9 172 50.6
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 5.5e-35 151.8 178 48.9
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 7.2e-35 151.4 187 48.7
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 9.5e-35 151.0 172 50.6
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 9.5e-35 151.0 172 51.7
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 1.6e-34 150.2 172 52.3
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 1.6e-34 150.2 179 48.6
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 2.1e-34 149.8 175 48.6
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 3.6e-34 149.1 177 49.2
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 4.7e-34 148.7 190 46.3
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 8.0e-34 147.9 177 48.0
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 2.3e-33 146.4 166 49.4
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 2.3e-33 146.4 172 45.9
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 4.0e-33 145.6 172 50.0
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 5.2e-33 145.2 175 47.4
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 5.2e-33 145.2 175 45.1
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 6.8e-33 144.8 173 47.4
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 8.9e-33 144.4 178 47.8
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 1.5e-32 143.7 187 47.1
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 2.0e-32 143.3 153 49.0
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 9.8e-32 141.0 178 46.6
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 2.8e-31 139.4 112 58.0
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 8.3e-31 137.9 177 45.2
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 8.3e-31 137.9 177 45.8
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 1.4e-30 137.1 177 45.2
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 1.4e-30 137.1 177 45.2
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 1.4e-30 137.1 177 44.6
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 3.2e-30 136.0 177 45.2
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 3.5e-29 132.5 178 47.2
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 5.9e-29 131.7 177 47.5
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 1.0e-28 131.0 177 44.6
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 1.0e-28 131.0 172 44.2
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 2.3e-28 129.8 179 43.0
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 3.9e-28 129.0 190 42.6
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 1.1e-27 127.5 183 43.7
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 1.5e-27 127.1 183 41.5
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 1.5e-27 127.1 183 41.5
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 9.5e-27 124.4 183 45.4
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 9.5e-27 124.4 178 43.3
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 9.5e-27 124.4 178 43.3
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 2.8e-26 122.9 177 42.9
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 4.7e-26 122.1 111 57.7
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 1.8e-25 120.2 177 43.5
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 6.8e-25 118.2 181 43.1
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 1.3e-23 114.0 115 53.0
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 1.1e-19 100.9 181 39.8
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 2.5e-11 73.2 191 30.9
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 9.5e-11 71.2 115 37.4
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 9.5e-11 71.2 181 34.3
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 1.5e-08 63.9 180 32.8


User provided reference genes

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