Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 3.8e-64 248.1 128 100.0
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 6.9e-42 174.1 105 86.7
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 2.3e-21 105.9 89 64.0
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 4.4e-20 101.7 97 55.7
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 4.8e-19 98.2 106 50.9
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 8.2e-19 97.4 90 60.0
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 3.1e-18 95.5 97 53.6
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 4.1e-18 95.1 106 50.0
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 5.3e-18 94.7 101 51.5
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 7.0e-18 94.4 87 57.5
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 7.0e-18 94.4 106 49.1
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 9.1e-18 94.0 84 60.7
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 1.2e-17 93.6 106 49.1
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 1.6e-17 93.2 101 50.5
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.0e-17 92.8 91 56.0
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.6e-17 92.4 91 56.0
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 2.6e-17 92.4 106 48.1
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 2.6e-17 92.4 91 56.0
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 4.5e-17 91.7 108 48.1
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 4.5e-17 91.7 88 54.5
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 4.5e-17 91.7 109 47.7
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 5.9e-17 91.3 101 44.6
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 5.9e-17 91.3 91 54.9
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 5.9e-17 91.3 91 54.9
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 5.9e-17 91.3 94 52.1
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 7.7e-17 90.9 106 48.1
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 7.7e-17 90.9 106 47.2
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 7.7e-17 90.9 83 57.8
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 1.0e-16 90.5 102 50.0
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 1.3e-16 90.1 94 50.0
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 1.7e-16 89.7 88 54.5
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 1.7e-16 89.7 79 62.0
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 2.2e-16 89.4 99 49.5
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 5.0e-16 88.2 88 52.3
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 1.5e-15 86.7 100 47.0
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 1.5e-15 86.7 83 51.8
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 1.9e-15 86.3 86 53.5
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 1.9e-15 86.3 88 53.4
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 3.2e-15 85.5 82 54.9
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 7.2e-15 84.3 88 54.5
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 7.2e-15 84.3 83 55.4
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 7.2e-15 84.3 96 43.8
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 9.4e-15 84.0 106 46.2
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 9.4e-15 84.0 105 44.8
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 1.2e-14 83.6 88 56.8
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 1.2e-14 83.6 86 51.2
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 1.2e-14 83.6 106 48.1
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 1.6e-14 83.2 106 43.4
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 1.6e-14 83.2 108 43.5
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 1.6e-14 83.2 95 49.5
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 2.1e-14 82.8 86 51.2
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 2.1e-14 82.8 86 51.2
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 2.1e-14 82.8 93 49.5
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 2.1e-14 82.8 84 53.6
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 2.7e-14 82.4 88 48.9
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 2.7e-14 82.4 97 46.4
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 4.7e-14 81.6 95 46.3
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 6.1e-14 81.3 86 51.2
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 6.1e-14 81.3 101 46.5
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 8.0e-14 80.9 93 47.3
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 8.0e-14 80.9 86 51.2
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 1.8e-13 79.7 86 50.0
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 2.3e-13 79.3 86 50.0
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 3.0e-13 79.0 83 51.8
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 3.0e-13 79.0 86 50.0
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 6.8e-13 77.8 85 45.9
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 6.8e-13 77.8 85 45.9
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 8.8e-13 77.4 86 50.0
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 1.5e-12 76.6 107 43.0
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.0e-12 76.3 92 52.2
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 1.3e-11 73.6 89 44.9
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 1.7e-11 73.2 99 41.4
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 1.7e-11 73.2 103 39.8
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 4.8e-11 71.6 83 51.8
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 4.8e-11 71.6 80 50.0
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 6.3e-11 71.2 91 48.4
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 1.4e-10 70.1 88 48.9
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 2.7e-09 65.9 93 37.6
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 4.5e-09 65.1 72 50.0
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 7.7e-09 64.3 100 40.0
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 1.0e-08 63.9 80 46.2
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 2.2e-08 62.8 78 48.7
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 3.8e-08 62.0 79 46.8
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 9.4e-07 57.4 87 37.9
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 1.2e-06 57.0 82 41.5


User provided reference genes

Program Settings