Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 5.4e-120 436.0 706 100.0
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 2.9e-41 174.5 200 49.0
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 3.8e-41 174.1 644 79.7
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 1.5e-40 172.2 192 53.6
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 3.2e-40 171.0 644 86.3
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 4.2e-40 170.6 700 75.0
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 1.2e-39 169.1 167 56.3
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 1.2e-39 169.1 150 57.3
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 1.2e-39 169.1 691 80.5
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 1.0e-38 166.0 695 79.1
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 1.0e-38 166.0 695 79.1
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 1.8e-38 165.2 689 80.0
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 2.3e-38 164.9 156 58.3
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 3.0e-38 164.5 188 50.0
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 3.0e-38 164.5 673 81.6
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 4.0e-38 164.1 695 80.4
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 1.1e-37 162.5 171 54.4
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 1.5e-37 162.2 151 58.9
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 2.6e-37 161.4 171 52.0
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 2.6e-37 161.4 171 52.0
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 2.6e-37 161.4 198 46.5
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 3.3e-37 161.0 148 57.4
Haze_06039 Corylus avellana HOM05D007439 ORTHO05D009294 3.3e-37 161.0 150 55.3
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 3.3e-37 161.0 185 50.3
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 4.4e-37 160.6 134 58.2
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 1.3e-36 159.1 180 48.9
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 1.3e-36 159.1 175 50.3
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 1.3e-36 159.1 677 82.0
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 2.2e-36 158.3 185 48.6
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 2.2e-36 158.3 185 48.6
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 2.2e-36 158.3 185 48.6
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 4.8e-36 157.1 164 48.8
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 6.3e-36 156.8 134 56.0
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 8.2e-36 156.4 667 84.0
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 1.1e-35 156.0 689 75.0
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 1.1e-35 156.0 188 50.0
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 1.4e-35 155.6 689 75.0
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 2.4e-35 154.8 166 51.2
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 2.4e-35 154.8 180 48.9
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 2.4e-35 154.8 181 48.1
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 4.1e-35 154.1 646 84.1
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 4.1e-35 154.1 150 50.0
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 4.1e-35 154.1 134 56.0
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 4.1e-35 154.1 130 55.4
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 5.3e-35 153.7 169 50.3
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 7.0e-35 153.3 179 48.0
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 7.0e-35 153.3 713 79.7
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 2.0e-34 151.8 182 51.6
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 2.0e-34 151.8 125 58.4
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 2.7e-34 151.4 133 56.4
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 3.5e-34 151.0 165 48.5
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 4.5e-34 150.6 189 48.7
Eucgr.E01800 Eucalyptus grandis HOM05D007439 ORTHO05D009294 5.9e-34 150.2 128 54.7
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 7.7e-34 149.8 192 45.3
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 1.7e-33 148.7 646 85.0
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 1.7e-33 148.7 124 57.3
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 2.2e-33 148.3 134 56.0
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 2.2e-33 148.3 135 55.6
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 3.8e-33 147.5 166 49.4
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 3.8e-33 147.5 687 68.4
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.1e-32 146.0 128 53.1
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 2.5e-32 144.8 185 48.1
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 2.5e-32 144.8 134 52.2
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 2.7e-31 141.4 188 47.9
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 3.6e-31 141.0 136 55.1
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 4.7e-31 140.6 174 45.4
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 1.4e-30 139.0 135 53.3
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 1.8e-30 138.7 154 48.7
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 3.4e-29 134.4 158 46.8
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 5.7e-29 133.7 110 60.0
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 7.5e-29 133.3 135 49.6
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 9.8e-29 132.9 126 56.3
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 1.3e-28 132.5 117 53.0
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 2.2e-28 131.7 117 55.6
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 2.2e-28 131.7 113 57.5
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 4.8e-28 130.6 169 46.7
SHI24856 Sapria himalayana HOM05D007439 ORTHO05D009294 4.8e-28 130.6 138 50.0
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 6.3e-28 130.2 137 48.9
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 1.8e-27 128.6 137 48.2
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 1.8e-27 128.6 137 48.2
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 2.4e-27 128.3 124 54.0
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 3.1e-27 127.9 134 48.5
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 5.4e-27 127.1 192 42.2
Haze_06038 Corylus avellana HOM05D007439 ORTHO05D009294 1.2e-26 125.9 126 53.2
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 1.6e-26 125.6 178 44.4
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 2.0e-26 125.2 137 48.2
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 5.9e-26 123.6 196 42.9
Eucgr.E01833 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.2e-24 117.9 84 64.3
Nitab4.5_0000029g0150 Nicotiana tabacum HOM05D007439 ORTHO05D009294 7.2e-24 116.7 126 46.8
RcHm_v2.0_Chr7g0211421 Rosa chinensis HOM05D007439 ORTHO05D009294 1.2e-23 115.9 106 51.9
COL.COLO4_30991 Corchorus olitorius HOM05D007439 ORTHO05D009294 4.7e-23 114.0 82 63.4
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 1.4e-22 112.5 113 47.8
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 4.0e-22 110.9 101 54.5
Eucgr.E01847 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.5e-21 109.0 82 61.0
ATR0049G016 Amborella trichopoda HOM05D007439 ORTHO05D009294 2.6e-21 108.2 134 40.3
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 4.4e-21 107.5 156 38.5
Nitab4.5_0013428g0020 Nicotiana tabacum HOM05D007439 ORTHO05D009294 2.2e-20 105.1 82 59.8
QL11p017775 Quercus lobata HOM05D000038 ORTHO05D000143 8.3e-20 103.2 82 57.3
HPP92_005782 Vanilla planifolia HOM05D007439 ORTHO05D009294 7.0e-19 100.1 101 47.5
Eucgr.E01870 Eucalyptus grandis HOM05D007439 ORTHO05D009294 9.2e-19 99.8 82 54.9
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 1.2e-18 99.4 110 47.3
HPP92_005808 Vanilla planifolia HOM05D007439 ORTHO05D009294 2.0e-18 98.6 101 46.5
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 1.3e-17 95.9 133 40.6
Haze_06045 Corylus avellana HOM05D001622 ORTHO05D009294 2.8e-15 88.2 82 52.4
BcaB06g28505 Brassica carinata HOM05D007439 ORTHO05D009294 5.2e-14 84.0 80 55.0
BolC4t27551H Brassica oleracea HOM05D007439 ORTHO05D009294 5.2e-14 84.0 80 55.0
Eucgr.E01791 Eucalyptus grandis HOM05D007439 ORTHO05D009294 6.8e-14 83.6 61 65.6
C04p60520 Brassica napus HOM05D007439 ORTHO05D009294 2.2e-12 78.6 67 58.2
Zm00001eb167160 Zea mays HOM05D007439 ORTHO05D009294 2.9e-12 78.2 106 38.7
MD10G1232900 Malus domestica HOM05D007439 ORTHO05D009294 1.8e-11 75.5 56 60.7
Os11g0607100 Oryza sativa ssp. japonica HOM05D007439 ORTHO05D009294 3.2e-11 74.7 105 37.1
Eucgr.E01806 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.5e-10 71.2 50 68.0
SEGI_11644 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 5.0e-09 67.4 104 30.8
SEGI_34940 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 5.0e-09 67.4 104 30.8


User provided reference genes

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