Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0006670 Simmondsia chinensis HOM05D000499 ORTHO05D388238 2.5e-59 231.9 115 100.0
Sc02g0006640 Simmondsia chinensis HOM05D000499 ORTHO05D007471 6.7e-20 100.9 58 86.2
TWI36G1262 Tripterygium wilfordii HOM05D000499 ORTHO05D007471 8.2e-18 94.0 58 79.3
TWI12G0811 Tripterygium wilfordii HOM05D000499 ORTHO05D007471 2.4e-17 92.4 58 79.3
EL10Ac1g01746 Beta vulgaris HOM05D000499 ORTHO05D007471 3.1e-17 92.0 58 81.0
Dinv36028 Davidia involucrata HOM05D000499 ORTHO05D007471 5.3e-17 91.3 58 79.3
HanXRQChr09g0268401 Helianthus annuus HOM05D000499 ORTHO05D007471 6.9e-17 90.9 58 77.6
Eucgr.F04207 Eucalyptus grandis HOM05D000499 ORTHO05D007471 1.2e-16 90.1 58 75.9
Oeu004672.1 Olea europaea HOM05D000499 ORTHO05D007471 1.5e-16 89.7 58 75.9
vmacro21599 Vaccinium macrocarpon HOM05D000499 ORTHO05D007471 1.5e-16 89.7 58 75.9
Haze_17612 Corylus avellana HOM05D000499 ORTHO05D007471 2.0e-16 89.4 58 75.9
HanXRQChr09g0262371 Helianthus annuus HOM05D000499 ORTHO05D007471 2.0e-16 89.4 56 80.4
CiPaw.15G071000 Carya illinoinensis HOM05D000499 ORTHO05D007471 2.6e-16 89.0 58 75.9
CiPaw.05G060300 Carya illinoinensis HOM05D000499 ORTHO05D007471 3.4e-16 88.6 58 72.4
Prupe.2G023300 Prunus persica HOM05D000499 ORTHO05D007471 3.4e-16 88.6 58 75.9
Solyc04g079770.3 Solanum lycopersicum HOM05D000499 ORTHO05D007471 3.4e-16 88.6 58 79.3
Sopen04g033350 Solanum pennellii HOM05D000499 ORTHO05D007471 3.4e-16 88.6 58 79.3
PGSC0003DMG400016885 Solanum tuberosum HOM05D000499 ORTHO05D007471 3.4e-16 88.6 58 79.3
Cfa018454 Carpinus fangiana HOM05D000499 ORTHO05D007471 4.5e-16 88.2 58 74.1
Lj4A47T76 Lonicera japonica HOM05D000499 ORTHO05D007471 4.5e-16 88.2 58 77.6
Actinidia15289 Actinidia chinensis HOM05D000499 ORTHO05D007471 5.9e-16 87.8 58 75.9
CAN.G371.117 Capsicum annuum HOM05D000499 ORTHO05D007471 5.9e-16 87.8 58 77.6
SalBow8G5466 Salvia bowleyana HOM05D000499 ORTHO05D007471 5.9e-16 87.8 58 77.6
TAR376G0340 Trochodendron aralioides HOM05D000499 ORTHO05D007471 5.9e-16 87.8 58 74.1
Sp6g13080 Schrenkiella parvula HOM05D000499 ORTHO05D007471 7.7e-16 87.4 58 75.9
C09p39260 Brassica napus HOM05D000499 ORTHO05D007471 1.0e-15 87.0 58 75.9
BolC9t56805H Brassica oleracea HOM05D000499 ORTHO05D007471 1.0e-15 87.0 58 75.9
BraSC35t45995Z Brassica rapa HOM05D005048 ORTHO05D006420 1.0e-15 87.0 58 75.9
Ciclev10003605m.g Citrus clementina HOM05D000499 ORTHO05D007471 1.0e-15 87.0 58 74.1
ECA232G3898 Erigeron canadensis HOM05D000499 ORTHO05D007471 1.0e-15 87.0 58 75.9
MD02G1301200 Malus domestica HOM05D000499 ORTHO05D007471 1.0e-15 87.0 58 74.1
MD07G1022800 Malus domestica HOM05D000499 ORTHO05D007471 1.0e-15 87.0 58 74.1
Nitab4.5_0009288g0030 Nicotiana tabacum HOM05D000499 ORTHO05D007471 1.0e-15 87.0 58 77.6
Oeu015605.2 Olea europaea HOM05D000499 ORTHO05D007471 1.0e-15 87.0 58 77.6
Peaxi162Scf00280g00811 Petunia axillaris HOM05D000499 ORTHO05D007471 1.0e-15 87.0 58 77.6
Peaxi162Scf01064g00263 Petunia axillaris HOM05D000499 ORTHO05D007471 1.0e-15 87.0 58 77.6
AUR62033863 Chenopodium quinoa HOM05D000499 ORTHO05D007471 1.3e-15 86.7 58 77.6
AUR62040075 Chenopodium quinoa HOM05D000499 ORTHO05D007471 1.3e-15 86.7 58 77.6
Nitab4.5_0000110g0060 Nicotiana tabacum HOM05D000499 ORTHO05D007471 1.3e-15 86.7 58 75.9
Hund12053 Selenicereus undatus HOM05D000499 ORTHO05D007471 1.3e-15 86.7 58 77.6
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 1.3e-15 86.7 58 74.1
MSTRG.22285 Avicennia marina HOM05D000499 ORTHO05D007471 1.7e-15 86.3 58 75.9
FAN01G0570 Fragaria x ananassa HOM05D000499 ORTHO05D007471 1.7e-15 86.3 58 74.1
Thhalv10013482m.g Eutrema salsugineum HOM05D000499 ORTHO05D007471 2.2e-15 85.9 58 75.9
TAR381G1236 Trochodendron aralioides HOM05D000499 ORTHO05D007471 2.2e-15 85.9 58 74.1
AL8G18540 Arabidopsis lyrata HOM05D000499 ORTHO05D007471 2.9e-15 85.5 58 74.1
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 2.9e-15 85.5 58 74.1
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 2.9e-15 85.5 58 75.9
Glyma.17G247200 Glycine max HOM05D000499 ORTHO05D007471 2.9e-15 85.5 58 74.1
RcHm_v2.0_Chr1g0318301 Rosa chinensis HOM05D000499 ORTHO05D007471 2.9e-15 85.5 58 74.1
Thecc.08G020400 Theobroma cacao HOM05D000499 ORTHO05D007471 2.9e-15 85.5 58 74.1
VMungo0647G0317 Vigna mungo HOM05D000499 ORTHO05D007471 2.9e-15 85.5 58 74.1
AT5G42660 Arabidopsis thaliana HOM05D000499 ORTHO05D007471 3.8e-15 85.1 58 72.4
arahy.Tifrunner.gnm1.ann1.LS1NQA Arachis hypogaea HOM05D000499 ORTHO05D007471 3.8e-15 85.1 58 74.1
arahy.Tifrunner.gnm1.ann1.UQWD9J Arachis hypogaea HOM05D000499 ORTHO05D007471 3.8e-15 85.1 58 74.1
Carub.0008s0636 Capsella rubella HOM05D000499 ORTHO05D007471 3.8e-15 85.1 58 74.1
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 3.8e-15 85.1 58 75.9
FAN10G3758 Fragaria x ananassa HOM05D000499 ORTHO05D007471 3.8e-15 85.1 58 74.1
PGR083G1137 Punica granatum HOM05D000499 ORTHO05D007471 3.8e-15 85.1 58 72.4
Duzib147G0278 Durio zibethinus HOM05D000499 ORTHO05D007471 5.0e-15 84.7 58 72.4
FvH4_7g01740 Fragaria vesca HOM05D000499 ORTHO05D007471 5.0e-15 84.7 58 72.4
FAN06G3702 Fragaria x ananassa HOM05D000499 ORTHO05D007471 5.0e-15 84.7 58 72.4
Ah.07g208480 Amaranthus hybridus HOM05D000499 ORTHO05D007471 6.5e-15 84.3 58 74.1
MSTRG.9895 Avicennia marina HOM05D000499 ORTHO05D007471 6.5e-15 84.3 58 74.1
A10p08040 Brassica napus HOM05D005048 ORTHO05D006420 6.5e-15 84.3 58 74.1
Duzib187G1353 Durio zibethinus HOM05D000499 ORTHO05D007471 6.5e-15 84.3 58 72.4
Lj5g0012472 Lotus japonicus HOM05D000499 ORTHO05D007471 6.5e-15 84.3 58 72.4
RcHm_v2.0_Chr4g0418501 Rosa chinensis HOM05D000499 ORTHO05D007471 6.5e-15 84.3 58 72.4
Zm00001eb213920 Zea mays HOM05D000499 ORTHO05D007471 6.5e-15 84.3 58 70.7
CSS0041102 Camellia sinensis var. sinensis HOM05D000499 ORTHO05D007471 8.5e-15 84.0 58 72.4
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 8.5e-15 84.0 58 72.4
Ca_13326_v3 Cicer arietinum L. HOM05D000499 ORTHO05D007471 8.5e-15 84.0 58 72.4
Haze_02428 Corylus avellana HOM05D000499 ORTHO05D007471 8.5e-15 84.0 58 69.0
Hma1.2p1_0584F.1_g183470 Hydrangea macrophylla HOM05D000499 ORTHO05D007471 8.5e-15 84.0 61 70.5
CDE01G0176 Ceratophyllum demersum HOM05D000499 ORTHO05D007471 1.1e-14 83.6 58 69.0
MELO3C003891.2 Cucumis melo HOM05D000499 ORTHO05D007471 1.1e-14 83.6 58 74.1
FAN03G3351 Fragaria x ananassa HOM05D000499 ORTHO05D007471 1.1e-14 83.6 58 72.4
Glyma.14G078200 Glycine max HOM05D000499 ORTHO05D007471 1.1e-14 83.6 58 72.4
THA.LOC104803394 Tarenaya hassleriana HOM05D000499 ORTHO05D007471 1.1e-14 83.6 58 72.4
Aa31LG9G12730 Aethionema arabicum HOM05D000499 ORTHO05D007471 1.4e-14 83.2 58 70.7
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 1.4e-14 83.2 58 72.4
Atru.chr13.570 Acer truncatum HOM05D000499 ORTHO05D007471 1.9e-14 82.8 58 72.4
C03p19360 Brassica napus HOM05D000499 ORTHO05D007471 1.9e-14 82.8 58 72.4
BolC3t14322H Brassica oleracea HOM05D000499 ORTHO05D007471 1.9e-14 82.8 58 72.4
Lsat_1_v5_gn_4_123041 Lactuca sativa HOM05D000499 ORTHO05D007471 1.9e-14 82.8 58 74.1
Medtr1g021670 Medicago truncatula HOM05D000499 ORTHO05D007471 1.9e-14 82.8 66 68.2
PSO541G2319 Papaver somniferum HOM05D000499 ORTHO05D007471 1.9e-14 82.8 58 69.0
PSO675G5635 Papaver somniferum HOM05D000499 ORTHO05D007471 1.9e-14 82.8 58 69.0
Psat6g010720 Pisum sativum HOM05D000499 ORTHO05D007471 1.9e-14 82.8 58 72.4
QL02p007186 Quercus lobata HOM05D000499 ORTHO05D007471 1.9e-14 82.8 58 72.4
SGA_v2.0_scaffold14G07051 Striga asiatica HOM05D000499 ORTHO05D007471 1.9e-14 82.8 58 74.1
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.9e-14 82.8 58 74.1
CANSAT56G4116 Cannabis sativa HOM05D000499 ORTHO05D007471 2.5e-14 82.4 58 70.7
Os03g0769050 Oryza sativa ssp. japonica HOM05D000499 ORTHO05D007471 2.5e-14 82.4 58 67.2
Aqoxy2G03993 Aquilegia oxysepala HOM05D000499 ORTHO05D007471 3.2e-14 82.0 58 70.7
arahy.Tifrunner.gnm1.ann1.HC27T5 Arachis hypogaea HOM05D000499 ORTHO05D007471 3.2e-14 82.0 58 72.4
ClCG05G019250 Citrullus lanatus HOM05D000499 ORTHO05D007471 3.2e-14 82.0 58 72.4
MBI16_g13161_MAGBIO Magnolia biondii HOM05D000499 ORTHO05D007471 3.2e-14 82.0 58 69.0
Potri.002G149900 Populus trichocarpa HOM05D000499 ORTHO05D007471 3.2e-14 82.0 58 74.1
Sabra02G0118600 Salix brachista HOM05D000499 ORTHO05D007471 3.2e-14 82.0 58 74.1
A03p16470 Brassica napus HOM05D000499 ORTHO05D007471 4.2e-14 81.6 58 70.7
BraA03t10936Z Brassica rapa HOM05D000499 ORTHO05D007471 4.2e-14 81.6 58 70.7
Cfa004969 Carpinus fangiana HOM05D000499 ORTHO05D007471 5.5e-14 81.3 58 67.2
HanXRQChr16g0507941 Helianthus annuus HOM05D000499 ORTHO05D007471 5.5e-14 81.3 58 70.7
Nn5g29461 Nelumbo nucifera HOM05D000499 ORTHO05D007471 5.5e-14 81.3 58 70.7
Phvul.001G017600 Phaseolus vulgaris HOM05D000499 ORTHO05D007471 5.5e-14 81.3 58 70.7
DCAR_019495 Daucus carota HOM05D003114 ORTHO05D003519 7.2e-14 80.9 58 67.2
Gohir.A06G012900 Gossypium hirsutum HOM05D000499 ORTHO05D007471 7.2e-14 80.9 58 72.4
Gohir.D06G010400 Gossypium hirsutum HOM05D000499 ORTHO05D007471 7.2e-14 80.9 58 72.4
Gorai.010G013300 Gossypium raimondii HOM05D000499 ORTHO05D007471 7.2e-14 80.9 58 72.4
arahy.Tifrunner.gnm1.ann1.527VTZ Arachis hypogaea HOM05D000499 ORTHO05D007471 1.2e-13 80.1 58 70.7
Sed0006245 Sechium edule HOM05D000499 ORTHO05D007471 1.0e-12 77.0 58 69.0
Duzib132G0069 Durio zibethinus HOM05D000499 ORTHO05D007471 1.4e-12 76.6 58 63.8
Manes.05G164700 Manihot esculenta HOM05D000499 ORTHO05D007471 1.4e-12 76.6 58 65.5
Lalb_Chr22g0355361 Lupinus albus HOM05D000499 ORTHO05D007471 1.8e-12 76.3 58 63.8
Os01g0749100 Oryza sativa ssp. japonica HOM05D000499 ORTHO05D007471 2.3e-12 75.9 81 49.4
Nn1g03995 Nelumbo nucifera HOM05D000499 ORTHO05D007471 5.1e-12 74.7 61 63.9
ATR0733G207 Amborella trichopoda HOM05D000499 ORTHO05D007471 6.7e-12 74.3 58 63.8
Zm00001eb153240 Zea mays HOM05D000499 ORTHO05D007471 6.7e-12 74.3 81 48.1
SEGI_01316 Sequoiadendron giganteum HOM05D000499 ORTHO05D007471 1.1e-11 73.6 58 63.8
SEGI_20351 Sequoiadendron giganteum HOM05D000499 ORTHO05D007471 1.1e-11 73.6 58 63.8
BcaC01g06051 Brassica carinata HOM05D000499 ORTHO05D007471 4.3e-11 71.6 50 72.0
CDE02G3431 Ceratophyllum demersum HOM05D000370 ORTHO05D001335 1.7e-10 69.7 51 66.7
SHI18077 Sapria himalayana HOM05D000499 ORTHO05D007471 4.1e-09 65.1 58 55.2
SMO351G0006 Selaginella moellendorffii HOM05D000499 ORTHO05D007471 1.5e-08 63.2 58 55.2
Pp3c14_23720 Physcomitrium patens HOM05D000499 ORTHO05D007471 7.7e-08 60.8 58 51.7
Mapoly0024s0007 Marchantia polymorpha HOM05D000499 ORTHO05D007471 2.9e-07 58.9 58 48.3


User provided reference genes

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