Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0004640 Simmondsia chinensis HOM05D000744 ORTHO05D000332 6.5e-157 557.4 286 100.0
COL.COLO4_00181 Corchorus olitorius HOM05D000744 ORTHO05D000332 9.3e-71 271.2 288 57.3
AUR62007680 Chenopodium quinoa HOM05D000744 ORTHO05D000332 3.9e-69 265.8 299 54.8
Ah.05g169210 Amaranthus hybridus HOM05D000744 ORTHO05D000332 5.6e-68 261.9 300 55.3
Duzib116G0772 Durio zibethinus HOM05D000744 ORTHO05D000332 7.4e-68 261.5 286 55.9
Atru.chr13.1623 Acer truncatum HOM05D000744 ORTHO05D000332 4.0e-66 255.8 286 58.4
Dinv41152 Davidia involucrata HOM05D000744 ORTHO05D000332 5.3e-66 255.4 287 54.0
AUR62013458 Chenopodium quinoa HOM05D000744 ORTHO05D000332 1.2e-65 254.2 300 53.3
Potri.002G075500 Populus trichocarpa HOM05D000744 ORTHO05D000332 1.2e-65 254.2 286 54.2
Gorai.009G250700 Gossypium raimondii HOM05D000744 ORTHO05D000332 2.0e-65 253.4 287 54.7
Gohir.D05G241300 Gossypium hirsutum HOM05D000744 ORTHO05D000332 3.4e-65 252.7 287 54.7
Cpa.g.sc26.64 Carica papaya HOM05D000744 ORTHO05D000332 5.8e-65 251.9 288 55.9
Prupe.8G010900 Prunus persica HOM05D000744 ORTHO05D000332 1.0e-64 251.1 297 56.9
TWI32G1119 Tripterygium wilfordii HOM05D000744 ORTHO05D000332 3.8e-64 249.2 284 53.2
Ciclev10000887m.g Citrus clementina HOM05D000744 ORTHO05D000332 1.4e-63 247.3 290 55.2
Gohir.A05G240000 Gossypium hirsutum HOM05D000744 ORTHO05D000332 5.5e-63 245.4 288 53.8
TWI34G1039 Tripterygium wilfordii HOM05D000744 ORTHO05D000332 1.3e-61 240.7 290 52.1
Duzib093G2185 Durio zibethinus HOM05D000744 ORTHO05D000332 1.8e-61 240.4 289 53.6
RcHm_v2.0_Chr6g0278141 Rosa chinensis HOM05D000744 ORTHO05D000332 1.8e-61 240.4 297 51.5
Hund26766 Selenicereus undatus HOM05D000744 ORTHO05D000332 3.0e-61 239.6 284 54.9
EL10Ac1g01403 Beta vulgaris HOM05D000744 ORTHO05D000332 5.1e-61 238.8 288 53.8
Haze_17665 Corylus avellana HOM05D000744 ORTHO05D000332 1.5e-60 237.3 298 53.4
MD10G1007700 Malus domestica HOM05D000744 ORTHO05D000332 1.9e-60 236.9 297 52.2
Hma1.2p1_0642F.1_g194320 Hydrangea macrophylla HOM05D000744 ORTHO05D000332 7.4e-60 235.0 297 52.5
CSS0032103 Camellia sinensis var. sinensis HOM05D000744 ORTHO05D000332 9.6e-60 234.6 292 52.4
CSS0010689 Camellia sinensis var. sinensis HOM05D000744 ORTHO05D000332 1.3e-59 234.2 292 52.4
Cfa018401 Carpinus fangiana HOM05D000744 ORTHO05D000332 2.1e-59 233.4 300 51.3
MD10G1007100 Malus domestica HOM05D000744 ORTHO05D000332 2.8e-59 233.0 297 52.5
SalBow7G0790 Salvia bowleyana HOM05D000744 ORTHO05D000332 3.7e-59 232.6 286 51.7
Sabra02G0059000 Salix brachista HOM05D000744 ORTHO05D000332 1.1e-58 231.1 290 50.3
Thecc.08G137000 Theobroma cacao HOM05D000744 ORTHO05D000332 1.1e-58 231.1 289 51.6
CiPaw.15G024700 Carya illinoinensis HOM05D000744 ORTHO05D000332 6.9e-58 228.4 291 52.9
Lj4C686T0 Lonicera japonica HOM05D000744 ORTHO05D000332 2.6e-57 226.5 282 52.1
MSTRG.1395 Avicennia marina HOM05D000744 ORTHO05D000332 3.8e-56 222.6 291 49.8
TAR625G0671 Trochodendron aralioides HOM05D000744 ORTHO05D000332 5.0e-56 222.2 295 50.5
Manes.18G084535 Manihot esculenta HOM05D000744 ORTHO05D000332 1.1e-55 221.1 292 51.4
Oeu015298.1 Olea europaea HOM05D000744 ORTHO05D000332 1.1e-55 221.1 286 50.3
CANSAT21G2019 Cannabis sativa HOM05D000744 ORTHO05D000332 4.2e-55 219.2 289 52.2
Manes.02G172100 Manihot esculenta HOM05D000744 ORTHO05D000332 1.2e-54 217.6 291 49.1
Eucgr.F02773 Eucalyptus grandis HOM05D000744 ORTHO05D000332 2.1e-54 216.9 290 49.3
TAR381G1504 Trochodendron aralioides HOM05D000744 ORTHO05D000332 2.7e-54 216.5 296 50.0
Nn5g28497 Nelumbo nucifera HOM05D000744 ORTHO05D000332 3.6e-54 216.1 297 49.8
Hund17366 Selenicereus undatus HOM05D000744 ORTHO05D000332 3.6e-54 216.1 287 50.5
Lj1g0011246 Lotus japonicus HOM05D000744 ORTHO05D000332 7.9e-54 214.9 279 50.2
Dinv25772 Davidia involucrata HOM05D000744 ORTHO05D000332 3.0e-53 213.0 297 48.1
CSS0015302 Camellia sinensis var. sinensis HOM05D000744 ORTHO05D000332 1.1e-52 211.1 287 47.7
Potri.005G184900 Populus trichocarpa HOM05D000744 ORTHO05D000332 5.7e-52 208.8 291 48.5
Glyma.04G243600 Glycine max HOM05D000744 ORTHO05D000332 7.4e-52 208.4 281 49.1
Glyma.13G036000 Glycine max HOM05D000744 ORTHO05D000332 9.7e-52 208.0 285 47.7
Peaxi162Scf00066g00107 Petunia axillaris HOM05D000744 ORTHO05D000332 9.7e-52 208.0 299 46.2
FAN15G0712 Fragaria x ananassa HOM05D000744 ORTHO05D000332 1.3e-51 207.6 292 48.3
FAN24G2496 Fragaria x ananassa HOM05D000744 ORTHO05D000332 1.3e-51 207.6 292 48.3
Oeu001549.1 Olea europaea HOM05D000744 ORTHO05D000332 1.3e-51 207.6 286 48.3
Gohir.A05G269400 Gossypium hirsutum HOM05D000744 ORTHO05D000332 1.6e-51 207.2 279 47.3
FAN20G0059 Fragaria x ananassa HOM05D000744 ORTHO05D000332 2.8e-51 206.5 292 48.3
FAN27G3305 Fragaria x ananassa HOM05D000744 ORTHO05D000332 2.8e-51 206.5 292 48.3
FvH4_2g15400 Fragaria vesca HOM05D000744 ORTHO05D000332 4.8e-51 205.7 292 48.3
PSO170G3985 Papaver somniferum HOM05D000744 ORTHO05D000332 3.1e-50 203.0 290 49.3
Lalb_Chr23g0271231 Lupinus albus HOM05D000744 ORTHO05D000332 4.1e-50 202.6 284 49.3
Gorai.009G284400 Gossypium raimondii HOM05D000744 ORTHO05D000332 5.3e-50 202.2 279 47.0
PSO528G0047 Papaver somniferum HOM05D000744 ORTHO05D000332 1.2e-49 201.1 290 49.0
Cc10_g13410 Coffea canephora HOM05D000744 ORTHO05D000332 1.0e-48 198.0 291 47.1
Gohir.D05G271400 Gossypium hirsutum HOM05D000744 ORTHO05D000332 3.8e-48 196.1 279 46.6
Phvul.001G065700 Phaseolus vulgaris HOM05D000744 ORTHO05D000332 3.8e-48 196.1 287 47.7
Solyc04g063280.3 Solanum lycopersicum HOM05D000744 ORTHO05D000332 5.0e-48 195.7 297 43.8
Sopen04g026200 Solanum pennellii HOM05D000744 ORTHO05D000332 6.5e-48 195.3 297 43.8
CsaV3_7G022130 Cucumis sativus L. HOM05D000744 ORTHO05D000332 8.5e-48 194.9 278 48.2
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 1.4e-47 194.1 278 46.8
ECA248G1495 Erigeron canadensis HOM05D000744 ORTHO05D000332 1.9e-47 193.7 283 47.7
Oeu047151.1 Olea europaea HOM05D000744 ORTHO05D000332 2.5e-47 193.4 282 45.4
SGA_v2.0_scaffold24G10396 Striga asiatica HOM05D000744 ORTHO05D000332 3.2e-47 193.0 282 47.9
Glyma.06G119700 Glycine max HOM05D000744 ORTHO05D000332 4.2e-47 192.6 283 47.7
HanXRQChr14g0449521 Helianthus annuus HOM05D000744 ORTHO05D000332 7.2e-47 191.8 288 46.2
Lalb_Chr11g0066281 Lupinus albus HOM05D000744 ORTHO05D000332 7.2e-47 191.8 285 48.8
Ca_16627_v3 Cicer arietinum L. HOM05D000744 ORTHO05D000332 4.6e-46 189.1 281 48.4
QL09p029787 Quercus lobata HOM05D000744 ORTHO05D000332 1.0e-45 188.0 292 46.6
DCAR_031490 Daucus carota HOM05D000744 ORTHO05D000332 1.8e-45 187.2 300 48.0
Migut.C01086 Erythranthe guttata HOM05D000744 ORTHO05D000332 2.3e-45 186.8 277 46.6
Eucgr.F04281 Eucalyptus grandis HOM05D000744 ORTHO05D000332 3.9e-45 186.0 278 46.8
Lalb_Chr08g0240941 Lupinus albus HOM05D000744 ORTHO05D000332 1.1e-44 184.5 289 46.0
TPR.G6341 Trifolium pratense HOM05D000744 ORTHO05D000332 1.5e-44 184.1 280 46.1
Sabra05G0141400 Salix brachista HOM05D000744 ORTHO05D000332 2.6e-44 183.3 287 44.9
MSTRG.25347 Avicennia marina HOM05D000744 ORTHO05D000332 3.3e-44 183.0 281 45.2
Psat5g083920 Pisum sativum HOM05D000744 ORTHO05D000332 3.3e-44 183.0 275 48.4
Phvul.009G132300 Phaseolus vulgaris HOM05D000744 ORTHO05D000332 5.7e-44 182.2 285 44.9
CAN.G46.24 Capsicum annuum HOM05D000744 ORTHO05D000332 7.4e-44 181.8 291 41.9
Eucgr.F04283 Eucalyptus grandis HOM05D000744 ORTHO05D000332 7.4e-44 181.8 272 46.7
Actinidia15187 Actinidia chinensis HOM05D000744 ORTHO05D000332 2.8e-43 179.9 288 45.8
MBI03_g20842_MAGBIO Magnolia biondii HOM05D000744 ORTHO05D000332 2.8e-43 179.9 301 44.2
Sed0016269 Sechium edule HOM05D000744 ORTHO05D000332 2.8e-43 179.9 280 45.7
MBI06_g27456_MAGBIO Magnolia biondii HOM05D000744 ORTHO05D000332 3.7e-43 179.5 288 44.8
DCAR_014395 Daucus carota HOM05D000744 ORTHO05D000332 1.1e-42 177.9 294 44.9
Nitab4.5_0000847g0100 Nicotiana tabacum HOM05D000744 ORTHO05D000332 1.4e-42 177.6 302 42.1
Nitab4.5_0004701g0020 Nicotiana tabacum HOM05D000744 ORTHO05D000332 1.4e-42 177.6 294 41.5
Actinidia10680 Actinidia chinensis HOM05D000744 ORTHO05D000332 1.8e-42 177.2 250 47.6
VMungo1309G0816 Vigna mungo HOM05D000744 ORTHO05D000332 2.4e-42 176.8 286 44.1
VMungo0647G1677 Vigna mungo HOM05D000744 ORTHO05D000332 4.1e-42 176.0 285 44.9
ClCG11G008480 Citrullus lanatus HOM05D000744 ORTHO05D000332 1.5e-41 174.1 283 44.9
vmacro00874 Vaccinium macrocarpon HOM05D000744 ORTHO05D000332 1.5e-41 174.1 281 44.8
arahy.Tifrunner.gnm1.ann1.H4I0EH Arachis hypogaea HOM05D000744 ORTHO05D000332 2.6e-41 173.3 287 44.6
MELO3C013243.2 Cucumis melo HOM05D000744 ORTHO05D000332 5.9e-41 172.2 278 45.7
Medtr3g088805 Medicago truncatula HOM05D000744 ORTHO05D000332 7.7e-41 171.8 282 43.3
unitig_0.g2108 Utricularia gibba HOM05D000744 ORTHO05D000332 1.0e-40 171.4 285 41.8
ClCG08G006240 Citrullus lanatus HOM05D000744 ORTHO05D000332 4.2e-39 166.0 278 43.9
Sed0013582 Sechium edule HOM05D000744 ORTHO05D000332 5.5e-39 165.6 288 42.0
Aqoxy5G02301 Aquilegia oxysepala HOM05D000744 ORTHO05D000332 1.6e-38 164.1 287 44.3
Rhsim11G0074300 Rhododendron simsii HOM05D000744 ORTHO05D000332 3.6e-38 162.9 281 43.8
ECA232G4703 Erigeron canadensis HOM05D000744 ORTHO05D000332 1.8e-37 160.6 309 41.4
arahy.Tifrunner.gnm1.ann1.D0Q561 Arachis hypogaea HOM05D000744 ORTHO05D000332 2.3e-37 160.2 287 42.9
CsaV3_6G031210 Cucumis sativus L. HOM05D000744 ORTHO05D000332 2.3e-37 160.2 275 42.9
PGR042G3053 Punica granatum HOM05D000744 ORTHO05D000332 1.5e-36 157.5 298 44.0
MELO3C008434.2 Cucumis melo HOM05D000744 ORTHO05D000332 2.0e-36 157.1 274 43.1
Os11g0199700 Oryza sativa ssp. japonica HOM05D000744 ORTHO05D000332 2.0e-36 157.1 355 34.9
SGA_v2.0_scaffold48G17916 Striga asiatica HOM05D000744 ORTHO05D000332 2.6e-36 156.8 285 43.9
Lj1g0000410 Lotus japonicus HOM05D000744 ORTHO05D000332 7.4e-36 155.2 278 43.2
AL1G34480 Arabidopsis lyrata HOM05D000744 ORTHO05D000332 2.2e-35 153.7 287 39.4
Lsat_1_v5_gn_1_9041 Lactuca sativa HOM05D000744 ORTHO05D000332 2.2e-35 153.7 291 43.3
THA.LOC104803437 Tarenaya hassleriana HOM05D000744 ORTHO05D000332 2.2e-35 153.7 287 42.2
Lj7A356G43 Lonicera japonica HOM05D000744 ORTHO05D000332 2.8e-35 153.3 221 44.8
Thhalv10007405m.g Eutrema salsugineum HOM05D000744 ORTHO05D000332 4.1e-34 149.4 279 39.8
HanXRQChr02g0041861 Helianthus annuus HOM05D000744 ORTHO05D000332 5.3e-34 149.1 281 41.3
Aa31LG7G5520 Aethionema arabicum HOM05D000744 ORTHO05D000332 2.6e-33 146.7 293 39.2
A06p17430 Brassica napus HOM05D000744 ORTHO05D000332 2.6e-33 146.7 286 40.2
CARHR021770 Cardamine hirsuta HOM05D000744 ORTHO05D000332 3.5e-33 146.4 288 41.0
AT1G21380 Arabidopsis thaliana HOM05D000744 ORTHO05D000332 1.1e-31 141.4 289 38.1
Sabra02G0059200 Salix brachista HOM05D000744 ORTHO05D000332 1.5e-31 141.0 216 44.0
Zm00001eb112580 Zea mays HOM05D000744 ORTHO05D000332 2.5e-31 140.2 343 36.2
Zm00001eb168920 Zea mays HOM05D000744 ORTHO05D000332 2.5e-31 140.2 338 35.8
AL2G37130 Arabidopsis lyrata HOM05D000744 ORTHO05D000332 3.2e-31 139.8 281 38.4
ATR0776G024 Amborella trichopoda HOM05D000744 ORTHO05D000332 9.4e-31 138.3 308 37.3
Hma1.2p1_1125F.1_g259590 Hydrangea macrophylla HOM05D000744 ORTHO05D000332 1.6e-30 137.5 238 40.8
GSVIVG01008766001 Vitis vinifera HOM05D000744 ORTHO05D000332 3.6e-30 136.3 116 63.8
BcaC07g39094 Brassica carinata HOM05D000744 ORTHO05D000332 4.7e-30 136.0 287 40.4
BcaB03g12818 Brassica carinata HOM05D000744 ORTHO05D000332 6.1e-30 135.6 282 38.7
C08p20780 Brassica napus HOM05D000744 ORTHO05D000332 1.4e-29 134.4 287 39.7
BolC8t49717H Brassica oleracea HOM05D000744 ORTHO05D000332 1.4e-29 134.4 287 39.7
C05p20270 Brassica napus HOM05D000744 ORTHO05D000332 3.0e-29 133.3 285 36.8
BcaC05g26045 Brassica carinata HOM05D000744 ORTHO05D000332 5.2e-29 132.5 286 36.4
PGR044G0329 Punica granatum HOM05D000744 ORTHO05D000332 5.2e-29 132.5 270 37.8
Carub.0001s2079 Capsella rubella HOM05D000744 ORTHO05D000332 8.8e-29 131.7 287 36.9
BolC5t30720H Brassica oleracea HOM05D000744 ORTHO05D000332 2.0e-28 130.6 286 35.7
Cc00_g30090 Coffea canephora HOM05D000744 ORTHO05D000332 1.3e-27 127.9 124 54.8
BcaB07g32126 Brassica carinata HOM05D000744 ORTHO05D000332 1.7e-27 127.5 288 36.8
THA.LOC104813697 Tarenaya hassleriana HOM05D000744 ORTHO05D000332 1.1e-26 124.8 289 37.7
CDE08G0987 Ceratophyllum demersum HOM05D000744 ORTHO05D000332 1.4e-26 124.4 278 38.8
BraA06t24840Z Brassica rapa HOM05D000744 ORTHO05D000332 5.3e-26 122.5 289 36.7
BraA07t29255Z Brassica rapa HOM05D000744 ORTHO05D000332 5.3e-26 122.5 293 35.5
ECA246G5261 Erigeron canadensis HOM05D000744 ORTHO05D000332 2.0e-25 120.6 274 36.5
A07p15150 Brassica napus HOM05D000744 ORTHO05D000332 2.7e-25 120.2 292 35.3
Sed0008400 Sechium edule HOM05D000744 ORTHO05D000332 2.7e-25 120.2 279 38.4
HPP92_004460 Vanilla planifolia HOM05D000744 ORTHO05D000332 2.7e-25 120.2 317 35.3
Thhalv10019577m.g Eutrema salsugineum HOM05D000744 ORTHO05D000332 1.3e-24 117.9 289 37.0
Peaxi162Scf01184g00148 Petunia axillaris HOM05D000744 ORTHO05D000332 1.7e-24 117.5 296 34.8
Sp1g18930 Schrenkiella parvula HOM05D000744 ORTHO05D000332 2.2e-24 117.1 276 36.2
Sp5g32130 Schrenkiella parvula HOM05D000744 ORTHO05D000332 2.2e-24 117.1 276 35.1
SalBow2G1558 Salvia bowleyana HOM05D000744 ORTHO05D000332 3.8e-24 116.3 287 36.6
BolC7t42774H Brassica oleracea HOM05D000744 ORTHO05D000332 1.6e-22 110.9 283 35.0
Oeu064151.1 Olea europaea HOM05D000744 ORTHO05D000332 1.6e-22 110.9 222 38.3
BcaC06g34865 Brassica carinata HOM05D000744 ORTHO05D000332 3.6e-22 109.8 286 34.6
C07p22220 Brassica napus HOM05D000744 ORTHO05D000332 6.1e-22 109.0 288 34.4
Sed0027696 Sechium edule HOM05D000744 ORTHO05D000332 4.0e-21 106.3 279 35.8
BcaB03g14269 Brassica carinata HOM05D000744 ORTHO05D000332 6.8e-21 105.5 284 34.9
THA.LOC104812054 Tarenaya hassleriana HOM05D000744 ORTHO05D000332 2.4e-18 97.1 287 34.8
AT1G76970 Arabidopsis thaliana HOM05D000744 ORTHO05D000332 1.5e-15 87.8 281 29.9
DCAR_001124 Daucus carota HOM05D000744 ORTHO05D000332 2.8e-14 83.6 200 35.0
SEGI_20957 Sequoiadendron giganteum HOM05D000744 ORTHO05D000332 3.6e-14 83.2 362 29.6
Gorai.009G333300 Gossypium raimondii HOM05D000744 ORTHO05D000332 1.0e-13 81.6 82 50.0
Mapoly0027s0043 Marchantia polymorpha HOM05D000744 ORTHO05D000332 1.4e-13 81.3 145 40.7
unitig_26.g9908 Utricularia gibba HOM05D000744 ORTHO05D000332 2.8e-11 73.6 313 28.4
Carub.0002s2387 Capsella rubella HOM05D000744 ORTHO05D000332 2.4e-10 70.5 285 30.9
BcaC08g45488 Brassica carinata HOM05D000744 ORTHO05D000332 1.6e-09 67.8 70 55.7
C06p31570 Brassica napus HOM05D000744 ORTHO05D000332 1.6e-09 67.8 70 55.7
SEGI_40432 Sequoiadendron giganteum HOM05D000744 ORTHO05D000332 2.7e-09 67.0 257 30.0
BolC6t40141H Brassica oleracea HOM05D000744 ORTHO05D000332 3.8e-08 63.2 279 30.1
SEGI_35221 Sequoiadendron giganteum HOM05D000744 ORTHO05D000332 3.8e-08 63.2 312 29.2
AagrBONN_evm.TU.Sc2ySwM_368.1359 Anthoceros agrestis HOM05D000744 ORTHO05D000332 1.1e-07 61.6 68 51.5
Peaxi162Scf00276g00311 Petunia axillaris HOM05D000744 ORTHO05D000332 1.9e-07 60.8 149 36.9
MSTRG.14020 Avicennia marina HOM05D000744 ORTHO05D000332 7.3e-07 58.9 127 36.2
SMO167G0011 Selaginella moellendorffii HOM05D000744 ORTHO05D000332 4.7e-06 56.2 71 49.3
unitig_21.g20185 Utricularia gibba HOM05D000744 ORTHO05D000332 4.7e-06 56.2 82 45.1
TWI74G1268 Tripterygium wilfordii HOM05D000744 ORTHO05D000332 6.1e-06 55.8 162 35.2
C06p51200 Brassica napus HOM05D000744 ORTHO05D000332 8.0e-06 55.5 272 27.9
CARHR070480 Cardamine hirsuta HOM05D000744 ORTHO05D000332 8.0e-06 55.5 51 58.8
SHI23728 Sapria himalayana HOM05D000744 ORTHO05D000332 8.0e-06 55.5 185 33.5


User provided reference genes

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