Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 1.2e-86 323.2 172 100.0
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 4.1e-66 255.0 168 75.6
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 1.2e-65 253.4 163 76.7
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 3.5e-65 251.9 162 76.5
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 4.6e-65 251.5 172 78.5
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 4.6e-65 251.5 168 76.2
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 6.0e-65 251.1 170 75.9
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 7.8e-65 250.8 168 76.2
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 1.3e-64 250.0 168 75.0
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 1.7e-64 249.6 170 75.3
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 1.7e-64 249.6 168 81.0
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 3.0e-64 248.8 168 74.4
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 3.9e-64 248.4 168 75.0
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 1.5e-63 246.5 169 73.4
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 2.5e-63 245.7 162 74.7
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 3.3e-63 245.4 168 73.2
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 4.3e-63 245.0 167 74.3
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 7.3e-63 244.2 170 74.1
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.2e-62 243.4 167 73.7
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 1.2e-62 243.4 168 73.2
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 1.6e-62 243.0 168 73.2
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.6e-62 243.0 167 74.9
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.6e-62 243.0 162 72.8
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.6e-62 243.0 167 74.9
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 2.1e-62 242.7 169 71.6
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 2.1e-62 242.7 169 76.3
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.1e-61 240.4 167 74.3
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 1.4e-61 240.0 168 72.0
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 2.4e-61 239.2 170 74.7
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 6.9e-61 237.7 162 71.6
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 6.9e-61 237.7 169 70.4
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 1.2e-60 236.9 163 72.4
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.0e-60 236.1 168 70.2
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 2.6e-60 235.7 163 71.8
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 2.6e-60 235.7 163 71.2
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 3.4e-60 235.3 167 71.3
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 3.4e-60 235.3 168 70.2
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 3.4e-60 235.3 169 71.6
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 7.6e-60 234.2 168 69.6
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 7.6e-60 234.2 162 71.0
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 9.9e-60 233.8 166 71.1
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 1.3e-59 233.4 166 71.1
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 2.9e-59 232.3 168 69.6
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 3.8e-59 231.9 168 70.8
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 8.4e-59 230.7 175 67.4
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 1.9e-58 229.6 170 68.8
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 3.2e-58 228.8 168 70.8
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 7.1e-58 227.6 168 68.5
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 1.2e-57 226.9 170 68.2
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 6.0e-57 224.6 168 67.9
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 1.7e-56 223.0 163 69.3
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 1.7e-56 223.0 169 68.0
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 2.3e-56 222.6 168 69.0
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 3.0e-56 222.2 168 69.0
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 3.0e-56 222.2 171 67.8
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 3.9e-56 221.9 169 68.0
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.1e-56 221.5 168 67.9
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 5.1e-56 221.5 168 69.0
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 6.6e-56 221.1 167 65.9
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 8.7e-56 220.7 170 67.1
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 8.7e-56 220.7 168 66.1
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 1.9e-55 219.5 170 65.9
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 3.3e-55 218.8 166 66.9
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 3.3e-55 218.8 168 67.9
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 4.3e-55 218.4 170 67.6
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 4.3e-55 218.4 133 78.9
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 4.3e-55 218.4 168 65.5
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 4.3e-55 218.4 254 50.4
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 4.3e-55 218.4 170 65.9
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 4.3e-55 218.4 169 69.2
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 9.6e-55 217.2 168 67.3
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 2.1e-54 216.1 164 66.5
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 3.6e-54 215.3 168 68.5
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 4.8e-54 214.9 199 63.3
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 8.1e-54 214.2 166 68.1
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 1.1e-53 213.8 172 65.1
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 1.4e-53 213.4 128 78.1
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.4e-53 213.4 170 65.9
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 1.8e-53 213.0 170 67.1
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.8e-53 213.0 167 66.5
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 3.1e-53 212.2 172 64.0
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 3.1e-53 212.2 169 64.5
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 3.1e-53 212.2 174 64.9
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 4.0e-53 211.8 172 64.5
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 5.3e-53 211.5 170 64.1
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 6.9e-53 211.1 165 66.7
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 9.0e-53 210.7 168 66.1
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 9.0e-53 210.7 146 69.2
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.5e-52 209.9 168 63.1
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 1.5e-52 209.9 170 67.6
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 1.5e-52 209.9 165 69.7
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 2.0e-52 209.5 173 63.6
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 2.0e-52 209.5 167 65.3
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 2.0e-52 209.5 168 64.9
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 3.4e-52 208.8 171 60.8
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 4.5e-52 208.4 170 63.5
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 4.5e-52 208.4 165 67.9
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 5.8e-52 208.0 172 62.8
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 7.6e-52 207.6 165 66.1
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 2.2e-51 206.1 173 63.0
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.2e-51 206.1 139 70.5
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 2.9e-51 205.7 170 66.5
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 1.4e-50 203.4 170 62.4
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.4e-50 202.6 147 68.0
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.4e-50 202.6 147 68.0
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 2.4e-50 202.6 158 68.4
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 2.4e-50 202.6 171 63.2
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 3.2e-50 202.2 168 63.7
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 4.2e-50 201.8 138 74.6
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 9.3e-50 200.7 147 67.3
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 3.5e-49 198.7 132 72.7
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 3.0e-48 195.7 168 60.7
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 3.0e-48 195.7 166 58.4
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 8.7e-48 194.1 175 60.0
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 4.8e-46 188.3 174 60.9
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 4.8e-46 188.3 126 73.0
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 1.8e-45 186.4 165 60.0
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 2.0e-44 183.0 159 63.5
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 2.6e-44 182.6 170 61.8
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 9.9e-44 180.6 227 47.1
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 2.9e-43 179.1 172 58.7
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 1.1e-42 177.2 169 54.4
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 2.7e-41 172.6 133 65.4
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 2.7e-41 172.6 154 58.4
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 3.0e-40 169.1 126 68.3
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 8.7e-40 167.5 120 67.5
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 2.0e-36 156.4 142 55.6
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 3.4e-36 155.6 127 64.6
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 2.9e-35 152.5 154 53.9
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 3.8e-35 152.1 317 36.3
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 6.5e-35 151.4 167 56.9
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 2.5e-34 149.4 114 67.5
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.6e-28 129.4 128 58.6
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 3.4e-28 129.0 117 57.3
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 3.4e-28 129.0 117 57.3
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 3.4e-28 129.0 117 57.3
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 3.8e-19 99.0 83 57.8
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 2.5e-18 96.3 186 36.0
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.0e-16 90.9 59 69.5
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 8.8e-16 87.8 167 37.1
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 1.1e-15 87.4 181 33.7
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.5e-15 87.0 133 42.1
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 1.4e-13 80.5 61 62.3
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 5.9e-12 75.1 134 39.6
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 7.7e-12 74.7 44 81.8
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 1.7e-11 73.6 160 31.2
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 2.9e-11 72.8 59 61.0
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 8.5e-11 71.2 44 75.0
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 5.5e-10 68.6 65 60.0
Nitab4.5_0005191g0060 Nicotiana tabacum HOM05D000175 ORTHO05D000481 9.7e-07 57.8 64 42.2
MCO02G050 Micromonas commoda HOM05D000175 ORTHO05D000481 1.3e-06 57.4 64 42.2
MCO08G161 Micromonas commoda HOM05D000175 ORTHO05D000481 1.7e-06 57.0 61 47.5
AUR62032379 Chenopodium quinoa HOM05D000175 ORTHO05D000481 2.2e-06 56.6 62 46.8
Nitab4.5_0000621g0080 Nicotiana tabacum HOM05D000175 ORTHO05D000481 2.2e-06 56.6 64 40.6
Solyc07g053615.1 Solanum lycopersicum HOM05D000175 ORTHO05D000481 2.2e-06 56.6 64 42.2
Sopen07g027570 Solanum pennellii HOM05D000175 ORTHO05D000481 2.2e-06 56.6 64 42.2
PGSC0003DMG400009379 Solanum tuberosum HOM05D000175 ORTHO05D000481 2.2e-06 56.6 64 42.2
Peaxi162Scf00845g00119 Petunia axillaris HOM05D000175 ORTHO05D000481 2.8e-06 56.2 62 43.5
Solyc02g077670.3 Solanum lycopersicum HOM05D000175 ORTHO05D000481 2.8e-06 56.2 64 42.2
Sopen02g022570 Solanum pennellii HOM05D000175 ORTHO05D000481 2.8e-06 56.2 64 42.2
PGSC0003DMG400031750 Solanum tuberosum HOM05D000175 ORTHO05D000481 2.8e-06 56.2 64 42.2
Aqoxy1G02281 Aquilegia oxysepala HOM05D000175 ORTHO05D000481 3.7e-06 55.8 64 40.6
Cc05_g07720 Coffea canephora HOM05D000175 ORTHO05D000481 3.7e-06 55.8 64 40.6
Zm00001eb118880 Zea mays HOM05D000175 ORTHO05D000481 3.7e-06 55.8 64 42.2
arahy.Tifrunner.gnm1.ann1.BXCF5W Arachis hypogaea HOM05D005011 ORTHO05D006443 4.8e-06 55.5 64 39.1
CAN.G529.55 Capsicum annuum HOM05D000175 ORTHO05D000481 4.8e-06 55.5 64 40.6
Cpa.g.sc27.4 Carica papaya HOM05D000175 ORTHO05D000481 4.8e-06 55.5 64 42.2
AUR62024840 Chenopodium quinoa HOM05D000175 ORTHO05D000481 4.8e-06 55.5 62 45.2
Eucgr.A01858 Eucalyptus grandis HOM05D000175 ORTHO05D000481 4.8e-06 55.5 64 42.2
Hund07870 Selenicereus undatus HOM05D000175 ORTHO05D000481 4.8e-06 55.5 64 40.6
EL10Ac2g02540 Beta vulgaris HOM05D000175 ORTHO05D000481 6.3e-06 55.1 47 51.1
CAN.G209.2 Capsicum annuum HOM05D000175 ORTHO05D000481 6.3e-06 55.1 64 40.6
Cre10.g420100 Chlamydomonas reinhardtii HOM05D000175 ORTHO05D000481 6.3e-06 55.1 57 45.6
Duzib168G2094 Durio zibethinus HOM05D000175 ORTHO05D000481 6.3e-06 55.1 44 54.5
FAN02G1072 Fragaria x ananassa HOM05D000175 ORTHO05D000481 6.3e-06 55.1 64 42.2
Pp3c2_9790 Physcomitrium patens HOM05D005011 ORTHO05D006443 6.3e-06 55.1 61 47.5
unitig_26.g9089 Utricularia gibba HOM05D000175 ORTHO05D003181 6.3e-06 55.1 64 45.3
Zm00001eb295770 Zea mays HOM05D000175 ORTHO05D000481 6.3e-06 55.1 64 40.6
arahy.Tifrunner.gnm1.ann1.MCGR2R Arachis hypogaea HOM05D000175 ORTHO05D000481 8.2e-06 54.7 64 40.6
SEGI_03168 Sequoiadendron giganteum HOM05D000175 ORTHO05D000481 8.2e-06 54.7 49 49.0
SEGI_23178 Sequoiadendron giganteum HOM05D000175 ORTHO05D000481 8.2e-06 54.7 49 49.0


User provided reference genes

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