Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1505.3 762 100.0
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1243.0 759 82.6
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1240.7 755 82.8
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1228.0 759 81.6
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1228.0 761 81.2
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1227.6 758 80.9
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1225.3 760 82.1
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1225.3 760 82.1
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1224.9 757 81.0
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1224.5 758 81.5
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1223.0 758 80.6
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1223.0 741 82.7
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1220.7 758 81.4
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1220.3 758 79.8
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1219.9 760 81.8
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1219.1 757 81.6
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1217.2 755 81.1
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1216.8 757 81.1
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1216.1 758 80.3
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1216.1 759 80.8
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1215.3 758 80.9
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1212.2 758 80.3
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1210.7 784 79.1
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1210.7 768 79.9
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1209.1 759 80.4
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1207.2 757 80.2
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1204.5 758 79.9
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1204.1 734 82.8
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1202.6 759 80.2
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1198.3 759 79.8
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1197.6 759 79.1
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1196.8 759 80.2
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1196.0 759 79.6
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1195.3 754 79.6
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1195.3 754 80.2
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1194.5 762 79.3
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1194.1 756 80.0
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1194.1 741 81.1
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1193.3 759 80.1
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1193.3 757 79.7
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1192.6 756 79.4
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1192.2 759 79.4
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1191.8 792 72.9
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1190.6 757 79.3
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1190.3 759 79.3
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1188.3 757 79.0
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1187.6 752 79.5
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1186.4 759 78.5
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1185.6 756 79.4
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1184.5 750 78.9
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1184.1 757 78.7
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1184.1 757 79.3
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1183.3 757 79.0
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1182.5 753 78.9
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1182.2 759 79.1
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1181.8 757 78.7
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1181.0 757 79.0
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1179.5 758 78.9
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1178.3 722 81.2
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1176.8 757 78.9
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1176.0 759 78.5
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1175.2 753 79.2
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1175.2 753 79.2
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1175.2 753 79.2
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1175.2 758 79.0
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1172.9 724 81.1
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1172.9 754 78.0
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1171.8 758 79.4
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1171.0 753 78.9
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1171.0 757 77.9
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1169.5 755 78.7
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1169.1 726 82.0
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1168.7 758 77.6
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1168.7 789 76.0
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1168.7 758 78.2
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1167.9 733 79.9
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1166.0 747 78.0
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1165.2 757 78.2
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1164.4 756 78.2
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1164.1 733 79.8
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1163.7 757 77.7
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1162.5 734 79.3
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1161.7 761 77.8
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1161.4 757 78.1
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1159.8 734 79.4
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1158.7 757 77.9
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1157.9 723 80.1
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1154.8 754 77.3
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1153.3 760 77.9
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1151.7 760 77.8
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1151.7 757 77.7
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1150.2 757 76.9
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1149.8 730 79.2
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1149.0 754 76.8
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1149.0 754 76.8
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1149.0 754 76.8
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1149.0 754 76.8
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1149.0 754 77.1
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1148.7 753 77.4
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1148.7 753 78.4
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1147.9 754 76.9
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1147.1 763 76.9
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1144.4 758 77.0
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1144.0 773 75.9
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1143.3 754 77.3
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1142.5 755 76.8
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1142.1 758 76.5
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1140.2 757 75.4
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1139.8 759 75.5
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1135.6 778 75.3
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1134.4 757 75.8
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1131.7 767 75.6
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1127.9 750 76.7
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1126.3 758 75.9
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1124.4 759 76.9
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1122.1 802 71.4
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1118.6 796 73.4
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1117.1 747 74.8
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1115.5 727 76.8
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1114.8 766 75.5
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1114.4 755 75.4
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1112.4 758 75.6
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1111.7 758 74.7
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1108.2 768 69.7
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1108.2 732 76.1
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1106.3 766 71.9
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1103.6 758 74.3
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1102.8 753 74.9
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1085.1 760 74.1
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1080.9 797 70.8
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1078.9 757 74.5
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 6.7e-310 1067.0 755 71.4
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 1.5e-309 1065.8 633 83.6
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 5.7e-309 1063.9 756 72.4
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 1.3e-308 1062.8 755 72.8
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 2.6e-306 1055.0 825 67.6
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 5.9e-306 1053.9 757 72.9
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 8.0e-303 1043.5 730 72.7
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.1e-299 1033.1 733 72.6
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 2.0e-298 1028.9 756 72.6
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 3.6e-295 1018.1 810 68.0
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 1.5e-288 996.1 669 76.5
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 2.6e-269 932.2 592 74.0
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 1.9e-264 916.0 571 76.4
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 8.6e-249 864.0 582 72.3
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 2.8e-247 859.0 507 81.5
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 1.8e-225 786.6 477 83.6
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 7.4e-224 781.2 758 59.9
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.0e-169 601.3 710 51.3
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 2.9e-143 513.5 443 59.1
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 8.4e-127 458.8 304 74.3
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.3e-106 391.7 292 74.3
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.8e-98 363.2 397 52.4
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 2.3e-92 344.4 265 66.0
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.3e-90 338.6 581 45.4
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 4.1e-81 307.0 259 70.7
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 8.8e-60 236.1 155 77.4
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 6.1e-45 186.8 163 58.9
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 1.8e-36 158.7 477 28.7
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 3.9e-31 141.0 461 27.8
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.5e-30 139.0 457 27.6
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 2.8e-29 134.8 76 80.3
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 1.8e-28 132.1 73 83.6
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.2e-27 129.4 434 27.9
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 7.5e-27 126.7 472 28.4
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.4e-25 121.7 96 65.6
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 4.6e-24 117.5 68 80.9
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.4e-17 94.0 105 51.4
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-15 89.4 216 32.4
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-15 88.2 217 29.5
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 6.2e-13 80.5 77 50.6
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 8.1e-13 80.1 152 36.2
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-08 64.3 70 45.7
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 3.0e-07 61.6 118 33.9
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 5.6e-06 57.4 38 73.7


User provided reference genes

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