Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0006440 Simmondsia chinensis HOM05D007089 ORTHO05D008959 7.8e-269 929.9 463 100.0
Hma1.2p1_0203F.1_g086680 Hydrangea macrophylla HOM05D007089 ORTHO05D008959 7.3e-150 534.6 424 61.1
AUR62025603 Chenopodium quinoa HOM05D007089 ORTHO05D008959 2.1e-149 533.1 459 58.8
CSS0000683 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 4.0e-148 528.9 425 62.1
Manes.05G163100 Manihot esculenta HOM05D007089 ORTHO05D008959 5.4e-145 518.5 425 60.0
GSVIVG01009652001 Vitis vinifera HOM05D007089 ORTHO05D008959 7.1e-145 518.1 433 61.2
Ah.08g217460 Amaranthus hybridus HOM05D007089 ORTHO05D008959 2.3e-143 513.1 446 57.2
Atru.chr13.537 Acer truncatum HOM05D007089 ORTHO05D008959 5.1e-143 511.9 431 60.1
Cfa018438 Carpinus fangiana HOM05D007089 ORTHO05D008959 5.6e-142 508.4 423 60.0
Nn1g05102 Nelumbo nucifera HOM05D007089 ORTHO05D008959 7.3e-142 508.1 424 59.4
Aqoxy5G01701 Aquilegia oxysepala HOM05D007089 ORTHO05D008959 1.2e-141 507.3 430 57.0
Gorai.010G011900 Gossypium raimondii HOM05D007089 ORTHO05D008959 2.1e-141 506.5 424 58.7
Ciclev10001360m.g Citrus clementina HOM05D007089 ORTHO05D008959 6.2e-141 505.0 425 58.1
Lj4A43T59 Lonicera japonica HOM05D007089 ORTHO05D008959 2.4e-140 503.1 428 57.0
Oeu015592.2 Olea europaea HOM05D007089 ORTHO05D008959 2.4e-140 503.1 444 57.4
COL.COLO4_26368 Corchorus olitorius HOM05D007089 ORTHO05D008959 3.1e-140 502.7 426 58.7
Gohir.D06G009100 Gossypium hirsutum HOM05D007089 ORTHO05D008959 3.1e-140 502.7 424 58.3
Nitab4.5_0005314g0050 Nicotiana tabacum HOM05D007089 ORTHO05D008959 6.8e-140 501.5 425 58.6
Gohir.A06G011700 Gossypium hirsutum HOM05D007089 ORTHO05D008959 2.0e-139 500.0 423 58.6
Migut.N00515 Erythranthe guttata HOM05D007089 ORTHO05D008959 3.4e-139 499.2 427 57.1
MSTRG.22295 Avicennia marina HOM05D007089 ORTHO05D008959 4.4e-139 498.8 429 59.2
CiPaw.09G208600 Carya illinoinensis HOM05D007089 ORTHO05D008959 1.7e-138 496.9 421 59.4
Eucgr.F01540 Eucalyptus grandis HOM05D007089 ORTHO05D008959 2.9e-138 496.1 436 55.7
CANSAT25G1057 Cannabis sativa HOM05D007089 ORTHO05D008959 6.4e-138 495.0 432 56.5
PGR083G0581 Punica granatum HOM05D007089 ORTHO05D008959 6.4e-138 495.0 426 58.0
PSO700G0257 Papaver somniferum HOM05D007089 ORTHO05D008959 4.2e-137 492.3 436 58.5
Prupe.1G383100 Prunus persica HOM05D007089 ORTHO05D008959 4.6e-136 488.8 420 58.8
CAN.G1126.18 Capsicum annuum HOM05D007089 ORTHO05D008959 6.0e-136 488.4 424 59.0
Glyma.14G077000 Glycine max HOM05D007089 ORTHO05D008959 8.7e-135 484.6 429 57.8
PSO170G0803 Papaver somniferum HOM05D007089 ORTHO05D008959 8.7e-135 484.6 429 58.3
TPR.G15730 Trifolium pratense HOM05D007089 ORTHO05D008959 1.1e-134 484.2 428 58.2
Sopen04g033530 Solanum pennellii HOM05D007089 ORTHO05D008959 1.6e-133 480.3 424 55.7
SalBow8G1187 Salvia bowleyana HOM05D007089 ORTHO05D008959 2.8e-133 479.6 447 55.5
SalBow8G1554 Salvia bowleyana HOM05D007089 ORTHO05D008959 2.8e-133 479.6 447 55.5
PGSC0003DMG400027847 Solanum tuberosum HOM05D007089 ORTHO05D008959 2.8e-133 479.6 425 55.5
ClCG08G015310 Citrullus lanatus HOM05D007089 ORTHO05D008959 3.6e-133 479.2 427 56.0
Cc10_g03320 Coffea canephora HOM05D007089 ORTHO05D008959 8.1e-133 478.0 428 58.2
PSO832G2704 Papaver somniferum HOM05D007089 ORTHO05D008959 1.1e-132 477.6 436 57.1
Rhsim07G0236000 Rhododendron simsii HOM05D007089 ORTHO05D008959 1.1e-132 477.6 486 53.3
Ca_13340_v3 Cicer arietinum L. HOM05D007089 ORTHO05D008959 2.4e-132 476.5 440 57.5
QL02p007525 Quercus lobata HOM05D007089 ORTHO05D008959 4.0e-132 475.7 544 48.2
AL1G31930 Arabidopsis lyrata HOM05D007089 ORTHO05D008959 1.2e-131 474.2 428 56.5
FvH4_2g40230 Fragaria vesca HOM05D007089 ORTHO05D008959 1.5e-131 473.8 422 57.1
Potri.014G041400 Populus trichocarpa HOM05D007089 ORTHO05D008959 2.0e-131 473.4 424 57.3
SGA_v2.0_scaffold33G13513 Striga asiatica HOM05D007089 ORTHO05D008959 4.4e-131 472.2 440 55.2
RcHm_v2.0_Chr6g0300531 Rosa chinensis HOM05D007089 ORTHO05D008959 9.9e-131 471.1 422 55.9
Medtr1g021985 Medicago truncatula HOM05D007089 ORTHO05D008959 2.9e-130 469.5 427 55.7
THA.LOC104809053 Tarenaya hassleriana HOM05D007089 ORTHO05D008959 2.9e-130 469.5 423 57.9
FAN15G3100 Fragaria x ananassa HOM05D007089 ORTHO05D008959 8.4e-130 468.0 430 56.7
arahy.Tifrunner.gnm1.ann1.4B2PQ4 Arachis hypogaea HOM05D007089 ORTHO05D008959 1.4e-129 467.2 439 59.9
AT1G19340 Arabidopsis thaliana HOM05D007089 ORTHO05D008959 3.2e-129 466.1 426 55.2
TAR381G0661 Trochodendron aralioides HOM05D007089 ORTHO05D008959 7.1e-129 464.9 432 54.6
MD04G1062700 Malus domestica HOM05D007089 ORTHO05D008959 1.6e-128 463.8 426 57.5
Sp1g17250 Schrenkiella parvula HOM05D007089 ORTHO05D008959 2.1e-128 463.4 429 55.0
Lalb_Chr14g0369091 Lupinus albus HOM05D007089 ORTHO05D008959 2.7e-128 463.0 433 54.5
VMungo0647G2017 Vigna mungo HOM05D007089 ORTHO05D008959 2.7e-128 463.0 438 57.1
Haze_17627 Corylus avellana HOM05D007089 ORTHO05D008959 1.0e-127 461.1 423 56.0
Psat6g006920 Pisum sativum HOM05D007089 ORTHO05D008959 1.3e-127 460.7 430 56.0
A06p15500 Brassica napus HOM05D007089 ORTHO05D008959 3.9e-127 459.1 429 54.5
Aa31LG7G4040 Aethionema arabicum HOM05D007089 ORTHO05D008959 6.6e-127 458.4 428 57.5
Peaxi162Scf00057g00723 Petunia axillaris HOM05D007089 ORTHO05D008959 8.7e-127 458.0 425 56.7
BraA06t24662Z Brassica rapa HOM05D007089 ORTHO05D008959 2.5e-126 456.4 429 54.3
ATR0733G253 Amborella trichopoda HOM05D007089 ORTHO05D008959 7.4e-126 454.9 436 53.4
AUR62001387 Chenopodium quinoa HOM05D007089 ORTHO05D008959 3.6e-125 452.6 457 54.0
Solyc04g079950.4 Solanum lycopersicum HOM05D007089 ORTHO05D008959 4.8e-125 452.2 412 55.6
C05p17740 Brassica napus HOM05D007089 ORTHO05D008959 6.2e-125 451.8 426 53.8
BolC5t30479H Brassica oleracea HOM05D007089 ORTHO05D008959 8.1e-125 451.4 428 53.5
BcaB07g31960 Brassica carinata HOM05D007089 ORTHO05D008959 1.8e-124 450.3 427 54.6
HanXRQChr14g0437051 Helianthus annuus HOM05D007089 ORTHO05D008959 5.3e-124 448.7 439 55.4
Carub.0001s1893 Capsella rubella HOM05D007089 ORTHO05D008959 9.0e-124 448.0 430 53.7
vmacro04507 Vaccinium macrocarpon HOM05D007089 ORTHO05D008959 1.2e-123 447.6 436 54.4
Thhalv10007768m.g Eutrema salsugineum HOM05D007089 ORTHO05D008959 7.6e-123 444.9 429 56.2
Duzib041G0709 Durio zibethinus HOM05D007089 ORTHO05D008959 1.6e-120 437.2 425 54.1
HPP92_020401 Vanilla planifolia HOM05D007089 ORTHO05D008959 2.1e-120 436.8 423 53.4
EL10Ac7g18245 Beta vulgaris HOM05D007089 ORTHO05D008959 4.6e-120 435.6 446 51.8
Cpa.g.sc64.54 Carica papaya HOM05D007089 ORTHO05D008959 3.9e-119 432.6 325 65.2
arahy.Tifrunner.gnm1.ann1.K9WZZ6 Arachis hypogaea HOM05D007089 ORTHO05D008959 1.5e-118 430.6 439 57.2
Nitab4.5_0000110g0230 Nicotiana tabacum HOM05D007089 ORTHO05D008959 1.9e-113 413.7 382 55.0
CARHR019930 Cardamine hirsuta HOM05D007089 ORTHO05D008959 4.2e-113 412.5 335 59.4
Os03g0198900 Oryza sativa ssp. japonica HOM05D007089 ORTHO05D008959 1.1e-110 404.4 429 51.0
Sabra14G0030300 Salix brachista HOM05D007089 ORTHO05D008959 3.3e-110 402.9 379 55.4
Phvul.001G016200 Phaseolus vulgaris HOM05D007089 ORTHO05D008959 1.6e-109 400.6 396 54.3
MBI16_g26378_MAGBIO Magnolia biondii HOM05D007089 ORTHO05D008959 4.8e-109 399.1 450 49.3
DCAR_008774 Daucus carota HOM05D007089 ORTHO05D008959 1.5e-107 394.0 390 52.8
unitig_8.g3115 Utricularia gibba HOM05D007089 ORTHO05D008959 8.5e-106 388.3 410 50.0
CsaV3_2G028500 Cucumis sativus L. HOM05D007089 ORTHO05D008959 3.3e-102 376.3 342 56.7
Zm00001eb007930 Zea mays HOM05D007089 ORTHO05D008959 1.5e-99 367.5 426 47.2
Lj5g0009638 Lotus japonicus HOM05D007089 ORTHO05D008959 3.4e-99 366.3 363 57.3
Mapoly0005s0290 Marchantia polymorpha HOM05D007089 ORTHO05D008959 3.8e-98 362.8 442 46.2
SEGI_17198 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 7.2e-97 358.6 430 45.3
Lsat_1_v5_gn_5_30021 Lactuca sativa HOM05D007089 ORTHO05D008959 2.1e-96 357.1 388 49.7
ECA246G5250 Erigeron canadensis HOM05D007089 ORTHO05D008959 8.8e-95 351.7 363 50.7
CDE02G1565 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 1.3e-90 337.8 405 43.2
SEGI_08195 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 8.8e-87 325.1 354 47.7
Pp3c10_21330 Physcomitrium patens HOM05D007089 ORTHO05D008959 4.2e-81 306.2 301 48.8
FAN20G0063 Fragaria x ananassa HOM05D007089 ORTHO05D008959 8.8e-79 298.5 359 48.7
Actinidia29839 Actinidia chinensis HOM05D007089 ORTHO05D008959 3.7e-69 266.5 351 42.7
Actinidia38023 Actinidia chinensis HOM05D007089 ORTHO05D008959 4.5e-67 259.6 289 47.1
BcaNung07258 Brassica carinata HOM05D000817 ORTHO05D008959 2.0e-62 244.2 160 70.6
SMO358G0064 Selaginella moellendorffii HOM05D007089 ORTHO05D008959 1.2e-56 224.9 198 56.1
CBR_g34449 Chara braunii HOM05D007089 ORTHO05D008959 6.4e-53 212.6 391 33.0
Thecc.01G286100 Theobroma cacao HOM05D007089 ORTHO05D008959 9.2e-52 208.8 232 52.2
AagrBONN_evm.TU.Sc2ySwM_228.1009 Anthoceros agrestis HOM05D007089 ORTHO05D008959 1.5e-46 191.4 224 42.4
MELO3C010924.2 Cucumis melo HOM05D007089 ORTHO05D008959 3.7e-45 186.8 252 43.7
FAN27G0845 Fragaria x ananassa HOM05D007089 ORTHO05D008959 2.7e-27 127.5 169 46.2
Glyma.17G248801 Glycine max HOM05D007089 ORTHO05D008959 3.3e-25 120.6 82 64.6
CSS0043770 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 1.2e-22 112.1 165 38.8
Thecc.08G022600 Theobroma cacao HOM05D007089 ORTHO05D008959 1.3e-18 98.6 180 39.4
Sed0025576 Sechium edule HOM05D007089 ORTHO05D008959 3.6e-16 90.5 63 61.9
Cfa025491 Carpinus fangiana HOM05D007089 ORTHO05D008959 9.9e-14 82.4 193 32.6
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 6.0e-11 73.2 100 54.0
CDE01G0194 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 4.0e-07 60.5 46 56.5


User provided reference genes

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