Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 1.6e-121 439.5 233 100.0
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 3.6e-65 252.3 218 62.8
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 1.2e-63 247.3 236 58.9
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 4.9e-62 241.9 241 60.6
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 1.4e-61 240.4 221 57.9
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 1.9e-61 240.0 228 59.2
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 3.2e-61 239.2 236 58.1
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 3.2e-61 239.2 245 55.5
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 9.3e-61 237.7 224 60.7
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 1.2e-60 237.3 219 61.6
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 1.2e-60 237.3 244 58.6
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 2.1e-60 236.5 243 57.6
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 2.7e-60 236.1 207 59.4
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 1.3e-59 233.8 233 57.5
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 2.3e-59 233.0 242 55.0
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 2.3e-59 233.0 233 57.5
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 3.0e-59 232.6 228 58.3
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 3.0e-59 232.6 221 56.6
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 5.1e-59 231.9 230 57.0
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 8.7e-59 231.1 225 57.3
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 8.7e-59 231.1 235 57.4
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 1.1e-58 230.7 241 57.3
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 1.9e-58 229.9 240 56.2
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 1.9e-58 229.9 240 55.0
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 1.9e-58 229.9 234 56.8
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 4.3e-58 228.8 233 56.7
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 5.6e-58 228.4 234 57.7
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 7.4e-58 228.0 232 57.3
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 7.4e-58 228.0 231 56.7
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 7.4e-58 228.0 251 53.8
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 7.4e-58 228.0 234 55.6
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 7.4e-58 228.0 230 57.4
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 1.3e-57 227.3 223 57.8
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 1.6e-57 226.9 212 59.4
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 1.6e-57 226.9 227 56.4
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 1.6e-57 226.9 232 57.3
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 1.6e-57 226.9 224 54.5
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 2.1e-57 226.5 233 54.5
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 2.1e-57 226.5 188 62.8
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 2.1e-57 226.5 238 55.9
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 6.2e-57 224.9 234 58.1
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 6.2e-57 224.9 188 62.2
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 1.1e-56 224.2 235 55.7
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 1.8e-56 223.4 233 55.8
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 1.8e-56 223.4 236 54.7
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 4.0e-56 222.2 235 55.3
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 4.0e-56 222.2 188 60.6
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 4.0e-56 222.2 190 60.5
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 4.0e-56 222.2 228 55.3
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 4.0e-56 222.2 231 54.5
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 4.0e-56 222.2 234 55.1
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 9.0e-56 221.1 203 58.6
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 9.0e-56 221.1 234 54.7
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 1.2e-55 220.7 234 55.1
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 4.5e-55 218.8 194 57.7
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 4.9e-54 215.3 203 54.2
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 8.4e-54 214.5 238 50.8
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 8.4e-54 214.5 194 61.9
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 1.9e-53 213.4 203 55.7
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 2.4e-53 213.0 224 54.5
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 3.2e-53 212.6 205 56.6
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 7.1e-53 211.5 163 64.4
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 1.2e-52 210.7 170 61.2
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 1.2e-52 210.7 242 50.8
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 1.0e-51 207.6 192 58.3
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 1.0e-51 207.6 230 53.9
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 8.7e-51 204.5 223 53.4
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 4.3e-50 202.2 204 55.9
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 4.3e-50 202.2 236 51.7
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 9.6e-50 201.1 216 52.3
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 1.6e-49 200.3 217 52.5
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 2.1e-49 199.9 221 54.3
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 6.2e-49 198.4 217 51.6
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 6.2e-49 198.4 166 65.7
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 8.2e-49 198.0 197 56.9
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 1.8e-48 196.8 217 51.6
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 3.1e-48 196.1 209 55.5
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 3.1e-48 196.1 217 52.1
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 1.5e-47 193.7 209 56.5
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 5.8e-47 191.8 293 45.1
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 1.7e-46 190.3 211 55.0
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 4.9e-46 188.7 169 60.9
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 9.3e-45 184.5 187 58.3
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 1.3e-43 180.6 186 54.3
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 1.8e-43 180.3 183 55.2
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 1.5e-42 177.2 209 48.3
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 1.8e-40 170.2 238 44.1
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 6.5e-38 161.8 123 65.0
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 2.5e-37 159.8 169 47.3
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 9.3e-37 157.9 230 45.7
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.6e-36 157.1 117 68.4
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 7.9e-36 154.8 175 51.4
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 1.8e-35 153.7 196 51.5
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 2.2e-33 146.7 188 43.1
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 1.4e-32 144.1 180 42.8
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 2.2e-30 136.7 168 45.8
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 1.6e-28 130.6 94 68.1
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 2.7e-28 129.8 133 54.1
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.3e-25 120.9 89 68.5
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 6.9e-24 115.2 91 62.6
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 2.9e-22 109.8 140 47.1
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 1.4e-19 100.9 272 31.2
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 3.0e-19 99.8 96 56.2
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 6.7e-19 98.6 109 52.3
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 3.7e-09 66.2 89 43.8
Ah.05g167420 Amaranthus hybridus HOM05D007221 ORTHO05D009204 5.9e-07 58.9 42 64.3


User provided reference genes

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