Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 5.3e-125 451.1 233 100.0
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 3.3e-74 282.3 235 62.6
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 3.6e-73 278.9 233 61.4
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 4.0e-72 275.4 230 63.0
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 5.2e-72 275.0 234 65.4
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 3.4e-71 272.3 234 61.5
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 7.6e-71 271.2 237 61.6
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 1.7e-70 270.0 234 60.3
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 2.9e-70 269.2 230 61.7
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 4.9e-70 268.5 230 62.6
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 1.4e-69 266.9 230 58.7
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 7.1e-69 264.6 236 60.6
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 7.1e-69 264.6 234 61.5
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 2.1e-68 263.1 234 61.1
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 2.1e-68 263.1 230 59.6
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 3.5e-68 262.3 230 60.4
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.0e-67 260.8 234 59.8
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.7e-67 260.0 231 58.9
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 2.3e-67 259.6 231 59.7
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 3.9e-67 258.8 232 58.6
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 3.9e-67 258.8 237 58.6
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 8.7e-67 257.7 230 57.8
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 1.9e-66 256.5 230 58.7
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.3e-66 255.8 230 58.7
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.3e-66 255.8 230 58.7
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 7.3e-66 254.6 234 57.3
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.3e-66 254.6 230 58.3
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 2.1e-65 253.1 209 63.6
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 2.8e-65 252.7 229 57.6
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.8e-65 252.7 232 57.8
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 3.6e-65 252.3 231 58.4
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 3.6e-65 252.3 217 59.4
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 6.2e-65 251.5 226 57.1
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 8.1e-65 251.1 230 57.4
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 8.1e-65 251.1 231 59.3
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 8.1e-65 251.1 230 57.8
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 8.1e-65 251.1 208 61.1
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 1.4e-64 250.4 193 67.4
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 2.4e-64 249.6 232 55.6
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 3.1e-64 249.2 236 58.5
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 3.1e-64 249.2 234 58.5
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 4.0e-64 248.8 230 59.1
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.2e-63 247.3 232 59.1
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 2.6e-63 246.1 234 56.8
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 5.8e-63 245.0 231 56.3
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 7.6e-63 244.6 231 58.0
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 7.6e-63 244.6 236 57.6
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 7.6e-63 244.6 231 56.7
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 9.9e-63 244.2 235 55.7
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 9.9e-63 244.2 227 58.6
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 1.3e-62 243.8 227 59.9
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.7e-62 243.4 232 56.0
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 3.8e-62 242.3 185 64.3
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 4.9e-62 241.9 192 65.6
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 8.4e-62 241.1 235 57.0
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 1.1e-61 240.7 232 56.0
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 1.9e-61 240.0 231 56.3
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 5.4e-61 238.4 227 57.3
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.1e-61 238.0 230 56.5
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 9.3e-61 237.7 195 62.6
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 1.2e-60 237.3 209 59.3
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 1.6e-60 236.9 195 62.1
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 1.6e-60 236.9 227 55.9
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 2.1e-60 236.5 195 61.0
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 2.7e-60 236.1 233 54.1
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 3.5e-60 235.7 227 54.6
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 3.5e-60 235.7 231 53.7
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 6.0e-60 235.0 195 60.5
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 7.9e-60 234.6 226 55.8
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 3.0e-59 232.6 195 59.5
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 6.7e-59 231.5 234 54.7
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 8.7e-59 231.1 235 56.6
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 8.7e-59 231.1 197 60.4
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 1.1e-58 230.7 190 60.0
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 1.9e-58 229.9 190 60.0
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 1.9e-58 229.9 190 60.0
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.9e-58 229.9 230 51.7
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 3.3e-58 229.2 233 52.4
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 4.3e-58 228.8 188 60.1
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 4.3e-58 228.8 231 55.4
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 7.4e-58 228.0 227 55.9
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 2.1e-57 226.5 188 59.6
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 2.8e-57 226.1 227 54.6
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 3.7e-57 225.7 231 54.1
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 6.2e-57 224.9 205 57.6
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 6.2e-57 224.9 183 63.9
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 4.0e-56 222.2 239 54.4
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 4.0e-56 222.2 233 52.4
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 1.2e-55 220.7 198 60.1
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 3.4e-55 219.2 186 58.6
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 3.4e-55 219.2 199 60.3
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 4.5e-55 218.8 253 52.2
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 9.9e-55 217.6 233 54.5
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 2.2e-54 216.5 245 49.4
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 4.9e-54 215.3 229 52.4
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 4.9e-54 215.3 228 51.3
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 8.4e-54 214.5 210 53.8
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 1.1e-53 214.2 202 57.4
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 1.1e-53 214.2 228 50.9
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 1.9e-53 213.4 183 57.4
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 3.2e-53 212.6 229 51.5
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 5.5e-53 211.8 228 50.4
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.2e-52 210.7 244 48.8
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 4.6e-52 208.8 244 48.4
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.6e-52 208.8 244 48.4
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 6.0e-52 208.4 221 50.7
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 7.9e-52 208.0 249 48.6
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 7.9e-52 208.0 234 51.3
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 3.9e-51 205.7 202 55.0
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 5.1e-51 205.3 258 46.9
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 8.7e-51 204.5 153 68.0
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 4.3e-50 202.2 202 53.5
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 5.6e-50 201.8 188 55.3
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 4.8e-49 198.7 184 52.7
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 6.2e-49 198.4 262 45.4
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 7.6e-47 191.4 184 50.5
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.9e-45 186.8 143 63.6
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 7.1e-45 184.9 169 55.6
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 7.9e-44 181.4 216 48.1
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 5.1e-43 178.7 160 58.1
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.5e-42 177.2 235 44.7
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.6e-41 173.7 234 42.3
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 6.3e-41 171.8 150 62.0
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 2.4e-40 169.9 124 70.2
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 4.5e-39 165.6 232 44.8
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 3.8e-38 162.5 207 45.9
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.6e-36 157.1 155 52.9
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 1.9e-34 150.2 229 39.3
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 3.3e-34 149.4 250 38.0
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 2.4e-32 143.3 214 40.2
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 3.4e-31 139.4 132 55.3
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.9e-30 136.3 184 42.4
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 8.5e-30 134.8 195 40.5
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 3.9e-27 125.9 201 37.3
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.1e-18 97.8 95 50.5
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 4.4e-18 95.9 88 52.3
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 9.7e-18 94.7 77 64.9
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 2.2e-17 93.6 144 40.3
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 2.2e-17 93.6 117 43.6
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 2.7e-12 76.6 177 28.2
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 4.7e-12 75.9 146 32.9
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 8.0e-12 75.1 75 50.7
Hma1.2p1_0312F.1_g121470 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.4e-08 64.3 78 44.9
MCO12G415 Micromonas commoda HOM05D004951 ORTHO05D005840 1.4e-08 64.3 171 26.3
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 4.1e-08 62.8 78 44.9


User provided reference genes

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