Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 4.2e-144 514.6 250 100.0
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 6.2e-103 377.9 252 71.4
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 3.2e-99 365.5 255 69.0
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.2e-95 353.6 252 69.0
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.6e-95 353.2 252 69.0
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 1.1e-94 350.5 246 70.7
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 7.6e-93 344.4 253 67.6
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 2.9e-92 342.4 259 66.0
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 4.9e-92 341.7 256 67.6
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 4.1e-91 338.6 256 68.4
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 9.2e-91 337.4 259 66.4
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 9.2e-91 337.4 260 65.0
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.1e-90 336.3 260 65.4
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.7e-90 335.9 246 69.1
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 4.6e-90 335.1 260 64.6
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 7.8e-90 334.3 253 66.0
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.3e-89 332.8 258 68.2
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 3.9e-89 332.0 259 66.8
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 5.1e-89 331.6 217 71.0
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 3.3e-88 328.9 257 64.6
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 3.3e-88 328.9 250 65.2
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 3.3e-88 328.9 264 64.4
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 4.3e-88 328.6 251 66.9
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 5.6e-88 328.2 255 64.7
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 5.6e-88 328.2 256 64.5
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 2.1e-87 326.2 240 67.5
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 3.6e-87 325.5 258 64.3
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 4.7e-87 325.1 255 63.9
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 8.1e-87 324.3 256 64.5
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.1e-86 323.9 253 64.8
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.1e-86 323.9 252 66.7
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.1e-86 323.9 252 66.7
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.4e-86 323.6 249 65.5
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.8e-86 323.2 259 64.1
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 8.9e-86 320.9 259 63.7
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 8.9e-86 320.9 256 62.5
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.5e-85 320.1 224 70.5
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 2.0e-85 319.7 178 82.0
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 2.6e-85 319.3 256 62.5
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 4.4e-85 318.5 256 62.1
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.8e-85 318.2 255 63.5
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 7.6e-85 317.8 253 64.8
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.3e-84 317.0 252 63.1
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 1.3e-84 317.0 258 62.8
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.7e-84 316.6 244 63.9
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.7e-84 316.6 257 62.3
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 2.2e-84 316.2 253 62.8
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 4.9e-84 315.1 248 62.1
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 4.9e-84 315.1 255 63.9
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 6.4e-84 314.7 256 61.7
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 6.4e-84 314.7 245 64.5
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.4e-84 314.3 261 60.5
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.1e-83 313.9 252 64.7
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.1e-83 313.9 256 61.7
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.1e-83 313.9 260 60.8
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.2e-83 312.0 256 60.9
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 5.4e-83 311.6 253 60.9
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 7.1e-83 311.2 229 65.5
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 7.1e-83 311.2 253 64.0
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 9.3e-83 310.8 203 70.9
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-82 310.1 253 62.8
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 2.1e-82 309.7 256 62.5
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.1e-82 309.7 258 60.9
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 2.1e-82 309.7 245 65.7
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.7e-82 309.3 252 64.3
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 1.0e-81 307.4 247 64.4
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 2.3e-81 306.2 178 80.3
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 3.0e-81 305.8 244 63.5
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 3.9e-81 305.4 251 64.9
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.9e-81 305.4 251 64.9
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 8.7e-81 304.3 257 60.3
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.1e-80 303.9 260 60.4
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.9e-80 303.1 258 58.5
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 1.9e-80 303.1 258 57.4
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 2.5e-80 302.8 258 59.3
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 2.5e-80 302.8 256 58.6
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 5.6e-80 301.6 257 59.1
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.6e-80 301.6 253 62.8
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 4.8e-79 298.5 221 64.7
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.1e-78 297.4 261 58.6
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.8e-78 296.6 244 61.5
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 1.8e-78 296.6 290 54.1
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.8e-78 296.6 243 61.3
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 2.4e-78 296.2 171 79.5
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 2.4e-78 296.2 172 76.2
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 2.4e-78 296.2 172 76.2
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 4.0e-78 295.4 211 65.9
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 4.0e-78 295.4 244 61.5
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 4.0e-78 295.4 257 57.2
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 6.9e-78 294.7 190 71.6
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 9.0e-78 294.3 257 56.4
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 1.2e-77 293.9 252 57.1
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.5e-77 293.5 255 57.6
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.5e-77 293.5 253 59.7
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 2.0e-77 293.1 265 57.7
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 2.0e-77 293.1 252 58.7
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 4.5e-77 292.0 255 58.0
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 5.8e-77 291.6 257 55.6
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 7.6e-77 291.2 261 56.3
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.3e-76 290.4 249 58.2
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 1.3e-76 290.4 246 61.0
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 6.4e-76 288.1 255 57.3
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.9e-75 286.6 239 59.4
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 1.9e-75 286.6 253 58.9
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 2.4e-75 286.2 254 56.7
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 3.2e-75 285.8 241 62.2
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 5.4e-75 285.0 248 57.7
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 7.1e-75 284.6 256 56.2
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.2e-74 283.9 251 57.0
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 1.6e-74 283.5 265 56.6
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 2.1e-74 283.1 179 74.3
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 7.9e-74 281.2 257 56.0
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.0e-73 280.8 176 72.2
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 1.0e-73 280.8 252 56.7
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 3.0e-73 279.3 194 68.0
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.5e-72 276.9 240 56.7
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 3.3e-72 275.8 250 59.2
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 3.6e-71 272.3 221 60.6
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 5.8e-69 265.0 151 83.4
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.3e-68 263.8 256 54.7
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 1.6e-66 256.9 174 69.5
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 2.7e-66 256.1 215 59.5
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 6.0e-66 255.0 215 58.6
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 6.7e-65 251.5 215 60.0
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 8.7e-65 251.1 232 56.0
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 8.7e-65 251.1 150 78.0
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 1.8e-62 243.4 216 58.3
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 2.0e-61 240.0 137 78.8
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 4.5e-61 238.8 166 65.1
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 3.8e-60 235.7 199 58.8
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 1.9e-59 233.4 212 56.1
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 3.2e-59 232.6 257 50.2
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 3.5e-58 229.2 166 62.0
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 6.7e-57 224.9 164 64.0
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 8.7e-57 224.6 162 65.4
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 4.3e-56 222.2 170 58.8
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.3e-55 220.7 148 67.6
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.6e-55 220.3 257 49.0
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.6e-55 220.3 252 48.0
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.1e-54 217.6 152 68.4
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.2e-53 214.2 155 67.1
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 3.4e-53 212.6 252 49.2
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.5e-51 206.5 172 56.4
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 4.8e-47 192.2 116 75.0
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 3.2e-35 152.9 90 76.7
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 6.7e-33 145.2 95 70.5
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-32 144.1 215 42.8
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 2.6e-32 143.3 145 51.7
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 5.7e-32 142.1 142 52.8
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.0e-29 133.7 84 73.8
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.6e-29 133.3 88 69.3
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 6.5e-28 128.6 65 89.2
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.0e-25 121.3 215 30.7
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 6.7e-25 118.6 141 42.6
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 1.5e-24 117.5 78 70.5
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 4.8e-23 112.5 63 81.0
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-21 107.8 73 67.1
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.4e-17 94.4 97 49.5
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.8e-17 94.0 67 62.7
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.4e-14 84.3 86 48.8
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.5e-12 75.5 51 64.7
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 1.1e-11 74.7 48 68.8
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 4.2e-11 72.8 39 76.9
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.1e-10 68.9 51 60.8
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 6.1e-10 68.9 51 60.8
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.9e-07 59.3 43 62.8
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 6.3e-07 58.9 37 73.0
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 3.1e-06 56.6 35 71.4


User provided reference genes

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