Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1226.1 588 100.0
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 4.6e-282 974.2 556 81.3
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 6.6e-273 943.7 551 80.0
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 5.6e-272 940.6 554 79.8
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 2.0e-269 932.2 544 78.3
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 4.2e-267 924.5 554 77.6
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 7.1e-267 923.7 544 77.8
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 7.1e-267 923.7 556 76.3
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 6.0e-266 920.6 544 77.8
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 1.0e-265 919.8 544 77.8
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 1.7e-265 919.1 558 76.3
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 2.3e-265 918.7 556 76.1
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 1.5e-264 916.0 556 75.9
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 6.2e-263 910.6 558 76.3
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 5.3e-262 907.5 558 74.7
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 6.9e-262 907.1 558 74.7
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 3.4e-261 904.8 556 75.5
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 4.5e-261 904.4 556 75.4
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 1.7e-260 902.5 554 75.8
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 1.7e-260 902.5 559 75.8
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 8.4e-260 900.2 558 75.1
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 9.3e-259 896.7 559 71.7
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 1.2e-258 896.3 556 73.9
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 1.6e-258 896.0 557 72.9
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 3.5e-258 894.8 556 74.1
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 1.3e-257 892.9 559 72.5
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 3.0e-257 891.7 557 73.2
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 3.9e-257 891.3 556 73.9
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 3.9e-257 891.3 560 73.4
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 5.1e-257 891.0 556 74.6
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 2.5e-256 888.6 556 73.0
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 7.4e-256 887.1 544 74.8
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 1.3e-255 886.3 556 73.2
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 1.6e-255 885.9 556 73.4
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 2.1e-255 885.6 557 73.8
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 3.7e-255 884.8 559 71.9
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 1.1e-254 883.2 544 76.1
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 1.1e-254 883.2 554 72.9
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 1.4e-254 882.9 559 71.6
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 1.8e-254 882.5 558 73.1
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 2.4e-254 882.1 552 73.9
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 3.1e-254 881.7 547 72.9
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 4.0e-254 881.3 554 72.4
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 4.0e-254 881.3 561 71.7
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 4.0e-254 881.3 546 74.2
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 5.3e-254 880.9 556 73.2
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 2.6e-253 878.6 544 76.3
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 3.4e-253 878.2 558 72.4
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 5.8e-253 877.5 627 66.8
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 2.9e-252 875.2 560 72.0
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 2.9e-252 875.2 546 72.3
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 2.9e-252 875.2 558 72.6
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 4.9e-252 874.4 588 70.6
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 6.4e-252 874.0 558 71.7
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 6.4e-252 874.0 563 73.5
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 8.4e-252 873.6 557 72.2
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 1.1e-251 873.2 590 70.5
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 1.4e-251 872.8 557 73.1
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 7.1e-251 870.5 564 71.5
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 2.1e-250 869.0 547 73.7
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 2.7e-250 868.6 563 73.4
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 1.3e-249 866.3 562 72.8
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 1.8e-249 865.9 558 72.2
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 3.9e-249 864.8 579 68.7
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 3.9e-249 864.8 577 69.3
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 4.3e-248 861.3 546 73.1
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 4.8e-247 857.8 559 71.0
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 4.8e-247 857.8 563 70.0
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 1.2e-245 853.2 557 70.9
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 2.0e-245 852.4 548 71.4
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 2.6e-245 852.0 556 71.8
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 1.0e-244 850.1 548 71.9
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 3.8e-244 848.2 548 71.7
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 2.5e-243 845.5 544 70.4
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 4.2e-243 844.7 557 70.4
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 2.1e-242 842.4 558 68.8
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 1.0e-241 840.1 547 70.9
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 2.3e-241 839.0 548 71.4
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 2.3e-241 839.0 548 71.4
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 2.3e-241 839.0 548 71.4
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 6.7e-241 837.4 559 69.4
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 1.9e-240 835.9 718 59.1
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 2.2e-236 822.4 701 58.8
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 6.5e-236 820.8 502 74.1
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 6.1e-234 814.3 544 68.8
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 2.3e-233 812.4 589 67.2
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 1.3e-231 806.6 558 67.7
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 6.9e-230 800.8 544 67.3
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 2.1e-226 789.3 544 66.2
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 5.7e-224 781.2 494 73.7
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 5.5e-211 738.0 468 71.6
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 4.7e-210 734.9 483 69.4
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 1.0e-209 733.8 500 68.0
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 2.2e-199 699.5 557 58.3
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 3.1e-198 695.7 511 66.5
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 1.2e-197 693.7 557 59.8
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 7.0e-190 667.9 545 57.6
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 2.5e-171 606.3 388 75.0
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 4.9e-167 592.0 373 75.9
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 1.6e-157 560.5 565 52.4
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 1.7e-156 557.0 377 70.8
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 5.1e-140 502.3 271 81.5
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 1.0e-103 381.7 443 45.1
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 2.2e-82 310.8 740 31.8
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 3.3e-78 297.0 146 88.4
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 3.7e-66 256.9 245 55.1
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 2.0e-51 208.0 200 53.0
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 2.5e-30 137.9 61 90.2
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 6.0e-24 116.7 71 69.0
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 5.1e-23 113.6 70 68.6
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 7.4e-22 109.8 65 70.8
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.1e-20 105.9 70 64.3
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 3.4e-19 100.9 82 67.1
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 2.2e-18 98.2 94 57.4
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 1.4e-17 95.5 66 71.2
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 1.4e-17 95.5 66 71.2
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 1.4e-17 95.5 66 71.2
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 3.2e-17 94.4 64 67.2
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 4.8e-13 80.5 51 64.7
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 2.0e-11 75.1 74 50.0
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 7.6e-11 73.2 99 44.4
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 1.6e-08 65.5 126 35.7
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 2.3e-07 61.6 30 83.3
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 2.3e-07 61.6 30 83.3
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 5.7e-06 57.0 64 43.8


User provided reference genes

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