Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0006970 Simmondsia chinensis HOM05D003291 ORTHO05D003923 8.6e-102 373.6 185 100.0
Sc02g0006950 Simmondsia chinensis HOM05D003291 ORTHO05D003923 1.1e-88 330.1 167 96.4
COL.COLO4_26461 Corchorus olitorius HOM05D003291 ORTHO05D003923 4.6e-71 271.6 166 77.7
Hma1.2p1_0260F.1_g104760 Hydrangea macrophylla HOM05D003291 ORTHO05D003923 7.9e-71 270.8 165 79.4
CiPaw.16G047600 Carya illinoinensis HOM05D003291 ORTHO05D003923 1.8e-70 269.6 161 80.1
HanXRQChr02g0056101 Helianthus annuus HOM05D003291 ORTHO05D003923 1.8e-70 269.6 151 84.8
Lalb_Chr22g0355231 Lupinus albus HOM05D003291 ORTHO05D003923 1.8e-70 269.6 158 80.4
ECA246G0633 Erigeron canadensis HOM05D003291 ORTHO05D003923 3.0e-70 268.9 151 85.4
Cpa.g.sc297.1 Carica papaya HOM05D003291 ORTHO05D003923 3.9e-70 268.5 158 82.3
VMungo0647G0987 Vigna mungo HOM05D003291 ORTHO05D003923 6.7e-70 267.7 160 79.4
Atru.chr13.635 Acer truncatum HOM05D003291 ORTHO05D003923 1.9e-69 266.2 158 79.7
Rhsim06G0046900 Rhododendron simsii HOM05D003291 ORTHO05D003923 2.5e-69 265.8 156 80.8
Cfa018512 Carpinus fangiana HOM05D003291 ORTHO05D003923 4.3e-69 265.0 161 78.9
arahy.Tifrunner.gnm1.ann1.H8JSRB Arachis hypogaea HOM05D003291 ORTHO05D003923 5.6e-69 264.6 167 76.0
arahy.Tifrunner.gnm1.ann1.NP9S9N Arachis hypogaea HOM05D003291 ORTHO05D003923 5.6e-69 264.6 167 76.0
AUR62039319 Chenopodium quinoa HOM05D003291 ORTHO05D003923 5.6e-69 264.6 162 76.5
Haze_17563 Corylus avellana HOM05D003291 ORTHO05D003923 5.6e-69 264.6 161 78.9
Duzib093G1598 Durio zibethinus HOM05D003291 ORTHO05D003923 5.6e-69 264.6 168 77.4
Gohir.D05G203800 Gossypium hirsutum HOM05D003291 ORTHO05D003923 5.6e-69 264.6 157 79.0
AUR62022448 Chenopodium quinoa HOM05D003291 ORTHO05D003923 7.4e-69 264.2 162 76.5
Oeu009557.1 Olea europaea HOM05D003291 ORTHO05D003923 7.4e-69 264.2 165 76.4
Gorai.009G209900 Gossypium raimondii HOM05D003291 ORTHO05D003923 9.6e-69 263.8 154 80.5
Lj5g0021120 Lotus japonicus HOM05D003291 ORTHO05D003923 9.6e-69 263.8 160 77.5
PGR031G1546 Punica granatum HOM05D003291 ORTHO05D003923 9.6e-69 263.8 158 80.4
EL10Ac1g01777 Beta vulgaris HOM05D003291 ORTHO05D003923 1.3e-68 263.5 162 77.2
Lalb_Chr14g0368841 Lupinus albus HOM05D003291 ORTHO05D003923 1.3e-68 263.5 158 76.6
Phvul.001G019800 Phaseolus vulgaris HOM05D003291 ORTHO05D003923 1.3e-68 263.5 155 80.0
Psat6g012080 Pisum sativum HOM05D003291 ORTHO05D003923 1.6e-68 263.1 164 76.2
Glyma.14G080800 Glycine max HOM05D003291 ORTHO05D003923 2.1e-68 262.7 160 77.5
Gohir.A05G200600 Gossypium hirsutum HOM05D003291 ORTHO05D003923 2.1e-68 262.7 154 79.9
Manes.05G171000 Manihot esculenta HOM05D003291 ORTHO05D003923 2.8e-68 262.3 165 76.4
Nitab4.5_0000068g0460 Nicotiana tabacum HOM05D003291 ORTHO05D003923 2.8e-68 262.3 168 76.8
Lj4A52T42 Lonicera japonica HOM05D003291 ORTHO05D003923 3.6e-68 261.9 162 77.2
CAN.G1422.3 Capsicum annuum HOM05D003291 ORTHO05D003923 4.8e-68 261.5 168 76.8
FvH4_2g34860 Fragaria vesca HOM05D003291 ORTHO05D003923 4.8e-68 261.5 157 79.6
Hma1.2p1_0337F.1_g129290 Hydrangea macrophylla HOM05D003291 ORTHO05D003923 4.8e-68 261.5 154 80.5
Potri.014G034400 Populus trichocarpa HOM05D003291 ORTHO05D003923 4.8e-68 261.5 161 76.4
TAR625G0168 Trochodendron aralioides HOM05D003291 ORTHO05D003923 4.8e-68 261.5 167 76.6
vmacro21555 Vaccinium macrocarpon HOM05D003291 ORTHO05D003923 4.8e-68 261.5 160 78.8
CANSAT25G2224 Cannabis sativa HOM05D003291 ORTHO05D003923 8.1e-68 260.8 165 77.6
FAN20G0796 Fragaria x ananassa HOM05D003291 ORTHO05D003923 8.1e-68 260.8 157 79.6
HanXRQChr10g0304011 Helianthus annuus HOM05D003291 ORTHO05D003923 8.1e-68 260.8 163 79.1
TAR381G0638 Trochodendron aralioides HOM05D003291 ORTHO05D003923 8.1e-68 260.8 166 77.1
Actinidia15259 Actinidia chinensis HOM05D003291 ORTHO05D003923 1.1e-67 260.4 154 81.8
Ciclev10000140m.g Citrus clementina HOM05D003291 ORTHO05D003923 1.1e-67 260.4 153 78.4
ClCG08G015660 Citrullus lanatus HOM05D003291 ORTHO05D003923 1.4e-67 260.0 152 81.6
Nitab4.5_0011844g0020 Nicotiana tabacum HOM05D003291 ORTHO05D003923 1.4e-67 260.0 168 76.8
Thecc.08G012800 Theobroma cacao HOM05D003291 ORTHO05D003923 1.4e-67 260.0 165 77.0
TWI56G0991 Tripterygium wilfordii HOM05D003291 ORTHO05D003923 1.8e-67 259.6 162 77.2
Aqoxy6G01378 Aquilegia oxysepala HOM05D003291 ORTHO05D003923 2.4e-67 259.2 155 80.6
FAN15G0927 Fragaria x ananassa HOM05D003291 ORTHO05D003923 2.4e-67 259.2 157 79.0
FAN27G0136 Fragaria x ananassa HOM05D003291 ORTHO05D003923 2.4e-67 259.2 157 79.6
GSVIVG01009556001 Vitis vinifera HOM05D003291 ORTHO05D003923 2.4e-67 259.2 160 80.0
Ca_13307_v3 Cicer arietinum L. HOM05D003291 ORTHO05D003923 3.1e-67 258.8 166 74.7
Sed0000864 Sechium edule HOM05D003291 ORTHO05D003923 3.1e-67 258.8 157 77.7
Ah.05g168860 Amaranthus hybridus HOM05D003291 ORTHO05D003923 4.0e-67 258.5 162 75.3
CAN.G371.46 Capsicum annuum HOM05D003291 ORTHO05D003923 4.0e-67 258.5 166 75.9
Glyma.17G244600 Glycine max HOM05D003291 ORTHO05D003923 5.3e-67 258.1 160 76.2
Solyc12g088920.2 Solanum lycopersicum HOM05D003291 ORTHO05D003923 6.9e-67 257.7 168 75.6
Sopen12g030820 Solanum pennellii HOM05D003291 ORTHO05D003923 6.9e-67 257.7 168 75.6
Lsat_1_v5_gn_6_113580 Lactuca sativa HOM05D003291 ORTHO05D003923 9.0e-67 257.3 151 82.1
Nitab4.5_0005301g0010 Nicotiana tabacum HOM05D003291 ORTHO05D003923 9.0e-67 257.3 166 75.9
Hund17590 Selenicereus undatus HOM05D003291 ORTHO05D003923 1.2e-66 256.9 162 75.9
PGSC0003DMG400015447 Solanum tuberosum HOM05D003291 ORTHO05D003923 1.2e-66 256.9 168 75.6
Dinv35983 Davidia involucrata HOM05D003291 ORTHO05D003923 1.5e-66 256.5 165 77.0
Prupe.1G440500 Prunus persica HOM05D003291 ORTHO05D003923 2.0e-66 256.1 171 74.9
RcHm_v2.0_Chr6g0307181 Rosa chinensis HOM05D003291 ORTHO05D003923 2.0e-66 256.1 153 80.4
Solyc04g079300.3 Solanum lycopersicum HOM05D003291 ORTHO05D003923 2.0e-66 256.1 156 81.4
Eucgr.B02922 Eucalyptus grandis HOM05D003291 ORTHO05D003923 2.6e-66 255.8 166 75.3
QL02p005794 Quercus lobata HOM05D003291 ORTHO05D003923 2.6e-66 255.8 166 74.1
Carub.0006s3091 Capsella rubella HOM05D003291 ORTHO05D003923 3.4e-66 255.4 157 79.0
MD00G1187500 Malus domestica HOM05D003291 ORTHO05D003923 4.5e-66 255.0 153 80.4
Nitab4.5_0000453g0160 Nicotiana tabacum HOM05D003291 ORTHO05D003923 4.5e-66 255.0 168 75.0
Eucgr.F02708 Eucalyptus grandis HOM05D003291 ORTHO05D003923 5.8e-66 254.6 154 78.6
PSO210G0952 Papaver somniferum HOM05D003291 ORTHO05D003923 5.8e-66 254.6 160 75.6
Sopen04g032890 Solanum pennellii HOM05D003291 ORTHO05D003923 5.8e-66 254.6 151 82.1
ATR0709G069 Amborella trichopoda HOM05D003291 ORTHO05D003923 7.6e-66 254.2 160 75.6
AT4G11800 Arabidopsis thaliana HOM05D003291 ORTHO05D003923 9.9e-66 253.8 159 77.4
ECA232G2639 Erigeron canadensis HOM05D003291 ORTHO05D003923 9.9e-66 253.8 162 77.2
Peaxi162Scf00528g00823 Petunia axillaris HOM05D003291 ORTHO05D003923 9.9e-66 253.8 168 75.6
MSTRG.1333 Avicennia marina HOM05D003291 ORTHO05D003923 1.3e-65 253.4 163 75.5
SHI08307 Sapria himalayana HOM05D003291 ORTHO05D003923 1.7e-65 253.1 158 74.7
HanXRQChr16g0507451 Helianthus annuus HOM05D003291 ORTHO05D003923 2.2e-65 252.7 154 79.2
MD15G1086800 Malus domestica HOM05D003291 ORTHO05D003923 2.9e-65 252.3 153 79.1
Peaxi162Scf00064g00220 Petunia axillaris HOM05D003291 ORTHO05D003923 2.9e-65 252.3 164 76.8
Aa31LG9G10630 Aethionema arabicum HOM05D003291 ORTHO05D003923 3.8e-65 251.9 157 79.0
CDE03G0102 Ceratophyllum demersum HOM05D003291 ORTHO05D003923 3.8e-65 251.9 153 79.1
CSS0046933 Camellia sinensis var. sinensis HOM05D003291 ORTHO05D003923 4.9e-65 251.5 153 80.4
DCAR_028414 Daucus carota HOM05D003291 ORTHO05D003923 4.9e-65 251.5 165 72.7
Medtr1g020000 Medicago truncatula HOM05D003291 ORTHO05D003923 4.9e-65 251.5 168 72.0
PGSC0003DMG400008030 Solanum tuberosum HOM05D003291 ORTHO05D003923 4.9e-65 251.5 154 79.2
Migut.C00602 Erythranthe guttata HOM05D003291 ORTHO05D003923 6.4e-65 251.1 153 79.1
Os07g0106000 Oryza sativa ssp. japonica HOM05D003291 ORTHO05D003923 6.4e-65 251.1 161 72.7
Sp6g05650 Schrenkiella parvula HOM05D003291 ORTHO05D003923 8.4e-65 250.8 159 76.1
AL6G46510 Arabidopsis lyrata HOM05D003291 ORTHO05D003923 1.1e-64 250.4 159 75.5
Lsat_1_v5_gn_4_124081 Lactuca sativa HOM05D003291 ORTHO05D003923 1.4e-64 250.0 162 75.3
TPR.G13691 Trifolium pratense HOM05D003291 ORTHO05D003923 1.9e-64 249.6 162 74.7
unitig_26.g9818 Utricularia gibba HOM05D003291 ORTHO05D003923 1.9e-64 249.6 166 74.1
A09p27310 Brassica napus HOM05D003291 ORTHO05D003923 2.4e-64 249.2 159 76.1
CSS0029839 Camellia sinensis var. sinensis HOM05D003291 ORTHO05D003923 2.4e-64 249.2 157 75.2
Duzib116G0711 Durio zibethinus HOM05D003291 ORTHO05D003923 2.4e-64 249.2 155 77.4
SalBow6G1638 Salvia bowleyana HOM05D003291 ORTHO05D003923 2.4e-64 249.2 153 77.1
SalBow6G6854 Salvia bowleyana HOM05D003291 ORTHO05D003923 2.4e-64 249.2 153 77.1
CSS0020917 Camellia sinensis var. sinensis HOM05D003291 ORTHO05D003923 3.2e-64 248.8 157 75.2
Thhalv10028387m.g Eutrema salsugineum HOM05D003291 ORTHO05D003923 3.2e-64 248.8 159 75.5
Zm00001eb298290 Zea mays HOM05D003291 ORTHO05D003923 3.2e-64 248.8 159 72.3
BcaB01g01679 Brassica carinata HOM05D003291 ORTHO05D003923 4.2e-64 248.4 160 75.6
MELO3C010890.2 Cucumis melo HOM05D003291 ORTHO05D003923 4.2e-64 248.4 157 77.1
BcaC03g16327 Brassica carinata HOM05D003291 ORTHO05D003923 9.3e-64 247.3 159 75.5
A02p25980 Brassica napus HOM05D003291 ORTHO05D003923 9.3e-64 247.3 159 75.5
C02p41460 Brassica napus HOM05D003291 ORTHO05D003923 9.3e-64 247.3 159 75.5
C09p34640 Brassica napus HOM05D003291 ORTHO05D003923 9.3e-64 247.3 157 77.1
BolC2t10163H Brassica oleracea HOM05D003291 ORTHO05D003923 9.3e-64 247.3 159 75.5
BolC9t56309H Brassica oleracea HOM05D003291 ORTHO05D003923 9.3e-64 247.3 157 77.1
BraA02t07596Z Brassica rapa HOM05D003291 ORTHO05D003923 9.3e-64 247.3 159 75.5
BraA09t38297Z Brassica rapa HOM05D003291 ORTHO05D003923 1.2e-63 246.9 159 75.5
A03p53920 Brassica napus HOM05D003291 ORTHO05D003923 1.6e-63 246.5 153 77.8
BraA03t14461Z Brassica rapa HOM05D003291 ORTHO05D003923 1.6e-63 246.5 153 77.8
SalBow4G1770 Salvia bowleyana HOM05D003291 ORTHO05D003923 2.1e-63 246.1 153 77.1
SGA_v2.0_scaffold458G51940 Striga asiatica HOM05D003291 ORTHO05D003923 2.1e-63 246.1 153 77.8
THA.LOC104814278 Tarenaya hassleriana HOM05D003291 ORTHO05D003923 2.1e-63 246.1 153 77.1
Actinidia38048 Actinidia chinensis HOM05D003291 ORTHO05D003923 3.5e-63 245.4 161 74.5
MBI03_g45559_MAGBIO Magnolia biondii HOM05D003291 ORTHO05D003923 3.5e-63 245.4 152 77.0
Nn5g30207 Nelumbo nucifera HOM05D003291 ORTHO05D003923 6.0e-63 244.6 153 79.1
Lj4C776G1 Lonicera japonica HOM05D003291 ORTHO05D003923 7.9e-63 244.2 146 78.8
THA.LOC104806367 Tarenaya hassleriana HOM05D003291 ORTHO05D003923 7.9e-63 244.2 155 76.8
C07p52330 Brassica napus HOM05D003291 ORTHO05D003923 1.0e-62 243.8 153 77.1
BolC7t45726H Brassica oleracea HOM05D003291 ORTHO05D003923 1.0e-62 243.8 153 77.1
Thhalv10024304m.g Eutrema salsugineum HOM05D003291 ORTHO05D003923 1.0e-62 243.8 153 76.5
THA.LOC104813013 Tarenaya hassleriana HOM05D003291 ORTHO05D003923 1.0e-62 243.8 153 79.1
AL7G30520 Arabidopsis lyrata HOM05D003291 ORTHO05D003923 1.3e-62 243.4 154 76.6
Aqoxy5G01279 Aquilegia oxysepala HOM05D003291 ORTHO05D003923 1.8e-62 243.0 154 74.0
Carub.0007s1827 Capsella rubella HOM05D003291 ORTHO05D003923 3.0e-62 242.3 154 76.0
Gohir.A06G016600 Gossypium hirsutum HOM05D003291 ORTHO05D003923 8.7e-62 240.7 168 72.0
Cc10_g04020 Coffea canephora HOM05D003291 ORTHO05D003923 1.1e-61 240.4 157 75.8
Gohir.D06G014700 Gossypium hirsutum HOM05D003291 ORTHO05D003923 1.1e-61 240.4 168 72.0
DCAR_023940 Daucus carota HOM05D003291 ORTHO05D003923 1.5e-61 240.0 166 69.9
CARHR230060 Cardamine hirsuta HOM05D003291 ORTHO05D003923 1.9e-61 239.6 152 77.0
CARHR254510 Cardamine hirsuta HOM05D003291 ORTHO05D003923 2.5e-61 239.2 172 70.3
Sabra14G0024400 Salix brachista HOM05D003291 ORTHO05D003923 5.6e-61 238.0 141 79.4
Sp7g21090 Schrenkiella parvula HOM05D003291 ORTHO05D003923 7.4e-61 237.7 154 76.0
SGA_v2.0_scaffold208G42005 Striga asiatica HOM05D003291 ORTHO05D003923 7.4e-61 237.7 144 79.9
Os07g0134500 Oryza sativa ssp. japonica HOM05D003291 ORTHO05D003923 1.3e-60 236.9 162 73.5
Gorai.010G017500 Gossypium raimondii HOM05D003291 ORTHO05D003923 4.8e-60 235.0 168 70.8
MD08G1106100 Malus domestica HOM05D003291 ORTHO05D003923 6.2e-60 234.6 154 75.3
Oeu006153.2 Olea europaea HOM05D003291 ORTHO05D003923 6.2e-60 234.6 138 81.2
HPP92_016679 Vanilla planifolia HOM05D003291 ORTHO05D003923 9.0e-59 230.7 161 68.9
Haze_17560 Corylus avellana HOM05D003291 ORTHO05D003923 2.0e-58 229.6 155 68.4
HanXRQChr09g0267981 Helianthus annuus HOM05D003291 ORTHO05D003923 2.0e-58 229.6 155 72.9
HanXRQChr09g0267941 Helianthus annuus HOM05D003291 ORTHO05D003923 1.9e-56 223.0 180 65.6
unitig_578.g16531 Utricularia gibba HOM05D003291 ORTHO05D003923 9.3e-56 220.7 142 75.4
AagrBONN_evm.TU.Sc2ySwM_368.1909 Anthoceros agrestis HOM05D003291 ORTHO05D003923 1.6e-55 219.9 154 70.1
Eucgr.B02927 Eucalyptus grandis HOM05D003291 ORTHO05D003923 4.6e-55 218.4 162 66.0
Cfa018515 Carpinus fangiana HOM05D003291 ORTHO05D003923 6.0e-55 218.0 155 66.5
CiPaw.16G047500 Carya illinoinensis HOM05D003291 ORTHO05D003923 1.0e-54 217.2 157 66.9
QL02p005735 Quercus lobata HOM05D003291 ORTHO05D003923 1.0e-54 217.2 154 66.2
SEGI_03228 Sequoiadendron giganteum HOM05D003291 ORTHO05D003923 1.9e-53 213.0 150 66.0
Pp3c5_1910 Physcomitrium patens HOM05D003291 ORTHO05D003923 1.3e-52 210.3 159 64.2
BcaB05g23806 Brassica carinata HOM05D003291 ORTHO05D003923 3.1e-51 205.7 123 82.1
Mapoly0020s0063 Marchantia polymorpha HOM05D003291 ORTHO05D003923 3.1e-51 205.7 162 62.3
SMO358G0100 Selaginella moellendorffii HOM05D003291 ORTHO05D003923 9.0e-51 204.1 152 65.1
Eucgr.L01670 Eucalyptus grandis HOM05D003291 ORTHO05D003923 1.2e-50 203.8 161 63.4
Pp3c1_37890 Physcomitrium patens HOM05D003291 ORTHO05D003923 5.0e-49 198.4 153 61.4
Haze_17561 Corylus avellana HOM05D003291 ORTHO05D003923 1.2e-47 193.7 152 63.2
Nn1g05846 Nelumbo nucifera HOM05D003291 ORTHO05D003923 2.2e-44 183.0 163 63.2
CBR_g765 Chara braunii HOM05D003291 ORTHO05D003923 4.8e-44 181.8 155 58.1
MBI03_g35290_MAGBIO Magnolia biondii HOM05D003291 ORTHO05D003923 1.0e-41 174.1 104 76.0
Actinidia27514 Actinidia chinensis HOM05D003291 ORTHO05D003923 3.6e-31 139.0 76 88.2
Cre03.g150800 Chlamydomonas reinhardtii HOM05D003291 ORTHO05D003923 2.9e-25 119.4 136 43.4
Actinidia22611 Actinidia chinensis HOM05D003291 ORTHO05D003923 3.6e-23 112.5 77 66.2
PSO170G2235 Papaver somniferum HOM05D003291 ORTHO05D003923 9.4e-16 87.8 65 55.4
CiPaw.16G047400 Carya illinoinensis HOM05D003291 ORTHO05D003923 6.3e-12 75.1 69 50.7
CiPaw.16G046700 Carya illinoinensis HOM05D003291 ORTHO05D003923 6.8e-06 55.1 56 51.8


User provided reference genes

Program Settings