Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0008260 Simmondsia chinensis HOM05D000393 ORTHO05D387954 1.2e-92 343.2 172 100.0
Hund05257 Selenicereus undatus HOM05D000393 ORTHO05D000275 7.4e-15 84.7 173 41.6
QL02p001949 Quercus lobata HOM05D000393 ORTHO05D000275 4.8e-14 82.0 180 38.9
Gohir.D05G216400 Gossypium hirsutum HOM05D000393 ORTHO05D000275 5.3e-13 78.6 168 40.5
Thecc.08G082000 Theobroma cacao HOM05D000393 ORTHO05D000275 6.9e-13 78.2 175 41.1
Gohir.A05G213000 Gossypium hirsutum HOM05D000393 ORTHO05D000275 9.1e-13 77.8 164 40.2
CiPaw.15G043400 Carya illinoinensis HOM05D000393 ORTHO05D000275 1.5e-12 77.0 175 38.3
CiPaw.16G031200 Carya illinoinensis HOM05D000393 ORTHO05D000275 2.0e-12 76.6 183 40.4
Hma1.2p1_1068F.1_g253970 Hydrangea macrophylla HOM05D000393 ORTHO05D000275 2.0e-12 76.6 185 37.3
Manes.05G184800 Manihot esculenta HOM05D000393 ORTHO05D000275 4.5e-12 75.5 167 39.5
Duzib116G0818 Durio zibethinus HOM05D000393 ORTHO05D000275 5.9e-12 75.1 175 40.6
MBI16_g05022_MAGBIO Magnolia biondii HOM05D000393 ORTHO05D000275 5.9e-12 75.1 171 38.0
Duzib093G0035 Durio zibethinus HOM05D000393 ORTHO05D000275 1.0e-11 74.3 175 39.4
COL.COLO4_35373 Corchorus olitorius HOM05D000393 ORTHO05D000275 1.3e-11 73.9 160 39.4
Potri.002G113400 Populus trichocarpa HOM05D000393 ORTHO05D000275 8.5e-11 71.2 161 41.6
TAR376G0217 Trochodendron aralioides HOM05D000393 ORTHO05D000275 8.5e-11 71.2 175 40.6
TAR381G0085 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.1e-10 70.9 187 38.0
Duzib041G0530 Durio zibethinus HOM05D000393 ORTHO05D000275 1.9e-10 70.1 75 64.0
Nn5g30693 Nelumbo nucifera HOM05D000393 ORTHO05D000275 1.9e-10 70.1 168 40.5
GSVIVG01009274001 Vitis vinifera HOM05D000393 ORTHO05D000275 1.9e-10 70.1 176 39.2
Gohir.A01G124900 Gossypium hirsutum HOM05D000393 ORTHO05D000275 2.5e-10 69.7 164 37.8
Sabra02G0089900 Salix brachista HOM05D000393 ORTHO05D000275 2.5e-10 69.7 157 40.8
Manes.18G051600 Manihot esculenta HOM05D000393 ORTHO05D000275 4.2e-10 68.9 162 38.9
Sed0022135 Sechium edule HOM05D000393 ORTHO05D000275 4.2e-10 68.9 164 37.8
Haze_18236 Corylus avellana HOM05D000393 ORTHO05D000275 5.5e-10 68.6 171 36.8
Potri.007G008200 Populus trichocarpa HOM05D000393 ORTHO05D000275 7.2e-10 68.2 174 40.8
Gohir.D02G087600 Gossypium hirsutum HOM05D000393 ORTHO05D000275 9.4e-10 67.8 166 38.0
Gorai.005G098200 Gossypium raimondii HOM05D000393 ORTHO05D000275 1.2e-09 67.4 161 34.8
Phvul.001G032150 Phaseolus vulgaris HOM05D000393 ORTHO05D000275 1.2e-09 67.4 160 38.1
Potri.005G147100 Populus trichocarpa HOM05D000393 ORTHO05D000275 2.1e-09 66.6 186 39.2
Sabra07G0006400 Salix brachista HOM05D000393 ORTHO05D000275 2.1e-09 66.6 180 38.9
Gohir.D01G112400 Gossypium hirsutum HOM05D000393 ORTHO05D000275 2.7e-09 66.2 164 38.4
Prupe.1G416800 Prunus persica HOM05D000393 ORTHO05D000275 2.7e-09 66.2 174 35.6
TAR625G0303 Trochodendron aralioides HOM05D000393 ORTHO05D000275 2.7e-09 66.2 170 37.6
Gohir.A02G079700 Gossypium hirsutum HOM05D000393 ORTHO05D000275 3.6e-09 65.9 156 37.2
TWI53G1921 Tripterygium wilfordii HOM05D000393 ORTHO05D000275 3.6e-09 65.9 167 34.7
MD08G1075400 Malus domestica HOM05D000393 ORTHO05D000275 4.7e-09 65.5 185 34.6
Ciclev10026197m.g Citrus clementina HOM05D000393 ORTHO05D000275 6.1e-09 65.1 176 37.5
Cfa017913 Carpinus fangiana HOM05D000393 ORTHO05D000275 8.0e-09 64.7 171 35.1
ClCG05G017650 Citrullus lanatus HOM05D000393 ORTHO05D000275 8.0e-09 64.7 158 39.2
CDE02G1069 Ceratophyllum demersum HOM05D000393 ORTHO05D000275 1.0e-08 64.3 71 54.9
Lj2g0021304 Lotus japonicus HOM05D000393 ORTHO05D000275 1.0e-08 64.3 101 49.5
MD15G1062900 Malus domestica HOM05D000393 ORTHO05D000275 1.0e-08 64.3 185 37.3
TAR628G0931 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.0e-08 64.3 183 37.7
VMungo0647G0985 Vigna mungo HOM05D000393 ORTHO05D000275 1.0e-08 64.3 140 38.6
Cpa.g.sc129.55 Carica papaya HOM05D000393 ORTHO05D000275 1.4e-08 63.9 179 34.1
CiPaw.08G149000 Carya illinoinensis HOM05D000393 ORTHO05D000275 1.4e-08 63.9 177 39.5
Glyma.01G196600 Glycine max HOM05D000393 ORTHO05D000275 1.4e-08 63.9 82 54.9
Aqoxy6G02970 Aquilegia oxysepala HOM05D000393 ORTHO05D000275 1.8e-08 63.5 175 37.7
CDE01G0747 Ceratophyllum demersum HOM05D000393 ORTHO05D000275 1.8e-08 63.5 75 52.0
Dinv44918 Davidia involucrata HOM05D000393 ORTHO05D000275 1.8e-08 63.5 165 38.2
Gorai.002G137300 Gossypium raimondii HOM05D000393 ORTHO05D000275 1.8e-08 63.5 164 37.8
Lj4A749G20 Lonicera japonica HOM05D000393 ORTHO05D000275 2.3e-08 63.2 168 38.7
Nitab4.5_0007233g0010 Nicotiana tabacum HOM05D000393 ORTHO05D000275 3.0e-08 62.8 169 39.6
ClCG01G017920 Citrullus lanatus HOM05D000393 ORTHO05D000275 3.9e-08 62.4 163 39.3
Cc07_g07540 Coffea canephora HOM05D000393 ORTHO05D000275 3.9e-08 62.4 169 37.3
Dinv01228 Davidia involucrata HOM05D000393 ORTHO05D000275 3.9e-08 62.4 163 37.4
Dinv39190 Davidia involucrata HOM05D000393 ORTHO05D000275 3.9e-08 62.4 163 37.4
Glyma.11G045100 Glycine max HOM05D000393 ORTHO05D000275 3.9e-08 62.4 112 46.4
MD15G1302900 Malus domestica HOM05D000393 ORTHO05D000275 3.9e-08 62.4 171 36.8
Gorai.007G057100 Gossypium raimondii HOM05D000393 ORTHO05D000275 5.2e-08 62.0 193 36.3
Manes.13G107400 Manihot esculenta HOM05D000393 ORTHO05D000275 5.2e-08 62.0 172 37.8
CSS0015360 Camellia sinensis var. sinensis HOM05D000393 ORTHO05D000275 6.7e-08 61.6 165 37.0
Nitab4.5_0003478g0060 Nicotiana tabacum HOM05D000393 ORTHO05D000275 6.7e-08 61.6 84 56.0
Gohir.A11G049100 Gossypium hirsutum HOM05D000393 ORTHO05D000275 8.8e-08 61.2 181 35.9
CsaV3_4G035380 Cucumis sativus L. HOM05D000393 ORTHO05D000275 1.1e-07 60.8 112 45.5
MELO3C007666.2 Cucumis melo HOM05D000393 ORTHO05D000275 1.5e-07 60.5 163 41.1
DCAR_015704 Daucus carota HOM05D000393 ORTHO05D000275 1.5e-07 60.5 158 33.5
Gohir.D11G052700 Gossypium hirsutum HOM05D000393 ORTHO05D000275 1.5e-07 60.5 193 35.8
Gohir.D12G077900 Gossypium hirsutum HOM05D000393 ORTHO05D000275 1.5e-07 60.5 182 36.8
TWI77G0130 Tripterygium wilfordii HOM05D000393 ORTHO05D000275 1.5e-07 60.5 164 37.8
Peaxi162Scf00096g01614 Petunia axillaris HOM05D000393 ORTHO05D000275 2.0e-07 60.1 163 40.5
GSVIVG01002447001 Vitis vinifera HOM05D000393 ORTHO05D000275 2.0e-07 60.1 159 37.7
CiPaw.07G038700 Carya illinoinensis HOM05D000393 ORTHO05D000275 2.6e-07 59.7 159 35.2
Eucgr.F02206 Eucalyptus grandis HOM05D000393 ORTHO05D000275 2.6e-07 59.7 89 46.1
MD02G1192800 Malus domestica HOM05D000393 ORTHO05D000275 2.6e-07 59.7 171 35.7
Sed0019516 Sechium edule HOM05D000393 ORTHO05D000275 2.6e-07 59.7 114 44.7
Aqoxy5G00827 Aquilegia oxysepala HOM05D000393 ORTHO05D000275 3.3e-07 59.3 129 40.3
Cfa006790 Carpinus fangiana HOM05D000393 ORTHO05D000275 3.3e-07 59.3 157 36.9
CsaV3_6G044440 Cucumis sativus L. HOM05D000393 ORTHO05D000275 3.3e-07 59.3 166 41.0
Gohir.A12G081000 Gossypium hirsutum HOM05D000393 ORTHO05D000275 3.3e-07 59.3 182 35.2
Lj4A78T26 Lonicera japonica HOM05D000393 ORTHO05D000275 3.3e-07 59.3 167 37.7
Manes.12G118801 Manihot esculenta HOM05D000393 ORTHO05D000275 3.3e-07 59.3 167 36.5
arahy.Tifrunner.gnm1.ann1.8F1G3L Arachis hypogaea HOM05D000393 ORTHO05D000275 4.4e-07 58.9 61 60.7
arahy.Tifrunner.gnm1.ann1.BJY39S Arachis hypogaea HOM05D000393 ORTHO05D000275 4.4e-07 58.9 61 60.7
Thecc.01G078700 Theobroma cacao HOM05D000393 ORTHO05D000275 4.4e-07 58.9 185 35.1
Manes.07G000600 Manihot esculenta HOM05D000393 ORTHO05D000275 7.4e-07 58.2 90 43.3
QL06p038318 Quercus lobata HOM05D000393 ORTHO05D000275 7.4e-07 58.2 99 45.5
Lj1g0007251 Lotus japonicus HOM05D000393 ORTHO05D000275 9.7e-07 57.8 97 40.2
Sopen04g030810 Solanum pennellii HOM05D000393 ORTHO05D000275 9.7e-07 57.8 124 41.9
THA.LOC104802489 Tarenaya hassleriana HOM05D000393 ORTHO05D000275 9.7e-07 57.8 164 34.8
Cc06_g15740 Coffea canephora HOM05D000393 ORTHO05D000275 1.7e-06 57.0 40 72.5
Prupe.6G213800 Prunus persica HOM05D000393 ORTHO05D000275 1.7e-06 57.0 169 36.1
Sed0025275 Sechium edule HOM05D000393 ORTHO05D000275 1.7e-06 57.0 167 33.5
Phvul.002G008600 Phaseolus vulgaris HOM05D000393 ORTHO05D000275 2.2e-06 56.6 81 50.6
Atru.chr3.1081 Acer truncatum HOM05D000393 ORTHO05D000275 2.8e-06 56.2 178 35.4
Gorai.008G086700 Gossypium raimondii HOM05D000393 ORTHO05D000275 2.8e-06 56.2 182 35.7
Nn6g34557 Nelumbo nucifera HOM05D000393 ORTHO05D000275 2.8e-06 56.2 72 54.2
Potri.009G023600 Populus trichocarpa HOM05D000393 ORTHO05D000275 2.8e-06 56.2 134 36.6
QL07p024207 Quercus lobata HOM05D000393 ORTHO05D000275 2.8e-06 56.2 179 30.2
Sabra16G0137100 Salix brachista HOM05D000393 ORTHO05D000275 2.8e-06 56.2 38 76.3
VMungo0251G0684 Vigna mungo HOM05D000393 ORTHO05D000275 2.8e-06 56.2 75 53.3
CiPaw.09G029400 Carya illinoinensis HOM05D000393 ORTHO05D000275 3.7e-06 55.8 107 40.2
Cc06_g20620 Coffea canephora HOM05D000393 ORTHO05D000275 3.7e-06 55.8 85 48.2
Gohir.A11G211000 Gossypium hirsutum HOM05D000393 ORTHO05D000275 3.7e-06 55.8 81 50.6
Gohir.D11G212100 Gossypium hirsutum HOM05D000393 ORTHO05D000275 3.7e-06 55.8 81 50.6
Lj4A169T34 Lonicera japonica HOM05D000393 ORTHO05D000275 3.7e-06 55.8 184 34.2
Manes.10G151200 Manihot esculenta HOM05D000393 ORTHO05D000275 3.7e-06 55.8 97 44.3
Solyc02g091930.3 Solanum lycopersicum HOM05D000393 ORTHO05D000275 3.7e-06 55.8 174 38.5
Sopen02g036500 Solanum pennellii HOM05D000393 ORTHO05D000275 3.7e-06 55.8 174 38.5
TPR.G15989 Trifolium pratense HOM05D000393 ORTHO05D000275 3.7e-06 55.8 108 38.0
TWI12G0863 Tripterygium wilfordii HOM05D000393 ORTHO05D000275 3.7e-06 55.8 158 32.9
TWI56G1033 Tripterygium wilfordii HOM05D000393 ORTHO05D000275 3.7e-06 55.8 35 80.0
VMungo1215G0772 Vigna mungo HOM05D000393 ORTHO05D000275 3.7e-06 55.8 84 50.0
BcaC02g08595 Brassica carinata HOM05D000393 ORTHO05D000275 4.8e-06 55.5 157 37.6
A08p22810 Brassica napus HOM05D000393 ORTHO05D000275 4.8e-06 55.5 169 34.9
BolC4t26791H Brassica oleracea HOM05D000393 ORTHO05D000275 4.8e-06 55.5 157 37.6
BraA08t34247Z Brassica rapa HOM05D000393 ORTHO05D000275 4.8e-06 55.5 169 34.9
Migut.H00315 Erythranthe guttata HOM05D000393 ORTHO05D000275 4.8e-06 55.5 160 38.1
Gorai.007G228000 Gossypium raimondii HOM05D000393 ORTHO05D000275 4.8e-06 55.5 167 35.3
Lalb_Chr09g0329351 Lupinus albus HOM05D000393 ORTHO05D000275 4.8e-06 55.5 100 45.0
MBI16_g08488_MAGBIO Magnolia biondii HOM05D000393 ORTHO05D000275 4.8e-06 55.5 160 35.0
Nitab4.5_0005726g0020 Nicotiana tabacum HOM05D000393 ORTHO05D000275 4.8e-06 55.5 151 37.1
Phvul.009G075300 Phaseolus vulgaris HOM05D000393 ORTHO05D000275 4.8e-06 55.5 154 32.5
Sabra09G0014800 Salix brachista HOM05D000393 ORTHO05D000275 4.8e-06 55.5 134 37.3
HPP92_019570 Vanilla planifolia HOM05D000393 ORTHO05D000275 4.8e-06 55.5 37 75.7
Aqoxy1G00131 Aquilegia oxysepala HOM05D000393 ORTHO05D000275 6.3e-06 55.1 205 29.8
Haze_03968 Corylus avellana HOM05D000393 ORTHO05D000275 6.3e-06 55.1 168 35.7
FAN09G3085 Fragaria x ananassa HOM05D000393 ORTHO05D000275 6.3e-06 55.1 74 47.3
Lj2A424T65 Lonicera japonica HOM05D000393 ORTHO05D000275 6.3e-06 55.1 75 53.3
Manes.08G043900 Manihot esculenta HOM05D000393 ORTHO05D000275 6.3e-06 55.1 108 38.0
Mapoly0069s0069 Marchantia polymorpha HOM05D000393 ORTHO05D000275 6.3e-06 55.1 89 42.7
Potri.001G229700 Populus trichocarpa HOM05D000393 ORTHO05D000275 6.3e-06 55.1 38 73.7
RcHm_v2.0_Chr6g0310291 Rosa chinensis HOM05D000393 ORTHO05D000275 6.3e-06 55.1 157 35.7
SalBow5G3635 Salvia bowleyana HOM05D000393 ORTHO05D000275 6.3e-06 55.1 94 45.7
Aqoxy5G00828 Aquilegia oxysepala HOM05D000393 ORTHO05D000275 8.2e-06 54.7 166 33.1
MSTRG.3489 Avicennia marina HOM05D000393 ORTHO05D000275 8.2e-06 54.7 81 49.4
A04p17370 Brassica napus HOM05D000393 ORTHO05D000275 8.2e-06 54.7 158 38.0
CANSAT56G2635 Cannabis sativa HOM05D000393 ORTHO05D000275 8.2e-06 54.7 192 30.7
CAN.G1061.2 Capsicum annuum HOM05D000393 ORTHO05D000275 8.2e-06 54.7 171 39.8
CiPaw.10G025800 Carya illinoinensis HOM05D000393 ORTHO05D000275 8.2e-06 54.7 98 40.8
FvH4_6g22050 Fragaria vesca HOM05D000393 ORTHO05D000275 8.2e-06 54.7 74 47.3
FAN02G1510 Fragaria x ananassa HOM05D000393 ORTHO05D000275 8.2e-06 54.7 74 47.3
FAN05G0015 Fragaria x ananassa HOM05D000393 ORTHO05D000275 8.2e-06 54.7 74 47.3
FAN14G3370 Fragaria x ananassa HOM05D000393 ORTHO05D000275 8.2e-06 54.7 74 47.3
FAN15G2511 Fragaria x ananassa HOM05D000393 ORTHO05D000275 8.2e-06 54.7 157 36.3
FAN27G1727 Fragaria x ananassa HOM05D000393 ORTHO05D000275 8.2e-06 54.7 163 38.0
MD08G1075500 Malus domestica HOM05D000393 ORTHO05D000275 8.2e-06 54.7 84 46.4
RcHm_v2.0_Chr3g0479361 Rosa chinensis HOM05D000393 ORTHO05D000275 8.2e-06 54.7 74 47.3
SMO118G0183 Selaginella moellendorffii HOM05D000393 ORTHO05D000275 8.2e-06 54.7 38 73.7
VMungo0720G1724 Vigna mungo HOM05D000393 ORTHO05D000275 8.2e-06 54.7 178 31.5


User provided reference genes

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