Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0005650 Simmondsia chinensis HOM05D000248 ORTHO05D000146 2.1e-76 288.9 137 100.0
AUR62014486 Chenopodium quinoa HOM05D000248 ORTHO05D000146 4.8e-17 91.7 101 46.5
EL10Ac1g00624 Beta vulgaris HOM05D000248 ORTHO05D000146 3.1e-16 89.0 101 44.6
AUR62034512 Chenopodium quinoa HOM05D000248 ORTHO05D000146 3.1e-16 89.0 101 42.6
Dinv43516 Davidia involucrata HOM05D000248 ORTHO05D000146 2.7e-15 85.9 140 32.1
CSS0017915 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 4.5e-15 85.1 112 38.4
AUR62008254 Chenopodium quinoa HOM05D000248 ORTHO05D000146 1.0e-14 84.0 101 44.6
COL.COLO4_32223 Corchorus olitorius HOM05D000248 ORTHO05D000146 1.0e-14 84.0 101 42.6
Ah.02g123560 Amaranthus hybridus HOM05D000248 ORTHO05D000146 1.7e-14 83.2 101 41.6
Gohir.D12G180400 Gossypium hirsutum HOM05D000248 ORTHO05D000146 2.2e-14 82.8 101 39.6
Gorai.008G193600 Gossypium raimondii HOM05D000248 ORTHO05D000146 2.2e-14 82.8 101 39.6
Sed0025642 Sechium edule HOM05D000248 ORTHO05D000146 5.0e-14 81.6 100 37.0
Prupe.3G082500 Prunus persica HOM05D000248 ORTHO05D000146 6.5e-14 81.3 101 40.6
Cc02_g26520 Coffea canephora HOM05D000248 ORTHO05D000146 8.5e-14 80.9 101 40.6
Duzib106G0480 Durio zibethinus HOM05D000248 ORTHO05D000146 8.5e-14 80.9 105 38.1
Hma1.2p1_1208F.1_g267050 Hydrangea macrophylla HOM05D000248 ORTHO05D000146 8.5e-14 80.9 101 40.6
GSVIVG01019353001 Vitis vinifera HOM05D000248 ORTHO05D000146 1.1e-13 80.5 101 39.6
FvH4_6g30090 Fragaria vesca HOM05D000248 ORTHO05D000146 1.5e-13 80.1 101 40.6
FAN14G0723 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.5e-13 80.1 101 40.6
Cfa009871 Carpinus fangiana HOM05D000248 ORTHO05D000146 1.9e-13 79.7 101 39.6
Gohir.A12G178000 Gossypium hirsutum HOM05D000248 ORTHO05D000146 1.9e-13 79.7 101 38.6
Duzib177G0556 Durio zibethinus HOM05D000248 ORTHO05D000146 2.5e-13 79.3 102 42.2
Duzib177G0628 Durio zibethinus HOM05D000248 ORTHO05D000146 2.5e-13 79.3 102 41.2
Thecc.05G235700 Theobroma cacao HOM05D000248 ORTHO05D000146 2.5e-13 79.3 101 38.6
Sc02g0005710 Simmondsia chinensis HOM05D000248 ORTHO05D000146 3.2e-13 79.0 103 43.7
DCAR_015730 Daucus carota HOM05D000248 ORTHO05D000146 4.2e-13 78.6 101 38.6
RcHm_v2.0_Chr2g0136311 Rosa chinensis HOM05D000248 ORTHO05D000146 4.2e-13 78.6 101 38.6
CiPaw.13G150100 Carya illinoinensis HOM05D000248 ORTHO05D000146 5.5e-13 78.2 101 38.6
Duzib177G0069 Durio zibethinus HOM05D000248 ORTHO05D000146 5.5e-13 78.2 100 42.0
PSO781G0213 Papaver somniferum HOM05D000248 ORTHO05D000146 5.5e-13 78.2 103 40.8
Cfa009866 Carpinus fangiana HOM05D000009 ORTHO05D000146 7.2e-13 77.8 101 38.6
Ciclev10032829m.g Citrus clementina HOM05D000248 ORTHO05D000146 1.2e-12 77.0 102 40.2
CSS0015990 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 1.6e-12 76.6 101 36.6
Cfa014939 Carpinus fangiana HOM05D000009 ORTHO05D000146 1.6e-12 76.6 101 38.6
Haze_23241 Corylus avellana HOM05D000009 ORTHO05D000008 2.1e-12 76.3 98 38.8
PSO170G6818 Papaver somniferum HOM05D000248 ORTHO05D000146 2.1e-12 76.3 102 40.2
PSO675G0473 Papaver somniferum HOM05D000248 ORTHO05D000146 2.1e-12 76.3 102 40.2
Sc02g0005890 Simmondsia chinensis HOM05D000248 ORTHO05D000146 2.1e-12 76.3 103 41.7
Cfa009876 Carpinus fangiana HOM05D000248 ORTHO05D000146 4.7e-12 75.1 108 37.0
RcHm_v2.0_Chr2g0136161 Rosa chinensis HOM05D000248 ORTHO05D000146 4.7e-12 75.1 101 39.6
MD05G1254200 Malus domestica HOM05D000248 ORTHO05D000146 8.0e-12 74.3 96 35.4
Nitab4.5_0003773g0020 Nicotiana tabacum HOM05D000248 ORTHO05D000146 1.0e-11 73.9 97 39.2
PSO541G4482 Papaver somniferum HOM05D000248 ORTHO05D000146 1.0e-11 73.9 102 38.2
QL04p053566 Quercus lobata HOM05D000248 ORTHO05D000146 1.0e-11 73.9 98 37.8
MD05G1253200 Malus domestica HOM05D000248 ORTHO05D000146 1.4e-11 73.6 95 40.0
Cfa009877 Carpinus fangiana HOM05D000248 ORTHO05D000146 3.0e-11 72.4 101 36.6
MD05G1253400 Malus domestica HOM05D000248 ORTHO05D000146 4.0e-11 72.0 95 37.9
Sc02g0005630 Simmondsia chinensis HOM05D000248 ORTHO05D387950 4.0e-11 72.0 48 64.6
Migut.M01974 Erythranthe guttata HOM05D000248 ORTHO05D000146 5.2e-11 71.6 104 35.6
Manes.03G070740 Manihot esculenta HOM05D000248 ORTHO05D000146 5.2e-11 71.6 104 37.5
QL11p018028 Quercus lobata HOM05D000248 ORTHO05D000146 5.2e-11 71.6 99 39.4
COL.COLO4_21823 Corchorus olitorius HOM05D000248 ORTHO05D000146 6.8e-11 71.2 101 38.6
Nitab4.5_0002056g0070 Nicotiana tabacum HOM05D000248 ORTHO05D000146 6.8e-11 71.2 97 37.1
PGR042G2403 Punica granatum HOM05D000248 ORTHO05D000146 6.8e-11 71.2 101 37.6
RhsimUnG0089300 Rhododendron simsii HOM05D000248 ORTHO05D000146 8.8e-11 70.9 104 38.5
Atru.chr2.1626 Acer truncatum HOM05D000248 ORTHO05D000146 1.2e-10 70.5 63 47.6
EL10Ac8g20003 Beta vulgaris HOM05D000248 ORTHO05D000146 1.5e-10 70.1 97 37.1
Ciclev10016359m.g Citrus clementina HOM05D000248 ORTHO05D000146 1.5e-10 70.1 99 36.4
Rhsim13G0131500 Rhododendron simsii HOM05D000248 ORTHO05D000146 1.5e-10 70.1 104 38.5
Ah.14g088120 Amaranthus hybridus HOM05D000248 ORTHO05D000146 2.0e-10 69.7 97 37.1
Cfa009870 Carpinus fangiana HOM05D000009 ORTHO05D000146 2.0e-10 69.7 101 36.6
Haze_06029 Corylus avellana HOM05D000248 ORTHO05D000146 2.0e-10 69.7 99 40.4
MD17G1184600 Malus domestica HOM05D000248 ORTHO05D000146 2.0e-10 69.7 103 39.8
PGSC0003DMG402010355 Solanum tuberosum HOM05D000248 ORTHO05D000146 2.6e-10 69.3 97 36.1
TAR627G0212 Trochodendron aralioides HOM05D000248 ORTHO05D000146 2.6e-10 69.3 95 41.1
Cfa009867 Carpinus fangiana HOM05D006853 ORTHO05D008906 4.4e-10 68.6 101 37.6
Cfa009874 Carpinus fangiana HOM05D000248 ORTHO05D000146 4.4e-10 68.6 101 37.6
CDE02G1336 Ceratophyllum demersum HOM05D000248 ORTHO05D000146 4.4e-10 68.6 105 38.1
Hund23500 Selenicereus undatus HOM05D000248 ORTHO05D000146 4.4e-10 68.6 98 35.7
MBI01_g44880_MAGBIO Magnolia biondii HOM05D000248 ORTHO05D000146 5.7e-10 68.2 100 36.0
Aqoxy4G00216 Aquilegia oxysepala HOM05D000248 ORTHO05D000146 7.5e-10 67.8 101 34.7
CDE02G1016 Ceratophyllum demersum HOM05D000248 ORTHO05D000146 7.5e-10 67.8 105 38.1
CDE02G3305 Ceratophyllum demersum HOM05D000248 ORTHO05D000146 7.5e-10 67.8 105 38.1
CAN.G519.7 Capsicum annuum HOM05D000248 ORTHO05D000146 1.3e-09 67.0 97 35.1
vmacro03509 Vaccinium macrocarpon HOM05D000248 ORTHO05D000146 1.3e-09 67.0 96 31.2
GSVIVG01012084001 Vitis vinifera HOM05D000248 ORTHO05D000146 1.3e-09 67.0 97 36.1
Zm00001eb336120 Zea mays HOM05D000248 ORTHO05D000146 1.3e-09 67.0 99 36.4
Aqoxy1G01476 Aquilegia oxysepala HOM05D002966 ORTHO05D003274 1.7e-09 66.6 101 34.7
Haze_23240 Corylus avellana HOM05D000009 ORTHO05D010531 1.7e-09 66.6 101 35.6
HanXRQChr12g0378211 Helianthus annuus HOM05D000248 ORTHO05D000146 1.7e-09 66.6 104 38.5
CSS0037719 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 2.2e-09 66.2 101 34.7
Ah.09g235220 Amaranthus hybridus HOM05D000248 ORTHO05D000146 2.8e-09 65.9 101 32.7
CDE05G1215 Ceratophyllum demersum HOM05D000248 ORTHO05D000146 2.8e-09 65.9 56 53.6
SalBow8G2337 Salvia bowleyana HOM05D000248 ORTHO05D000146 2.8e-09 65.9 93 35.5
SalBow8G3348 Salvia bowleyana HOM05D000248 ORTHO05D000146 2.8e-09 65.9 93 35.5
Solyc02g069020.3 Solanum lycopersicum HOM05D000248 ORTHO05D000146 2.8e-09 65.9 97 35.1
Sopen02g018100 Solanum pennellii HOM05D000248 ORTHO05D000146 2.8e-09 65.9 97 35.1
CSS0037488 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 3.7e-09 65.5 101 33.7
CiPaw.09G078400 Carya illinoinensis HOM05D000248 ORTHO05D000146 3.7e-09 65.5 93 35.5
Cfa017672 Carpinus fangiana HOM05D000248 ORTHO05D000146 6.3e-09 64.7 120 36.7
CDE02G0958 Ceratophyllum demersum HOM05D000248 ORTHO05D000146 6.3e-09 64.7 105 37.1
Os01g0158400 Oryza sativa ssp. japonica HOM05D000248 ORTHO05D000146 6.3e-09 64.7 93 40.9
MSTRG.16340 Avicennia marina HOM05D000248 ORTHO05D000146 8.3e-09 64.3 94 36.2
Cfa000721 Carpinus fangiana HOM05D000248 ORTHO05D000146 8.3e-09 64.3 99 37.4
CDE05G1967 Ceratophyllum demersum HOM05D000248 ORTHO05D000146 8.3e-09 64.3 101 29.7
CDE05G3505 Ceratophyllum demersum HOM05D000248 ORTHO05D000146 8.3e-09 64.3 101 29.7
Cc02_g26550 Coffea canephora HOM05D000248 ORTHO05D000146 1.1e-08 63.9 100 34.0
TWI38G2162 Tripterygium wilfordii HOM05D000248 ORTHO05D000146 1.1e-08 63.9 96 33.3
CDE02G3668 Ceratophyllum demersum HOM05D000248 ORTHO05D000146 1.4e-08 63.5 63 47.6
ECA247G0179 Erigeron canadensis HOM05D000248 ORTHO05D000146 1.4e-08 63.5 98 31.6
THA.LOC104811514 Tarenaya hassleriana HOM05D000248 ORTHO05D000146 1.4e-08 63.5 104 35.6
Potri.012G120400 Populus trichocarpa HOM05D000248 ORTHO05D000146 1.8e-08 63.2 99 36.4
Thhalv10026213m.g Eutrema salsugineum HOM05D000248 ORTHO05D000146 2.4e-08 62.8 99 34.3
Aqoxy5G03128 Aquilegia oxysepala HOM05D000248 ORTHO05D000146 3.1e-08 62.4 98 37.8
CDE05G1262 Ceratophyllum demersum HOM05D000248 ORTHO05D000146 3.1e-08 62.4 66 36.4
ECA247G2058 Erigeron canadensis HOM05D000248 ORTHO05D000146 3.1e-08 62.4 102 32.4
PSO781G0051 Papaver somniferum HOM05D000248 ORTHO05D000146 3.1e-08 62.4 92 37.0
CiPaw.09G078600 Carya illinoinensis HOM05D000248 ORTHO05D000146 4.1e-08 62.0 94 35.1
Aa31LG6G2320 Aethionema arabicum HOM05D000248 ORTHO05D000146 5.4e-08 61.6 82 39.0
Aqoxy4G01029 Aquilegia oxysepala HOM05D000248 ORTHO05D000146 5.4e-08 61.6 101 32.7
C03p82340 Brassica napus HOM05D000248 ORTHO05D000146 5.4e-08 61.6 65 43.1
BolC3t20519H Brassica oleracea HOM05D000248 ORTHO05D000146 5.4e-08 61.6 65 43.1
Haze_23999 Corylus avellana HOM05D000248 ORTHO05D000146 5.4e-08 61.6 96 39.6
Sc17g0007160 Simmondsia chinensis HOM05D000248 ORTHO05D000146 5.4e-08 61.6 106 32.1
Lsat_1_v5_gn_5_36281 Lactuca sativa HOM05D000248 ORTHO05D000146 7.0e-08 61.2 98 36.7
PSO541G5388 Papaver somniferum HOM05D000248 ORTHO05D000146 7.0e-08 61.2 63 44.4
Ca_18768_v3 Cicer arietinum L. HOM05D000248 ORTHO05D000146 9.1e-08 60.8 96 36.5
Oeu050057.1 Olea europaea HOM05D000248 ORTHO05D000146 9.1e-08 60.8 100 31.0
HPP92_026464 Vanilla planifolia HOM05D000248 ORTHO05D000146 9.1e-08 60.8 97 36.1
BcaB03g11644 Brassica carinata HOM05D000248 ORTHO05D000146 1.2e-07 60.5 105 34.3
BcaC01g00637 Brassica carinata HOM05D000248 ORTHO05D000146 1.2e-07 60.5 65 41.5
Lsat_1_v5_gn_5_36381 Lactuca sativa HOM05D000248 ORTHO05D000146 1.2e-07 60.5 95 31.6
PSO384G4796 Papaver somniferum HOM05D000009 ORTHO05D000008 1.2e-07 60.5 102 37.3
PGR042G3762 Punica granatum HOM05D000248 ORTHO05D000146 1.2e-07 60.5 101 31.7
BcaC09g51365 Brassica carinata HOM05D000248 ORTHO05D000146 1.6e-07 60.1 98 35.7
arahy.Tifrunner.gnm1.ann1.ZZ7G8M Arachis hypogaea HOM05D000248 ORTHO05D000146 2.0e-07 59.7 106 35.8
A08p14520 Brassica napus HOM05D000248 ORTHO05D000146 2.0e-07 59.7 65 41.5
BraA08t33440Z Brassica rapa HOM05D000248 ORTHO05D000146 2.0e-07 59.7 65 41.5
CARHR226610 Cardamine hirsuta HOM05D000248 ORTHO05D000146 2.0e-07 59.7 107 38.3
BolC1t01356H Brassica oleracea HOM05D000248 ORTHO05D000146 2.7e-07 59.3 96 35.4
CSS0036060 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 2.7e-07 59.3 101 31.7
SGA_v2.0_scaffold298G47681 Striga asiatica HOM05D000248 ORTHO05D000146 2.7e-07 59.3 94 30.9
HPP92_014205 Vanilla planifolia HOM05D000248 ORTHO05D000146 2.7e-07 59.3 97 35.1
CDE02G3265 Ceratophyllum demersum HOM05D000248 ORTHO05D000146 3.5e-07 58.9 56 46.4
Hma1.2p1_0040F.1_g025210 Hydrangea macrophylla HOM05D000248 ORTHO05D000146 3.5e-07 58.9 92 32.6
THA.LOC104806214 Tarenaya hassleriana HOM05D000248 ORTHO05D000146 3.5e-07 58.9 100 38.0
BraA01t01113Z Brassica rapa HOM05D000248 ORTHO05D000146 4.5e-07 58.5 98 34.7
COL.COLO4_30983 Corchorus olitorius HOM05D000248 ORTHO05D000146 4.5e-07 58.5 94 35.1
Lj2A352T44 Lonicera japonica HOM05D000248 ORTHO05D000146 4.5e-07 58.5 97 35.1
Sp7g18340 Schrenkiella parvula HOM05D000248 ORTHO05D000146 4.5e-07 58.5 101 34.7
A01p11710 Brassica napus HOM05D000248 ORTHO05D000146 5.9e-07 58.2 98 34.7
C01p13880 Brassica napus HOM05D000248 ORTHO05D000146 5.9e-07 58.2 98 35.7
Lj1C1144T7 Lonicera japonica HOM05D000248 ORTHO05D000146 5.9e-07 58.2 97 33.0
AT4G19840 Arabidopsis thaliana HOM05D000248 ORTHO05D000146 7.7e-07 57.8 106 36.8
BcaNung01748 Brassica carinata HOM05D000248 ORTHO05D000146 7.7e-07 57.8 100 31.0
Cfa011420 Carpinus fangiana HOM05D000248 ORTHO05D000146 1.0e-06 57.4 61 42.6
THA.LOC104812915 Tarenaya hassleriana HOM05D000005 ORTHO05D000146 1.0e-06 57.4 106 33.0
Zm00001eb336100 Zea mays HOM05D000248 ORTHO05D000146 1.0e-06 57.4 100 33.0
Aqoxy1G01539 Aquilegia oxysepala HOM05D000248 ORTHO05D000146 1.3e-06 57.0 119 28.6
AL7G34240 Arabidopsis lyrata HOM05D000248 ORTHO05D000146 1.3e-06 57.0 106 36.8
PSO732G0189 Papaver somniferum HOM05D000248 ORTHO05D000146 1.3e-06 57.0 102 32.4
Carub.0007s2137 Capsella rubella HOM05D000248 ORTHO05D000146 1.7e-06 56.6 60 45.0
Duzib235G1290 Durio zibethinus HOM05D000248 ORTHO05D000146 1.7e-06 56.6 99 33.3
TPR.G20975 Trifolium pratense HOM05D000248 ORTHO05D000146 1.7e-06 56.6 96 33.3
Lj4g0006685 Lotus japonicus HOM05D000248 ORTHO05D000146 2.3e-06 56.2 96 35.4
Sc24g0000100 Simmondsia chinensis HOM05D000248 ORTHO05D000146 2.3e-06 56.2 97 28.9
Thecc.06G009100 Theobroma cacao HOM05D000125 ORTHO05D009513 2.9e-06 55.8 93 34.4
MELO3C018681.2 Cucumis melo HOM05D000248 ORTHO05D000146 3.8e-06 55.5 91 36.3
MELO3C027040.2 Cucumis melo HOM05D000248 ORTHO05D000146 3.8e-06 55.5 98 30.6
VMungo0251G0674 Vigna mungo HOM05D000248 ORTHO05D000146 3.8e-06 55.5 96 35.4
arahy.Tifrunner.gnm1.ann1.6F5IGY Arachis hypogaea HOM05D000248 ORTHO05D000146 5.0e-06 55.1 106 34.9
MD05G1355700 Malus domestica HOM05D000248 ORTHO05D000146 5.0e-06 55.1 61 36.1
Medtr4g083970 Medicago truncatula HOM05D000248 ORTHO05D000146 5.0e-06 55.1 96 32.3
Phvul.002G098900 Phaseolus vulgaris HOM05D000248 ORTHO05D000146 6.6e-06 54.7 94 33.0
MELO3C003066.2 Cucumis melo HOM05D000248 ORTHO05D000146 8.6e-06 54.3 100 28.0
MELO3C023027.2 Cucumis melo HOM05D000248 ORTHO05D000146 8.6e-06 54.3 100 29.0
Glyma.20G021500 Glycine max HOM05D000248 ORTHO05D000146 8.6e-06 54.3 94 33.0
Thecc.06G010500 Theobroma cacao HOM05D000125 ORTHO05D000146 8.6e-06 54.3 99 34.3


User provided reference genes

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