Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 2.8e-102 375.2 175 100.0
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 8.7e-96 353.6 174 90.8
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 1.1e-95 353.2 175 92.0
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 91.4
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 1.9e-95 352.4 174 92.5
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 1.9e-95 352.4 175 92.0
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 2.5e-95 352.1 175 92.0
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 3.3e-95 351.7 175 90.9
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 3.3e-95 351.7 175 91.4
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 4.3e-95 351.3 175 91.4
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 4.3e-95 351.3 175 91.4
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 4.3e-95 351.3 175 91.4
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 4.3e-95 351.3 175 91.4
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 4.3e-95 351.3 175 91.4
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 5.7e-95 350.9 175 91.4
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 5.7e-95 350.9 175 90.9
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 5.7e-95 350.9 175 91.4
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 5.7e-95 350.9 174 91.4
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 7.4e-95 350.5 175 90.3
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 9.6e-95 350.1 175 90.9
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 9.6e-95 350.1 175 90.3
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 1.3e-94 349.7 175 89.7
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 1.3e-94 349.7 173 92.5
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 1.3e-94 349.7 175 91.4
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 2.1e-94 349.0 175 89.7
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 2.1e-94 349.0 172 91.9
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 2.1e-94 349.0 175 90.9
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 2.1e-94 349.0 175 90.3
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 2.8e-94 348.6 175 90.9
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 2.8e-94 348.6 175 90.3
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 3.7e-94 348.2 175 89.1
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 3.7e-94 348.2 175 90.3
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 3.7e-94 348.2 175 90.9
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 3.7e-94 348.2 175 90.9
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 4.8e-94 347.8 175 90.3
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 4.8e-94 347.8 175 89.7
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 4.8e-94 347.8 175 89.1
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 6.2e-94 347.4 175 90.3
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 6.2e-94 347.4 175 90.3
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 6.2e-94 347.4 175 90.3
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 6.2e-94 347.4 175 91.4
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 8.2e-94 347.1 175 89.7
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 1.1e-93 346.7 175 89.1
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 1.1e-93 346.7 175 89.7
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 1.1e-93 346.7 175 89.7
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 1.1e-93 346.7 175 89.7
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 1.4e-93 346.3 175 89.7
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 1.4e-93 346.3 175 88.6
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 1.4e-93 346.3 175 89.7
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 1.4e-93 346.3 173 90.2
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 1.8e-93 345.9 175 89.1
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 1.8e-93 345.9 175 89.7
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 1.8e-93 345.9 175 89.7
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.8e-93 345.9 175 89.7
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 1.8e-93 345.9 175 89.1
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 2.4e-93 345.5 175 88.6
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 2.4e-93 345.5 175 88.6
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 2.4e-93 345.5 175 89.1
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 2.4e-93 345.5 175 89.7
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 2.4e-93 345.5 172 91.3
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 2.4e-93 345.5 175 91.4
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.4e-93 345.5 175 89.1
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.4e-93 345.5 175 89.1
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 2.4e-93 345.5 175 89.1
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 3.1e-93 345.1 175 89.1
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 3.1e-93 345.1 175 89.1
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 3.1e-93 345.1 175 89.1
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 3.1e-93 345.1 175 89.1
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 3.1e-93 345.1 175 89.1
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 3.1e-93 345.1 175 89.1
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 3.1e-93 345.1 175 89.1
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 3.1e-93 345.1 175 89.1
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 4.0e-93 344.7 175 88.6
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 4.0e-93 344.7 175 89.1
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 4.0e-93 344.7 175 89.1
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 5.3e-93 344.4 175 88.6
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 5.3e-93 344.4 175 88.6
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 5.3e-93 344.4 175 90.3
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 5.3e-93 344.4 175 88.6
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 6.9e-93 344.0 174 89.7
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 6.9e-93 344.0 174 89.7
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 6.9e-93 344.0 172 90.7
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 6.9e-93 344.0 175 88.6
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 9.0e-93 343.6 175 88.6
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 9.0e-93 343.6 174 89.7
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 9.0e-93 343.6 174 87.9
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 1.2e-92 343.2 175 88.6
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 1.2e-92 343.2 175 89.1
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 1.5e-92 342.8 175 88.6
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 1.5e-92 342.8 173 89.6
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 2.0e-92 342.4 175 88.6
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 2.6e-92 342.0 175 89.1
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 3.4e-92 341.7 175 88.0
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 3.4e-92 341.7 169 90.5
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 5.8e-92 340.9 175 88.0
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 5.8e-92 340.9 174 87.4
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 1.0e-91 340.1 175 88.0
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 1.0e-91 340.1 175 88.0
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 1.3e-91 339.7 175 86.9
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 1.3e-91 339.7 175 87.4
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 1.7e-91 339.3 175 87.4
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 2.9e-91 338.6 175 88.0
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 1.1e-90 336.7 174 87.4
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 1.4e-90 336.3 173 90.2
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 9.3e-90 333.6 175 85.7
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 3.5e-89 331.6 174 86.2
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 6.1e-89 330.9 175 88.0
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 2.3e-88 328.9 175 84.0
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 3.0e-88 328.6 175 85.1
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 5.1e-88 327.8 244 67.6
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 2.2e-86 322.4 169 85.8
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 5.0e-83 311.2 174 79.3
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 1.1e-82 310.1 174 78.7
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 7.2e-82 307.4 168 80.4
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 2.2e-78 295.8 150 86.7
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 6.3e-78 294.3 166 78.9
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 6.9e-77 290.8 181 77.9
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 9.1e-77 290.4 175 73.1
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 2.0e-71 272.7 165 70.3
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 2.4e-69 265.8 132 90.2
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 1.2e-68 263.5 131 89.3
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 3.5e-68 261.9 167 75.4
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 7.7e-68 260.8 131 88.5
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 8.5e-67 257.3 164 68.3
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 2.2e-59 232.6 125 83.2
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 6.8e-56 221.1 124 79.8
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 7.5e-55 217.6 119 82.4
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 7.5e-55 217.6 112 86.6
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 4.1e-53 211.8 125 76.0
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 2.7e-52 209.1 171 55.0
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.7e-51 206.5 114 84.2
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 1.2e-49 200.3 112 77.7
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 3.0e-48 195.7 104 84.6
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 2.8e-46 189.1 142 66.2
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 4.0e-40 168.7 95 81.1
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 2.4e-37 159.5 87 82.8
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 5.6e-34 148.3 184 49.5
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 2.2e-30 136.3 114 60.5
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 1.4e-29 133.7 109 59.6
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 4.6e-28 128.6 66 87.9
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 2.7e-20 102.8 92 52.2


User provided reference genes

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