Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 2.4e-66 255.4 129 100.0
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 5.5e-55 217.6 129 81.4
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 1.6e-54 216.1 129 81.4
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 3.6e-54 214.9 129 81.4
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 7.9e-54 213.8 129 80.6
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 7.9e-54 213.8 146 75.3
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 1.0e-53 213.4 129 79.1
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 1.0e-53 213.4 129 80.6
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 1.0e-53 213.4 129 79.1
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 1.4e-53 213.0 129 79.1
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 1.8e-53 212.6 129 79.1
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 1.8e-53 212.6 129 79.1
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 3.0e-53 211.8 129 79.1
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 3.9e-53 211.5 129 79.1
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 3.9e-53 211.5 129 79.1
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 3.9e-53 211.5 129 79.1
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 3.9e-53 211.5 129 80.6
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 3.9e-53 211.5 129 79.1
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 3.9e-53 211.5 127 79.5
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 5.2e-53 211.1 129 78.3
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 5.2e-53 211.1 129 78.3
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 6.7e-53 210.7 129 79.1
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 6.7e-53 210.7 129 78.3
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 8.8e-53 210.3 128 79.7
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 1.5e-52 209.5 129 77.5
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.5e-52 209.5 129 79.1
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 2.0e-52 209.1 129 76.7
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 2.0e-52 209.1 127 78.7
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 2.6e-52 208.8 124 79.8
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 3.3e-52 208.4 127 78.0
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 3.3e-52 208.4 129 76.7
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 4.4e-52 208.0 127 77.2
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 5.7e-52 207.6 119 84.0
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 7.4e-52 207.2 129 79.1
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.3e-51 206.5 129 76.0
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 1.3e-51 206.5 129 79.1
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.3e-51 206.5 129 77.5
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 2.2e-51 205.7 129 78.3
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 2.2e-51 205.7 129 77.5
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 2.2e-51 205.7 129 77.5
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 2.8e-51 205.3 129 78.3
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 2.8e-51 205.3 129 78.3
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 2.8e-51 205.3 129 77.5
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 3.7e-51 204.9 123 80.5
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 76.0
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 3.7e-51 204.9 128 76.6
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 3.7e-51 204.9 127 77.2
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 77.5
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 3.7e-51 204.9 128 76.6
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 76.7
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 4.8e-51 204.5 127 78.0
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 6.3e-51 204.1 127 78.0
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 6.3e-51 204.1 129 76.7
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 6.3e-51 204.1 129 78.3
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 8.2e-51 203.8 129 78.3
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 8.2e-51 203.8 119 82.4
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 1.1e-50 203.4 127 78.0
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.1e-50 203.4 129 76.0
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 1.4e-50 203.0 129 76.7
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 1.4e-50 203.0 128 75.0
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 3.1e-50 201.8 127 74.8
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 4.1e-50 201.4 127 75.6
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 5.3e-50 201.1 129 77.5
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 9.1e-50 200.3 119 81.5
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 1.2e-49 199.9 129 75.2
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 1.2e-49 199.9 129 74.4
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 2.0e-49 199.1 127 77.2
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 2.0e-49 199.1 129 73.6
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 2.6e-49 198.7 129 74.4
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 4.5e-49 198.0 127 75.6
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 1.0e-48 196.8 127 75.6
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 1.0e-48 196.8 129 72.9
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 1.0e-48 196.8 120 80.0
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 1.3e-48 196.4 129 76.0
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 1.7e-48 196.1 129 75.2
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.7e-48 196.1 119 78.2
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.7e-48 196.1 129 72.9
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 2.2e-48 195.7 129 72.9
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 2.2e-48 195.7 130 73.8
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 2.9e-48 195.3 119 79.0
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 2.9e-48 195.3 121 76.9
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 2.9e-48 195.3 121 76.9
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 2.9e-48 195.3 119 77.3
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.0e-48 194.5 119 78.2
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.0e-48 194.5 121 76.9
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 5.0e-48 194.5 119 79.0
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 5.0e-48 194.5 129 72.9
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 6.5e-48 194.1 129 72.9
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 1.1e-47 193.4 129 72.9
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.1e-47 193.4 119 78.2
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 1.5e-47 193.0 129 73.6
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 2.5e-47 192.2 119 77.3
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 2.5e-47 192.2 119 76.5
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 2.5e-47 192.2 119 78.2
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 5.5e-47 191.0 119 76.5
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 2.1e-46 189.1 119 73.9
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 2.7e-46 188.7 119 75.6
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 4.7e-46 188.0 119 76.5
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 6.1e-46 187.6 119 73.9
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 1.0e-45 186.8 122 72.1
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 1.4e-45 186.4 119 73.9
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 1.4e-45 186.4 119 76.5
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 3.0e-45 185.3 119 74.8
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 5.2e-45 184.5 117 74.4
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 8.8e-45 183.7 119 73.9
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 2.0e-44 182.6 119 73.1
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 2.0e-44 182.6 128 71.9
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 7.5e-44 180.6 127 70.9
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 1.3e-43 179.9 119 72.3
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.7e-43 179.5 107 82.2
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 6.3e-43 177.6 122 71.3
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 9.1e-42 173.7 119 71.4
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 4.5e-41 171.4 122 68.9
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.3e-40 169.9 130 66.9
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 5.0e-40 167.9 107 72.9
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.1e-39 166.8 129 67.4
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 1.1e-39 166.8 105 74.3
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 1.5e-39 166.4 119 68.1
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.5e-39 165.6 121 68.6
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 4.2e-39 164.9 133 65.4
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 7.5e-36 154.1 96 75.0
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 1.7e-35 152.9 100 72.0
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 6.3e-35 151.0 95 73.7
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.1e-34 150.2 96 72.9
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 2.4e-34 149.1 97 73.2
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 2.9e-32 142.1 128 55.5
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.6e-30 136.3 100 65.0
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 4.7e-30 134.8 98 71.4
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 1.4e-29 133.3 143 50.3
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 4.0e-29 131.7 111 54.1
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 8.8e-29 130.6 141 50.4
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 4.9e-27 124.8 113 53.1
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.1e-26 123.6 92 70.7
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 3.1e-26 122.1 99 55.6
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 5.2e-13 78.2 51 74.5
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.7e-09 65.9 39 71.8
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.3e-07 58.9 39 69.2
CBR_g48744 Chara braunii HOM05D005344 ORTHO05D006444 3.6e-06 55.5 66 37.9
Nn5g29273 Nelumbo nucifera HOM05D005344 ORTHO05D006444 6.2e-06 54.7 32 71.9


User provided reference genes

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