Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 1.6e-77 292.7 156 100.0
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 1.8e-76 289.3 156 94.9
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 9.9e-51 203.8 132 78.8
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 4.9e-50 201.4 131 76.3
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 8.4e-50 200.7 127 78.7
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 1.9e-49 199.5 123 80.5
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 2.4e-49 199.1 129 77.5
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 2.4e-49 199.1 128 78.9
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 7.1e-49 197.6 129 75.2
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 1.2e-48 196.8 125 79.2
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 1.2e-48 196.8 127 75.6
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 2.7e-48 195.7 125 78.4
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 2.7e-48 195.7 157 66.2
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 3.5e-48 195.3 130 76.9
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 3.5e-48 195.3 125 75.2
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 6.0e-48 194.5 128 79.7
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 6.0e-48 194.5 128 75.0
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 7.9e-48 194.1 124 75.8
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 7.9e-48 194.1 127 75.6
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 7.9e-48 194.1 128 76.6
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 7.9e-48 194.1 132 78.8
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 1.3e-47 193.4 127 77.2
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 1.8e-47 193.0 125 78.4
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 1.8e-47 193.0 133 69.9
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 1.8e-47 193.0 128 75.0
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 2.3e-47 192.6 126 80.2
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 2.3e-47 192.6 136 72.1
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 2.3e-47 192.6 127 75.6
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 3.9e-47 191.8 129 75.2
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 3.9e-47 191.8 125 75.2
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 3.9e-47 191.8 124 75.8
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 5.1e-47 191.4 130 73.1
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 6.7e-47 191.0 128 77.3
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 8.7e-47 190.7 128 75.0
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 8.7e-47 190.7 157 63.7
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 1.1e-46 190.3 126 75.4
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 1.5e-46 189.9 152 65.1
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 1.5e-46 189.9 151 65.6
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 2.5e-46 189.1 125 76.0
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 2.5e-46 189.1 127 74.0
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 2.5e-46 189.1 127 74.0
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 2.5e-46 189.1 155 66.5
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 2.5e-46 189.1 125 75.2
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 3.3e-46 188.7 150 68.7
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 3.3e-46 188.7 132 74.2
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 3.3e-46 188.7 127 74.0
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 3.3e-46 188.7 159 63.5
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 4.3e-46 188.3 127 74.0
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 7.4e-46 187.6 127 75.6
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 7.4e-46 187.6 155 65.2
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 7.4e-46 187.6 126 74.6
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 9.6e-46 187.2 143 68.5
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 9.6e-46 187.2 125 74.4
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 1.3e-45 186.8 128 70.3
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 1.3e-45 186.8 127 73.2
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 1.3e-45 186.8 132 72.0
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 2.1e-45 186.0 155 64.5
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 2.8e-45 185.7 152 65.8
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 2.8e-45 185.7 128 75.8
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 3.7e-45 185.3 128 72.7
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 4.8e-45 184.9 127 75.6
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 6.2e-45 184.5 128 71.9
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 1.4e-44 183.3 132 70.5
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 1.8e-44 183.0 123 74.0
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 1.8e-44 183.0 127 74.0
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 2.4e-44 182.6 127 74.8
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 2.4e-44 182.6 122 75.4
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 3.1e-44 182.2 126 74.6
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 3.1e-44 182.2 126 69.0
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 3.1e-44 182.2 129 71.3
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 3.1e-44 182.2 123 74.8
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 4.0e-44 181.8 126 74.6
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 4.0e-44 181.8 129 67.4
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 1.2e-43 180.3 134 73.1
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 1.5e-43 179.9 155 62.6
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 2.6e-43 179.1 125 72.0
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 7.6e-43 177.6 127 76.4
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 1.3e-42 176.8 127 70.1
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 1.7e-42 176.4 157 63.7
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 2.9e-42 175.6 128 73.4
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 2.9e-42 175.6 129 74.4
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 3.8e-42 175.3 131 71.0
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 3.8e-42 175.3 123 66.7
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 3.8e-42 175.3 124 74.2
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 4.9e-42 174.9 125 72.8
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 8.4e-42 174.1 139 65.5
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 1.1e-41 173.7 128 72.7
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 3.2e-41 172.2 151 65.6
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 1.2e-40 170.2 121 71.1
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 1.6e-40 169.9 121 67.8
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 1.6e-40 169.9 130 69.2
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 4.6e-40 168.3 126 69.0
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 1.0e-39 167.2 116 70.7
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 1.8e-39 166.4 120 65.8
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 3.0e-39 165.6 134 65.7
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 5.1e-39 164.9 119 71.4
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 6.7e-39 164.5 120 65.0
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 1.5e-38 163.3 129 69.0
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 9.7e-38 160.6 123 73.2
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.3e-37 160.2 128 64.1
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 2.8e-37 159.1 125 63.2
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 5.3e-36 154.8 151 58.3
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 2.6e-35 152.5 134 58.2
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 4.5e-35 151.8 127 57.5
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 1.1e-33 147.1 131 59.5
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 2.3e-31 139.4 125 56.8
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 7.4e-30 134.4 151 51.7
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 9.7e-30 134.0 151 51.7
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 2.2e-29 132.9 91 72.5
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 6.9e-28 127.9 123 51.2
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 1.4e-25 120.2 116 55.2
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 3.6e-24 115.5 125 48.8
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 5.1e-23 111.7 82 69.5
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 5.1e-23 111.7 120 49.2
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 5.1e-23 111.7 117 51.3
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 4.1e-20 102.1 126 46.8
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 9.1e-20 100.9 87 57.5
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 2.6e-19 99.4 111 46.8
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 8.5e-18 94.4 91 58.2
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 1.4e-17 93.6 81 54.3
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 8.0e-16 87.8 124 43.5
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 4.8e-13 78.6 118 40.7
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 8.5e-10 67.8 59 61.0
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.2e-08 63.9 90 44.4


User provided reference genes

Program Settings