Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0006480 Simmondsia chinensis HOM05D000252 ORTHO05D006173 7.7e-49 196.8 99 100.0
Sc02g0006460 Simmondsia chinensis HOM05D000252 ORTHO05D006173 2.5e-47 191.8 99 98.0
Sc02g0006450 Simmondsia chinensis HOM05D000252 ORTHO05D006173 3.2e-47 191.4 99 97.0
GSVIVG01035561001 Vitis vinifera HOM05D000252 ORTHO05D006173 4.6e-25 117.9 91 69.2
TWI81G1050 Tripterygium wilfordii HOM05D000252 ORTHO05D006173 3.0e-24 115.2 89 65.2
Thecc.04G309700 Theobroma cacao HOM05D000252 ORTHO05D006173 6.6e-24 114.0 90 65.6
Ciclev10001762m.g Citrus clementina HOM05D000252 ORTHO05D006173 1.5e-23 112.8 90 62.2
MD15G1141600 Malus domestica HOM05D000252 ORTHO05D006173 2.5e-23 112.1 87 66.7
AUR62029802 Chenopodium quinoa HOM05D000252 ORTHO05D006173 5.6e-23 110.9 82 64.6
Manes.01G013300 Manihot esculenta HOM05D000252 ORTHO05D006173 5.6e-23 110.9 85 68.2
CSS0014928 Camellia sinensis var. sinensis HOM05D000252 ORTHO05D006173 1.6e-22 109.4 89 64.0
AUR62026982 Chenopodium quinoa HOM05D000252 ORTHO05D006173 1.6e-22 109.4 82 64.6
AUR62006449 Chenopodium quinoa HOM05D000252 ORTHO05D006173 2.8e-22 108.6 82 63.4
EL10Ac7g17138 Beta vulgaris HOM05D000252 ORTHO05D006173 3.6e-22 108.2 82 63.4
PSO566G0118 Papaver somniferum HOM05D000252 ORTHO05D006173 6.2e-22 107.5 84 64.3
Prupe.8G264400 Prunus persica HOM05D000252 ORTHO05D006173 6.2e-22 107.5 87 64.4
Gorai.005G070800 Gossypium raimondii HOM05D000252 ORTHO05D006173 1.4e-21 106.3 84 63.1
Actinidia25893 Actinidia chinensis HOM05D000252 ORTHO05D006173 1.8e-21 105.9 89 60.7
TAR622G0972 Trochodendron aralioides HOM05D000252 ORTHO05D006173 1.8e-21 105.9 89 62.9
TAR629G1221 Trochodendron aralioides HOM05D000252 ORTHO05D006173 1.8e-21 105.9 89 62.9
Lj2C148T2 Lonicera japonica HOM05D000252 ORTHO05D006173 2.3e-21 105.5 84 64.3
CANSAT01G0545 Cannabis sativa HOM05D000252 ORTHO05D006173 3.1e-21 105.1 87 58.6
CiPaw.11G106500 Carya illinoinensis HOM05D000252 ORTHO05D006173 3.1e-21 105.1 89 59.6
Potri.001G453500 Populus trichocarpa HOM05D000252 ORTHO05D006173 3.1e-21 105.1 85 61.2
Gohir.D02G062900 Gossypium hirsutum HOM05D000252 ORTHO05D006173 6.8e-21 104.0 84 61.9
Solyc09g010150.4 Solanum lycopersicum HOM05D000252 ORTHO05D006173 6.8e-21 104.0 90 56.7
Cc09_g09590 Coffea canephora HOM05D000252 ORTHO05D006173 8.9e-21 103.6 89 58.4
PSO782G5386 Papaver somniferum HOM05D000252 ORTHO05D006173 1.2e-20 103.2 84 61.9
Sabra16G0306700 Salix brachista HOM05D000252 ORTHO05D006173 1.2e-20 103.2 85 61.2
Eucgr.E01120 Eucalyptus grandis HOM05D000252 ORTHO05D006173 2.0e-20 102.4 90 58.9
MBI04_g45215_MAGBIO Magnolia biondii HOM05D000252 ORTHO05D006173 2.0e-20 102.4 83 63.9
Sopen09g004890 Solanum pennellii HOM05D000252 ORTHO05D006173 2.0e-20 102.4 90 55.6
Atru.chr9.1817 Acer truncatum HOM05D000252 ORTHO05D006173 2.6e-20 102.1 88 55.7
Peaxi162Scf00069g00511 Petunia axillaris HOM05D000252 ORTHO05D006173 2.6e-20 102.1 87 58.6
Sed0023253 Sechium edule HOM05D000252 ORTHO05D006173 2.6e-20 102.1 85 61.2
Nn2g15901 Nelumbo nucifera HOM05D000252 ORTHO05D006173 3.4e-20 101.7 82 61.0
PGSC0003DMG400008940 Solanum tuberosum HOM05D000252 ORTHO05D006173 3.4e-20 101.7 87 58.6
Ah.08g209090 Amaranthus hybridus HOM05D000252 ORTHO05D006173 4.4e-20 101.3 82 59.8
Eucgr.E01111 Eucalyptus grandis HOM05D000252 ORTHO05D006173 4.4e-20 101.3 90 57.8
CAN.G397.84 Capsicum annuum HOM05D000252 ORTHO05D006173 5.8e-20 100.9 87 58.6
Peaxi162Scf01205g00153 Petunia axillaris HOM05D000252 ORTHO05D006173 7.5e-20 100.5 87 59.8
Oeu021515.1 Olea europaea HOM05D000252 ORTHO05D006173 9.8e-20 100.1 89 59.6
Nitab4.5_0000573g0180 Nicotiana tabacum HOM05D000252 ORTHO05D006173 1.7e-19 99.4 85 57.6
vmacro00029 Vaccinium macrocarpon HOM05D000252 ORTHO05D006173 1.7e-19 99.4 87 58.6
FvH4_6g28040 Fragaria vesca HOM05D000252 ORTHO05D006173 2.9e-19 98.6 94 57.4
FAN09G0108 Fragaria x ananassa HOM05D000252 ORTHO05D006173 2.9e-19 98.6 94 57.4
FAN14G4665 Fragaria x ananassa HOM05D000252 ORTHO05D006173 2.9e-19 98.6 94 57.4
Cfa010656 Carpinus fangiana HOM05D000252 ORTHO05D006173 3.7e-19 98.2 83 61.4
RcHm_v2.0_Chr2g0131741 Rosa chinensis HOM05D000252 ORTHO05D006173 4.9e-19 97.8 89 57.3
RcHm_v2.0_Chr5g0041951 Rosa chinensis HOM05D001077 ORTHO05D006173 4.9e-19 97.8 97 54.6
RcHm_v2.0_Chr6g0247031 Rosa chinensis HOM05D000252 ORTHO05D006173 6.4e-19 97.4 97 54.6
Rhsim02G0119800 Rhododendron simsii HOM05D000252 ORTHO05D006173 8.3e-19 97.1 89 57.3
ClCG01G007270 Citrullus lanatus HOM05D000252 ORTHO05D006173 1.4e-18 96.3 83 56.6
Sed0009717 Sechium edule HOM05D000252 ORTHO05D006173 3.2e-18 95.1 85 56.5
ECA246G4804 Erigeron canadensis HOM05D001361 ORTHO05D006173 5.4e-18 94.4 78 59.0
Lsat_1_v5_gn_5_112420 Lactuca sativa HOM05D000252 ORTHO05D006173 9.2e-18 93.6 83 56.6
ATR0824G073 Amborella trichopoda HOM05D000252 ORTHO05D006173 1.6e-17 92.8 83 55.4
MSTRG.14758 Avicennia marina HOM05D000252 ORTHO05D006173 1.6e-17 92.8 85 57.6
CsaV3_5G018710 Cucumis sativus L. HOM05D000252 ORTHO05D006173 1.6e-17 92.8 84 54.8
Aqoxy2G02648 Aquilegia oxysepala HOM05D000252 ORTHO05D006173 2.7e-17 92.0 79 62.0
THA.LOC104816406 Tarenaya hassleriana HOM05D000252 ORTHO05D006173 6.0e-17 90.9 87 50.6
COL.COLO4_34295 Corchorus olitorius HOM05D000252 ORTHO05D006173 7.8e-17 90.5 85 57.6
Os09g0346600 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D006173 1.3e-16 89.7 82 57.3
Cpa.g.sc87.4 Carica papaya HOM05D000252 ORTHO05D006173 1.7e-16 89.4 83 56.6
arahy.Tifrunner.gnm1.ann1.VK1FTJ Arachis hypogaea HOM05D000252 ORTHO05D006173 2.3e-16 89.0 99 52.5
Migut.H01382 Erythranthe guttata HOM05D000252 ORTHO05D006173 2.3e-16 89.0 81 58.0
Medtr3g009190 Medicago truncatula HOM05D000252 ORTHO05D006173 2.3e-16 89.0 77 61.0
VMungo1309G0630 Vigna mungo HOM05D000252 ORTHO05D006173 3.0e-16 88.6 77 58.4
arahy.Tifrunner.gnm1.ann1.32U02B Arachis hypogaea HOM05D000252 ORTHO05D006173 5.0e-16 87.8 99 51.5
arahy.Tifrunner.gnm1.ann1.6GL1RL Arachis hypogaea HOM05D000252 ORTHO05D006173 5.0e-16 87.8 99 51.5
Medtr6g453040 Medicago truncatula HOM05D000252 ORTHO05D006173 8.6e-16 87.0 77 59.7
RcHm_v2.0_Chr7g0230161 Rosa chinensis HOM05D000252 ORTHO05D006173 8.6e-16 87.0 81 58.0
Zm00001eb310490 Zea mays HOM05D000252 ORTHO05D006173 8.6e-16 87.0 90 51.1
Lj1g0001797 Lotus japonicus HOM05D000252 ORTHO05D006173 1.1e-15 86.7 77 58.4
Mapoly0004s0285 Marchantia polymorpha HOM05D000252 ORTHO05D006173 1.1e-15 86.7 77 55.8
FAN05G2628 Fragaria x ananassa HOM05D001214 ORTHO05D006173 1.5e-15 86.3 74 60.8
Thhalv10013855m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 2.5e-15 85.5 82 53.7
Phvul.009G054600 Phaseolus vulgaris HOM05D000252 ORTHO05D006173 2.5e-15 85.5 98 49.0
HPP92_005571 Vanilla planifolia HOM05D000252 ORTHO05D006173 2.5e-15 85.5 78 55.1
BcaNung02217 Brassica carinata HOM05D000252 ORTHO05D006173 3.3e-15 85.1 82 52.4
BraA02t05302Z Brassica rapa HOM05D000252 ORTHO05D006173 3.3e-15 85.1 82 52.4
Thhalv10013899m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 3.3e-15 85.1 82 52.4
RcHm_v2.0_Chr7g0229511 Rosa chinensis HOM05D000252 ORTHO05D006173 3.3e-15 85.1 81 55.6
AT5G15940 Arabidopsis thaliana HOM05D000252 ORTHO05D006173 5.6e-15 84.3 83 50.6
QL07p028735 Quercus lobata HOM05D000252 ORTHO05D006173 5.6e-15 84.3 122 42.6
AL6G26820 Arabidopsis lyrata HOM05D000252 ORTHO05D006173 7.3e-15 84.0 90 46.7
BcaNung02216 Brassica carinata HOM05D000252 ORTHO05D006173 7.3e-15 84.0 81 51.9
RcHm_v2.0_Chr7g0229671 Rosa chinensis HOM05D001214 ORTHO05D006173 7.3e-15 84.0 81 55.6
A02p03310 Brassica napus HOM05D005209 ORTHO05D006188 1.2e-14 83.2 82 51.2
C02p08070 Brassica napus HOM05D005209 ORTHO05D006188 1.2e-14 83.2 82 51.2
BolC2t06729H Brassica oleracea HOM05D005209 ORTHO05D006188 1.2e-14 83.2 82 51.2
Eucgr.L01276 Eucalyptus grandis HOM05D000252 ORTHO05D006173 1.2e-14 83.2 72 56.9
HanXRQChr06g0172631 Helianthus annuus HOM05D000252 ORTHO05D006173 1.2e-14 83.2 78 57.7
Medtr3g091070 Medicago truncatula HOM05D000252 ORTHO05D006173 1.6e-14 82.8 77 58.4
Ca_16687_v3 Cicer arietinum L. HOM05D000252 ORTHO05D006173 2.1e-14 82.4 98 48.0
FAN02G2190 Fragaria x ananassa HOM05D000479 ORTHO05D017027 2.8e-14 82.0 89 50.6
AL6G13700 Arabidopsis lyrata HOM05D000252 ORTHO05D006173 3.6e-14 81.6 82 51.2
BcaC03g18461 Brassica carinata HOM05D000252 ORTHO05D006173 3.6e-14 81.6 82 50.0
Lalb_Chr23g0271541 Lupinus albus HOM05D000252 ORTHO05D006173 3.6e-14 81.6 77 55.8
Glyma.04G237500 Glycine max HOM05D000252 ORTHO05D006173 4.7e-14 81.3 77 57.1
Sp6g28170 Schrenkiella parvula HOM05D000252 ORTHO05D006173 4.7e-14 81.3 83 49.4
Carub.0006s1413 Capsella rubella HOM05D000252 ORTHO05D006173 1.1e-13 80.1 83 47.0
FAN05G1823 Fragaria x ananassa HOM05D000479 ORTHO05D017027 1.1e-13 80.1 89 50.6
Glyma.06G126500 Glycine max HOM05D000252 ORTHO05D006173 1.1e-13 80.1 77 55.8
CBR_g24314 Chara braunii HOM05D000252 ORTHO05D006173 1.4e-13 79.7 78 50.0
Aa31LG11G13660 Aethionema arabicum HOM05D000252 ORTHO05D006173 1.8e-13 79.3 83 49.4
CARHR197370 Cardamine hirsuta HOM05D000252 ORTHO05D006173 1.8e-13 79.3 85 47.1
Thhalv10007998m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 3.1e-13 78.6 82 51.2
SEGI_02143 Sequoiadendron giganteum HOM05D000252 ORTHO05D006173 5.2e-13 77.8 76 56.6
CARHR209200 Cardamine hirsuta HOM05D000252 ORTHO05D006173 8.9e-13 77.0 82 48.8
Carub.0006s0303 Capsella rubella HOM05D000252 ORTHO05D006173 1.2e-12 76.6 82 50.0
Sc02g0006470 Simmondsia chinensis HOM05D000252 ORTHO05D006173 1.2e-12 76.6 39 97.4
unitig_61.g26060 Utricularia gibba HOM05D000252 ORTHO05D006173 2.6e-12 75.5 84 48.8
BraA10t45249Z Brassica rapa HOM05D000252 ORTHO05D006173 4.4e-12 74.7 82 47.6
C09p72770 Brassica napus HOM05D000087 ORTHO05D006949 5.8e-12 74.3 82 47.6
BolC9t60015H Brassica oleracea HOM05D000087 ORTHO05D006949 5.8e-12 74.3 82 47.6
AagrBONN_evm.TU.Sc2ySwM_228.404 Anthoceros agrestis HOM05D000252 ORTHO05D006173 9.9e-12 73.6 71 54.9
AT5G04070 Arabidopsis thaliana HOM05D000252 ORTHO05D006173 9.9e-12 73.6 82 48.8
Haze_06490 Corylus avellana HOM05D000252 ORTHO05D006173 9.9e-12 73.6 71 57.7
BcaC06g32112 Brassica carinata HOM05D000252 ORTHO05D006173 3.7e-11 71.6 82 47.6
A10p32050 Brassica napus HOM05D000087 ORTHO05D006949 4.9e-11 71.2 82 46.3
SMO259G0014 Selaginella moellendorffii HOM05D000252 ORTHO05D006173 4.9e-11 71.2 78 44.9
Pp3c26_3200 Physcomitrium patens HOM05D000252 ORTHO05D006173 6.4e-11 70.9 80 43.8
QL93p2012_0022 Quercus lobata HOM05D000252 ORTHO05D006173 3.2e-10 68.6 66 50.0
Sp6g38670 Schrenkiella parvula HOM05D000252 ORTHO05D006173 9.2e-10 67.0 82 47.6
Aa31LG1G21250 Aethionema arabicum HOM05D000252 ORTHO05D006173 1.6e-09 66.2 84 45.2
Hund17503 Selenicereus undatus HOM05D000252 ORTHO05D006173 4.3e-07 58.2 39 74.4
RcHm_v2.0_Chr7g0229791 Rosa chinensis HOM05D000252 ORTHO05D006173 7.3e-07 57.4 52 59.6
Haze_09230 Corylus avellana HOM05D000252 ORTHO05D006173 1.6e-06 56.2 39 71.8
Hma1.2p1_0064F.1_g034900 Hydrangea macrophylla HOM05D000252 ORTHO05D006173 4.7e-06 54.7 45 64.4


User provided reference genes

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