Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0007350 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.9e-130 469.2 231 100.0
Sc16g0001350 Simmondsia chinensis HOM05D009348 ORTHO05D010856 6.2e-33 145.2 163 46.6
Sc21g0001740 Simmondsia chinensis HOM05D011136 ORTHO05D010856 5.3e-24 115.5 177 36.7
Sc02g0003510 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.0e-19 101.3 196 32.7
Sc07g0002530 Simmondsia chinensis HOM05D011136 ORTHO05D010856 3.0e-19 99.8 105 44.8
Sc13g0007440 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.1e-17 93.6 107 41.1
Sc01g0002340 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.5e-15 87.4 107 37.4
Sc10g0009390 Simmondsia chinensis HOM05D011136 ORTHO05D010856 2.6e-15 86.7 109 33.0
Sc10g0010640 Simmondsia chinensis HOM05D011136 ORTHO05D010856 5.8e-15 85.5 260 26.5
Sc08g0006410 Simmondsia chinensis HOM05D011136 ORTHO05D010856 9.3e-13 78.2 107 32.7
Sc03g0004450 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.2e-12 77.8 204 27.5
Sc11g0007570 Simmondsia chinensis HOM05D000027 ORTHO05D000500 1.6e-12 77.4 121 34.7
Sc21g0004040 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.1e-12 77.0 108 34.3
Sc07g0000050 Simmondsia chinensis HOM05D009348 ORTHO05D010856 4.6e-12 75.9 107 31.8
Sc06g0006060 Simmondsia chinensis HOM05D011136 ORTHO05D010856 6.0e-12 75.5 76 44.7
Sc16g0001340 Simmondsia chinensis HOM05D009348 ORTHO05D010856 7.9e-12 75.1 107 29.9
Sc06g0001740 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.3e-11 74.3 71 42.3
arahy.Tifrunner.gnm1.ann1.2029P5 Arachis hypogaea HOM05D012808 ORTHO05D011705 1.9e-10 70.5 88 34.1
vmacro00512 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 2.5e-10 70.1 97 34.0
Sc03g0004340 Simmondsia chinensis HOM05D009348 ORTHO05D010856 7.4e-10 68.6 174 27.6
Sc07g0003070 Simmondsia chinensis HOM05D009348 ORTHO05D010856 9.7e-10 68.2 74 44.6
Sc02g0007120 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.6e-09 67.4 61 41.0
Sc14g0002520 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.6e-09 67.4 103 31.1
Rhsim05G0024200 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.1e-08 64.7 96 35.4
Rhsim05G0113800 Rhododendron simsii HOM05D010265 ORTHO05D009356 1.1e-08 64.7 98 32.7
Rhsim11G0150800 Rhododendron simsii HOM05D012808 ORTHO05D009356 1.8e-08 63.9 123 29.3
RhsimUnG0239600 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.8e-08 63.9 96 29.2
Sc03g0004550 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.1e-08 63.2 108 27.8
Gohir.A10G205900 Gossypium hirsutum HOM05D000003 ORTHO05D000006 6.9e-08 62.0 123 26.8
Sc15g0003580 Simmondsia chinensis HOM05D009209 ORTHO05D011705 9.0e-08 61.6 82 32.9
EL10Ac7g16632 Beta vulgaris HOM05D008976 ORTHO05D011121 1.5e-07 60.8 108 30.6
CSS0004424 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 1.5e-07 60.8 100 31.0
CSS0042161 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 2.0e-07 60.5 106 31.1
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 2.6e-07 60.1 87 36.8
Sc04g0004290 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.6e-07 60.1 97 26.8
TPR.G18402 Trifolium pratense HOM05D002777 ORTHO05D001516 2.6e-07 60.1 105 29.5
EL10Ac4g10257 Beta vulgaris HOM05D008976 ORTHO05D011121 3.4e-07 59.7 121 30.6
Actinidia34556 Actinidia chinensis HOM05D008219 ORTHO05D009356 4.5e-07 59.3 99 31.3
EL10Ac6g15678 Beta vulgaris HOM05D008976 ORTHO05D011121 5.9e-07 58.9 108 31.5
CSS0025340 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 5.9e-07 58.9 106 30.2
DCAR_022472 Daucus carota HOM05D004122 ORTHO05D004468 5.9e-07 58.9 125 22.4
Sc19g0004470 Simmondsia chinensis HOM05D011136 ORTHO05D010856 5.9e-07 58.9 72 33.3
CSS0000615 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 7.7e-07 58.5 106 30.2
Sc04g0005170 Simmondsia chinensis HOM05D009348 ORTHO05D010856 7.7e-07 58.5 68 38.2
EL10Ac4g09831 Beta vulgaris HOM05D008976 ORTHO05D011121 1.0e-06 58.2 100 33.0
EL10Ac7g17245 Beta vulgaris HOM05D008976 ORTHO05D011121 1.0e-06 58.2 100 33.0
vmacro21908 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 1.0e-06 58.2 98 30.6
EL10Ac1g00211 Beta vulgaris HOM05D008976 ORTHO05D011121 1.3e-06 57.8 131 30.5
Sc04g0004590 Simmondsia chinensis HOM05D027330 ORTHO05D010856 1.3e-06 57.8 103 29.1
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 1.3e-06 57.8 126 27.8
EL10Ac1g00331 Beta vulgaris HOM05D008976 ORTHO05D011121 1.7e-06 57.4 108 26.9
EL10Ac3g05379 Beta vulgaris HOM05D008976 ORTHO05D011121 1.7e-06 57.4 143 30.8
Lsat_1_v5_gn_2_49501 Lactuca sativa HOM05D003915 ORTHO05D005386 1.7e-06 57.4 130 26.2
Ah.03g145270 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.2e-06 57.0 148 28.4
Sc15g0000880 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.9e-06 56.6 61 34.4
Manes.06G033475 Manihot esculenta HOM05D009258 ORTHO05D001516 3.8e-06 56.2 106 24.5
EL10Ac6g15260 Beta vulgaris HOM05D008976 ORTHO05D011121 5.0e-06 55.8 110 31.8
Lsat_1_v5_gn_8_26961 Lactuca sativa HOM05D003915 ORTHO05D005386 6.5e-06 55.5 103 30.1
Thecc.07G067600 Theobroma cacao HOM05D023671 ORTHO05D001516 6.5e-06 55.5 97 25.8
Gohir.A01G136601 Gossypium hirsutum HOM05D000003 ORTHO05D015081 8.5e-06 55.1 80 27.5
vmacro06592 Vaccinium macrocarpon HOM05D000211 ORTHO05D002285 8.5e-06 55.1 109 26.6


User provided reference genes

Program Settings