Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0005300 Simmondsia chinensis HOM05D003290 ORTHO05D387735 7.6e-71 270.4 137 100.0
Cfa015081 Carpinus fangiana HOM05D003290 ORTHO05D003866 8.0e-12 74.3 110 42.7
EL10Ac6g15381 Beta vulgaris HOM05D003290 ORTHO05D003866 1.8e-11 73.2 147 37.4
Cpa.g.sc2.63 Carica papaya HOM05D003290 ORTHO05D003866 4.0e-11 72.0 172 33.1
QL03p039662 Quercus lobata HOM05D003290 ORTHO05D003866 4.0e-11 72.0 110 41.8
CANSAT78G1043 Cannabis sativa HOM05D003290 ORTHO05D003866 5.2e-11 71.6 110 41.8
HanXRQChr15g0469331 Helianthus annuus HOM05D003290 ORTHO05D003866 5.2e-11 71.6 150 35.3
CsaV3_5G017250 Cucumis sativus L. HOM05D003290 ORTHO05D003866 6.8e-11 71.2 110 40.9
MELO3C005228.2 Cucumis melo HOM05D003290 ORTHO05D003866 8.8e-11 70.9 110 40.9
CiPaw.05G160000 Carya illinoinensis HOM05D003290 ORTHO05D003866 1.5e-10 70.1 110 41.8
AUR62017800 Chenopodium quinoa HOM05D003290 ORTHO05D003866 2.0e-10 69.7 110 40.0
Ah.03g147350 Amaranthus hybridus HOM05D003290 ORTHO05D003866 2.6e-10 69.3 173 31.2
Ca_18198_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 2.6e-10 69.3 110 40.9
ClCG01G006860 Citrullus lanatus HOM05D003290 ORTHO05D003866 3.4e-10 68.9 110 40.0
Duzib268G0109 Durio zibethinus HOM05D003290 ORTHO05D003866 3.4e-10 68.9 122 37.7
Sed0007344 Sechium edule HOM05D003290 ORTHO05D003866 3.4e-10 68.9 110 40.0
AUR62003491 Chenopodium quinoa HOM05D003290 ORTHO05D003866 4.4e-10 68.6 164 32.3
Potri.010G100900 Populus trichocarpa HOM05D003290 ORTHO05D003866 4.4e-10 68.6 110 40.0
Atru.chr11.983 Acer truncatum HOM05D003290 ORTHO05D003866 5.7e-10 68.2 110 39.1
VMungo0251G2069 Vigna mungo HOM05D003290 ORTHO05D003866 5.7e-10 68.2 110 40.0
Hma1.2p1_0197F.1_g085170 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 7.5e-10 67.8 110 40.0
TPR.G11847 Trifolium pratense HOM05D003290 ORTHO05D003866 7.5e-10 67.8 110 40.0
TAR629G1764 Trochodendron aralioides HOM05D003290 ORTHO05D003866 7.5e-10 67.8 110 41.8
Ciclev10018329m.g Citrus clementina HOM05D003290 ORTHO05D003866 9.8e-10 67.4 110 40.0
CDE06G1581 Ceratophyllum demersum HOM05D003290 ORTHO05D003866 1.3e-09 67.0 111 39.6
COL.COLO4_27555 Corchorus olitorius HOM05D003290 ORTHO05D003866 1.3e-09 67.0 110 39.1
Lsat_1_v5_gn_5_35481 Lactuca sativa HOM05D003290 ORTHO05D003866 1.3e-09 67.0 150 34.0
GSVIVG01011573001 Vitis vinifera HOM05D003290 ORTHO05D003866 1.3e-09 67.0 110 40.0
Glyma.08G092000 Glycine max HOM05D003290 ORTHO05D003866 1.7e-09 66.6 110 39.1
Lj4g0019755 Lotus japonicus HOM05D003290 ORTHO05D003866 1.7e-09 66.6 162 32.7
Lalb_Chr13g0293001 Lupinus albus HOM05D003290 ORTHO05D003866 1.7e-09 66.6 110 39.1
Phvul.002G185150 Phaseolus vulgaris HOM05D003290 ORTHO05D003866 1.7e-09 66.6 110 39.1
Aqoxy3G04046 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 2.2e-09 66.2 110 40.0
PSO017G1263 Papaver somniferum HOM05D003290 ORTHO05D003866 2.8e-09 65.9 157 32.5
Thecc.02G301400 Theobroma cacao HOM05D003290 ORTHO05D003866 2.8e-09 65.9 110 38.2
CSS0011262 Camellia sinensis var. sinensis HOM05D003290 ORTHO05D003866 3.7e-09 65.5 110 40.9
MD13G1014200 Malus domestica HOM05D003290 ORTHO05D003866 3.7e-09 65.5 110 39.1
Psat7g085560 Pisum sativum HOM05D003290 ORTHO05D003866 3.7e-09 65.5 110 39.1
Migut.E00570 Erythranthe guttata HOM05D003290 ORTHO05D003866 4.8e-09 65.1 110 39.1
Nn4g24593 Nelumbo nucifera HOM05D003290 ORTHO05D003866 4.8e-09 65.1 110 39.1
Nitab4.5_0007122g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 4.8e-09 65.1 102 40.2
FAN22G1284 Fragaria x ananassa HOM05D003290 ORTHO05D003866 6.3e-09 64.7 110 38.2
Potri.008G140700 Populus trichocarpa HOM05D003290 ORTHO05D003866 6.3e-09 64.7 110 40.0
RcHm_v2.0_Chr4g0445491 Rosa chinensis HOM05D003290 ORTHO05D003866 6.3e-09 64.7 110 38.2
Sabra08G0106800 Salix brachista HOM05D003290 ORTHO05D003866 6.3e-09 64.7 110 40.0
arahy.Tifrunner.gnm1.ann1.4ZG746 Arachis hypogaea HOM05D003290 ORTHO05D003866 8.3e-09 64.3 110 38.2
arahy.Tifrunner.gnm1.ann1.GST19D Arachis hypogaea HOM05D003290 ORTHO05D003866 8.3e-09 64.3 110 38.2
arahy.Tifrunner.gnm1.ann1.P8F85A Arachis hypogaea HOM05D003290 ORTHO05D003866 8.3e-09 64.3 110 38.2
Manes.15G139900 Manihot esculenta HOM05D003290 ORTHO05D003866 8.3e-09 64.3 110 39.1
Prupe.1G339200 Prunus persica HOM05D003290 ORTHO05D003866 1.1e-08 63.9 110 38.2
Cc11_g05270 Coffea canephora HOM05D003290 ORTHO05D003866 1.4e-08 63.5 110 36.4
FvH4_4g35880 Fragaria vesca HOM05D003290 ORTHO05D003866 1.4e-08 63.5 110 38.2
FAN12G1356 Fragaria x ananassa HOM05D003290 ORTHO05D003866 1.4e-08 63.5 110 38.2
MBI13_g17879_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 1.4e-08 63.5 110 39.1
MD16G1011500 Malus domestica HOM05D003290 ORTHO05D003866 1.4e-08 63.5 110 38.2
PGR142G0945 Punica granatum HOM05D003290 ORTHO05D003866 1.4e-08 63.5 110 38.2
TWI74G0523 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 1.4e-08 63.5 110 38.2
Os12g0641100 Oryza sativa ssp. japonica HOM05D003290 ORTHO05D003866 1.8e-08 63.2 110 40.0
Dinv07020 Davidia involucrata HOM05D003290 ORTHO05D003866 2.4e-08 62.8 110 39.1
ECA234G2339 Erigeron canadensis HOM05D003290 ORTHO05D003866 2.4e-08 62.8 150 32.7
Eucgr.G02062 Eucalyptus grandis HOM05D003290 ORTHO05D003866 2.4e-08 62.8 110 39.1
CARHR144580 Cardamine hirsuta HOM05D003290 ORTHO05D003866 3.1e-08 62.4 63 50.8
Manes.17G091100 Manihot esculenta HOM05D003290 ORTHO05D003866 3.1e-08 62.4 110 37.3
Sp2g13410 Schrenkiella parvula HOM05D003290 ORTHO05D003866 3.1e-08 62.4 110 37.3
AL5G11170 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 4.1e-08 62.0 110 38.2
Peaxi162Scf00349g00111 Petunia axillaris HOM05D003290 ORTHO05D003866 4.1e-08 62.0 110 37.3
Carub.0005s0099 Capsella rubella HOM05D003290 ORTHO05D003866 5.4e-08 61.6 110 37.3
Sc03g0005960 Simmondsia chinensis HOM05D003290 ORTHO05D003866 5.4e-08 61.6 60 56.7
Actinidia12429 Actinidia chinensis HOM05D003290 ORTHO05D003866 7.0e-08 61.2 110 38.2
ATR0598G076 Amborella trichopoda HOM05D003290 ORTHO05D003866 7.0e-08 61.2 150 32.0
BcaB07g30722 Brassica carinata HOM05D003290 ORTHO05D003866 9.1e-08 60.8 110 36.4
CAN.G282.94 Capsicum annuum HOM05D003290 ORTHO05D003866 9.1e-08 60.8 110 36.4
BcaC04g21541 Brassica carinata HOM05D003290 ORTHO05D003866 1.2e-07 60.5 110 36.4
A09p23700 Brassica napus HOM05D003290 ORTHO05D003866 1.2e-07 60.5 110 36.4
C09p30540 Brassica napus HOM05D003290 ORTHO05D003866 1.2e-07 60.5 110 36.4
BolC9t55917H Brassica oleracea HOM05D003290 ORTHO05D003866 1.2e-07 60.5 110 36.4
BraA09t37969Z Brassica rapa HOM05D003290 ORTHO05D003866 1.2e-07 60.5 110 36.4
DCAR_030316 Daucus carota HOM05D003290 ORTHO05D003866 1.2e-07 60.5 110 36.4
Gohir.A03G113800 Gossypium hirsutum HOM05D003290 ORTHO05D003866 1.2e-07 60.5 110 36.4
HanXRQChr12g0381631 Helianthus annuus HOM05D003290 ORTHO05D003866 1.2e-07 60.5 111 36.0
Lj6C728G5 Lonicera japonica HOM05D003290 ORTHO05D003866 1.2e-07 60.5 110 36.4
Gohir.D02G138100 Gossypium hirsutum HOM05D003290 ORTHO05D003866 1.6e-07 60.1 110 36.4
Gorai.005G154600 Gossypium raimondii HOM05D003290 ORTHO05D003866 1.6e-07 60.1 110 36.4
vmacro10755 Vaccinium macrocarpon HOM05D003290 ORTHO05D003866 1.6e-07 60.1 122 35.2
AT2G01980 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 2.0e-07 59.7 110 36.4
Thhalv10003547m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 2.0e-07 59.7 110 35.5
MSTRG.2101 Avicennia marina HOM05D003290 ORTHO05D003866 2.7e-07 59.3 122 35.2
TWI56G1413 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 2.7e-07 59.3 110 37.3
Lj4g0008630 Lotus japonicus HOM05D003290 ORTHO05D003866 3.5e-07 58.9 108 37.0
Sopen01g001090 Solanum pennellii HOM05D003290 ORTHO05D003866 3.5e-07 58.9 108 37.0
THA.LOC104805106 Tarenaya hassleriana HOM05D003290 ORTHO05D003866 4.5e-07 58.5 52 57.7
HPP92_016411 Vanilla planifolia HOM05D003290 ORTHO05D003866 4.5e-07 58.5 110 36.4
PSO170G2638 Papaver somniferum HOM05D003290 ORTHO05D003866 7.7e-07 57.8 157 29.9
Solyc01g005020.3 Solanum lycopersicum HOM05D003290 ORTHO05D003866 1.0e-06 57.4 108 36.1
PGSC0003DMG400022786 Solanum tuberosum HOM05D003290 ORTHO05D003866 1.0e-06 57.4 108 36.1
Aa31LG2G7940 Aethionema arabicum HOM05D003290 ORTHO05D003866 1.3e-06 57.0 55 49.1
Mapoly0206s0002 Marchantia polymorpha HOM05D003290 ORTHO05D003866 1.7e-06 56.6 147 34.0
SGA_v2.0_scaffold348G49593 Striga asiatica HOM05D003290 ORTHO05D003866 1.7e-06 56.6 110 36.4
Cc11_g05260 Coffea canephora HOM05D003290 ORTHO05D003866 2.9e-06 55.8 60 46.7
Thhalv10006906m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 2.9e-06 55.8 156 28.8
Sp1g13020 Schrenkiella parvula HOM05D003290 ORTHO05D003866 2.9e-06 55.8 123 33.3
TAR629G0420 Trochodendron aralioides HOM05D003290 ORTHO05D003866 2.9e-06 55.8 60 46.7
Nitab4.5_0001529g0050 Nicotiana tabacum HOM05D003290 ORTHO05D003866 3.8e-06 55.5 53 54.7
unitig_27.g25301 Utricularia gibba HOM05D003290 ORTHO05D003866 3.8e-06 55.5 53 56.6
Aqoxy4G00109 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 5.0e-06 55.1 110 34.5
AL1G26630 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 5.0e-06 55.1 49 53.1
PSO729G0139 Papaver somniferum HOM05D003290 ORTHO05D003866 5.0e-06 55.1 152 29.6
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 8.6e-06 54.3 108 34.3
MBI13_g26466_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 8.6e-06 54.3 53 54.7


User provided reference genes

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