Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 1.1e-226 789.6 391 100.0
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 1.2e-172 610.1 399 76.4
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 2.8e-171 605.5 400 75.5
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 1.3e-168 596.7 396 74.2
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 1.5e-167 593.2 397 73.6
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 6.1e-166 587.8 398 73.1
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 1.4e-165 586.6 397 71.8
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 4.0e-165 585.1 397 72.5
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 2.6e-164 582.4 394 74.4
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 3.4e-164 582.0 397 72.3
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 5.7e-164 581.3 397 72.5
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.3e-163 580.1 410 70.7
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 1.3e-163 580.1 404 71.5
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 1.7e-163 579.7 393 72.3
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 1.7e-163 579.7 412 70.1
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.4e-162 576.6 397 72.0
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.4e-162 576.6 397 72.0
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 5.4e-162 574.7 397 71.8
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 3.5e-161 572.0 397 71.5
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.6e-161 571.6 397 71.0
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 7.8e-161 570.9 397 70.0
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 5.0e-160 568.2 399 71.2
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 6.6e-160 567.8 393 72.0
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 6.6e-160 567.8 399 70.9
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 3.3e-159 565.5 397 71.0
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 4.3e-159 565.1 399 70.2
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 4.3e-159 565.1 391 72.4
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 7.3e-159 564.3 391 71.9
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 9.5e-159 563.9 398 71.4
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 9.5e-159 563.9 398 71.9
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.8e-158 562.4 397 70.5
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 3.6e-158 562.0 389 70.2
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 1.0e-157 560.5 397 70.8
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 1.4e-157 560.1 392 69.4
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 2.3e-157 559.3 389 72.0
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.0e-157 558.5 397 70.0
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 4.0e-157 558.5 397 70.3
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 5.2e-157 558.1 400 71.5
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 6.8e-157 557.8 399 70.2
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 2.0e-156 556.2 400 69.0
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 3.4e-156 555.4 400 69.8
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 4.4e-156 555.1 400 70.5
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 4.4e-156 555.1 424 66.7
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 3.7e-155 552.0 397 68.5
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 2.4e-154 549.3 393 69.7
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 2.4e-154 549.3 397 68.3
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.4e-154 549.3 400 69.8
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 4.1e-154 548.5 396 69.9
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 7.0e-154 547.7 397 69.8
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.2e-153 547.0 410 68.5
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 2.7e-153 545.8 393 69.0
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 6.0e-153 544.7 390 67.9
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.3e-152 542.7 414 67.6
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 3.0e-152 542.3 398 69.3
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 3.0e-152 542.3 426 65.5
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 1.9e-151 539.7 443 64.3
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 1.9e-151 539.7 398 69.1
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 5.6e-151 538.1 390 66.9
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 7.3e-151 537.7 394 69.5
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 1.2e-150 537.0 392 67.3
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 1.6e-150 536.6 424 65.3
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 1.6e-150 536.6 393 69.2
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 3.6e-150 535.4 392 66.6
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 6.2e-150 534.6 393 66.9
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 6.2e-150 534.6 393 66.9
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 3.1e-149 532.3 399 68.7
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 4.0e-149 531.9 396 68.4
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 4.4e-148 528.5 396 67.9
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 9.8e-148 527.3 396 67.7
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 1.7e-147 526.6 390 66.7
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 4.9e-147 525.0 391 68.0
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 4.1e-146 521.9 397 65.7
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 5.4e-146 521.5 388 67.8
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 7.1e-146 521.2 391 67.3
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 2.1e-145 519.6 386 66.6
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 2.7e-145 519.2 389 67.6
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 7.8e-145 517.7 397 65.2
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 3.6e-142 508.8 392 65.6
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 3.6e-142 508.8 406 65.3
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 6.8e-141 504.6 397 65.7
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 4.4e-140 501.9 401 65.6
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 9.9e-140 500.7 392 65.1
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 6.4e-139 498.0 397 64.7
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 6.4e-139 498.0 358 70.7
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 9.2e-138 494.2 402 64.4
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 9.2e-138 494.2 401 63.8
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 6.0e-137 491.5 386 64.8
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 1.2e-134 483.8 393 61.6
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 4.7e-134 481.9 388 63.7
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 1.8e-133 479.9 403 63.0
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 1.5e-132 476.9 398 61.8
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 3.8e-131 472.2 409 59.9
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 6.6e-128 461.5 397 62.0
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.1e-126 456.4 431 57.5
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 1.5e-124 450.3 309 74.4
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 2.1e-121 439.9 396 58.8
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.3e-120 437.2 386 59.1
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.1e-119 434.1 392 58.2
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.1e-119 434.1 386 58.8
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 4.3e-119 432.2 377 59.9
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 4.3e-119 432.2 415 57.8
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 7.4e-119 431.4 393 57.0
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 7.4e-119 431.4 390 59.5
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 2.0e-116 423.3 382 58.9
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 4.2e-114 415.6 391 57.0
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 2.4e-109 399.8 437 52.9
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 2.0e-108 396.7 269 69.9
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 5.1e-96 355.5 428 49.1
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 1.6e-94 350.5 302 57.9
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 2.2e-94 350.1 395 49.1
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 8.2e-94 348.2 302 57.9
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 6.5e-91 338.6 391 50.6
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 3.1e-85 319.7 392 46.4
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 2.5e-82 310.1 378 45.8
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 5.5e-82 308.9 274 58.8
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 1.3e-78 297.7 419 43.2
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 2.1e-73 280.4 236 58.9
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 7.5e-71 271.9 252 56.3
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 5.5e-66 255.8 337 46.6
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 3.4e-63 246.5 351 44.7
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 2.9e-59 233.4 155 69.0
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 7.0e-53 212.2 158 69.6
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 6.0e-36 156.0 117 70.9
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 1.8e-32 144.4 99 69.7
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 5.2e-32 142.9 89 79.8
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.0e-31 141.0 109 66.1
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 5.8e-31 139.4 109 65.1
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.8e-31 138.7 109 66.1
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 5.4e-29 132.9 126 56.3
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.1e-29 132.5 109 63.3
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 2.3e-27 127.5 98 72.4
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 2.6e-23 114.0 103 60.2
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 8.4e-22 109.0 79 64.6
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.6e-20 104.8 68 76.5
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 7.6e-15 85.9 85 58.8
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 2.9e-14 84.0 56 69.6
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.1e-13 79.3 52 75.0
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 6.0e-12 76.3 94 44.7
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 5.6e-10 69.7 64 53.1
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 9.6e-10 68.9 267 25.1
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 5.8e-07 59.7 45 55.6


User provided reference genes

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