Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 4.4e-231 804.3 410 100.0
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 2.2e-25 120.9 213 37.6
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 6.5e-25 119.4 204 37.7
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 1.9e-24 117.9 204 37.3
QL10p045460 Quercus lobata HOM05D003174 ORTHO05D003439 4.2e-24 116.7 252 34.5
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 9.4e-24 115.5 178 38.8
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 2.1e-23 114.4 266 32.7
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 3.6e-23 113.6 218 36.2
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 6.1e-23 112.8 264 29.5
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 7.9e-23 112.5 215 36.3
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 1.8e-22 111.3 190 38.9
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 5.1e-22 109.8 230 34.8
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 6.7e-22 109.4 201 33.3
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 1.5e-21 108.2 164 36.0
Thecc.05G002600 Theobroma cacao HOM05D003174 ORTHO05D003439 1.5e-21 108.2 171 35.1
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 2.5e-21 107.5 176 38.6
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 3.3e-21 107.1 186 36.0
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 3.3e-21 107.1 195 37.4
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 4.3e-21 106.7 257 30.4
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 1.3e-20 105.1 225 33.8
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.7e-20 104.8 203 33.5
Manes.04G049000 Manihot esculenta HOM05D003174 ORTHO05D003439 3.7e-20 103.6 230 33.9
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 1.1e-19 102.1 209 32.5
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 2.4e-19 100.9 201 33.8
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 3.1e-19 100.5 195 34.9
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 4.1e-19 100.1 225 32.9
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 4.1e-19 100.1 324 29.0
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 4.1e-19 100.1 324 29.0
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 1.2e-18 98.6 221 33.0
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 1.5e-18 98.2 218 33.5
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 2.6e-18 97.4 218 34.9
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 3.4e-18 97.1 203 32.0
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 4.5e-18 96.7 185 34.6
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 5.9e-18 96.3 187 32.6
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 1.0e-17 95.5 232 32.3
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.0e-17 95.5 248 31.0
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 1.3e-17 95.1 197 32.5
COL.COLO4_20117 Corchorus olitorius HOM05D003174 ORTHO05D003439 1.7e-17 94.7 264 28.0
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 2.2e-17 94.4 248 30.6
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 2.2e-17 94.4 225 32.0
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 2.2e-17 94.4 226 32.7
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 2.2e-17 94.4 185 34.1
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 2.9e-17 94.0 217 33.2
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 2.9e-17 94.0 205 31.7
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 2.9e-17 94.0 187 31.6
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 6.5e-17 92.8 132 37.9
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 2.5e-16 90.9 204 30.9
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 5.5e-16 89.7 214 30.8
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 7.2e-16 89.4 183 33.3
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.6e-15 88.2 205 31.2
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 1.6e-15 88.2 201 35.3
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 2.1e-15 87.8 113 42.5
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 2.7e-15 87.4 148 38.5
Potri.017G036100 Populus trichocarpa HOM05D003174 ORTHO05D003439 3.6e-15 87.0 171 34.5
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 4.7e-15 86.7 185 30.8
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 4.7e-15 86.7 152 38.2
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 4.7e-15 86.7 209 29.2
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 7.9e-15 85.9 146 39.7
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 7.9e-15 85.9 155 36.1
QL09p046209 Quercus lobata HOM05D003174 ORTHO05D003439 1.0e-14 85.5 130 39.2
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 1.4e-14 85.1 242 29.3
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 1.8e-14 84.7 130 40.0
Prupe.1G188100 Prunus persica HOM05D003174 ORTHO05D003439 1.8e-14 84.7 143 37.1
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 2.3e-14 84.3 107 44.9
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 3.0e-14 84.0 121 42.1
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 3.0e-14 84.0 121 42.1
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 3.0e-14 84.0 135 39.3
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 3.0e-14 84.0 132 39.4
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 3.9e-14 83.6 107 41.1
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 3.9e-14 83.6 125 40.0
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 3.9e-14 83.6 116 43.1
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 3.9e-14 83.6 102 44.1
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 3.9e-14 83.6 102 44.1
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 6.7e-14 82.8 107 41.1
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 8.8e-14 82.4 204 29.4
SHI29135 Sapria himalayana HOM05D003174 ORTHO05D003439 8.8e-14 82.4 146 39.0
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 1.1e-13 82.0 106 41.5
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 1.1e-13 82.0 130 36.9
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 1.5e-13 81.6 178 29.8
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 2.0e-13 81.3 122 40.2
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 2.6e-13 80.9 111 40.5
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 2.6e-13 80.9 107 40.2
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 4.4e-13 80.1 121 40.5
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 4.4e-13 80.1 103 42.7
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 4.4e-13 80.1 103 43.7
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 4.4e-13 80.1 104 39.4
Medtr5g040080 Medicago truncatula HOM05D003174 ORTHO05D003439 5.7e-13 79.7 128 36.7
Medtr7g039520 Medicago truncatula HOM05D003174 ORTHO05D003439 5.7e-13 79.7 128 36.7
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 7.4e-13 79.3 121 40.5
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 7.4e-13 79.3 103 41.7
ECA233G3488 Erigeron canadensis HOM05D003174 ORTHO05D003439 9.7e-13 79.0 184 32.6
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 9.7e-13 79.0 134 37.3
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 9.7e-13 79.0 171 35.1
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 9.7e-13 79.0 111 40.5
Sabra07G0100600 Salix brachista HOM05D003174 ORTHO05D003439 1.3e-12 78.6 219 30.6
PGSC0003DMG400027274 Solanum tuberosum HOM05D003174 ORTHO05D003439 1.7e-12 78.2 152 31.6
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 2.2e-12 77.8 103 40.8
Medtr1g069020 Medicago truncatula HOM05D003174 ORTHO05D003439 2.2e-12 77.8 102 38.2
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 2.2e-12 77.8 133 37.6
Aa31LG2G10940 Aethionema arabicum HOM05D003174 ORTHO05D003439 3.7e-12 77.0 182 29.7
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 3.7e-12 77.0 210 31.0
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 4.8e-12 76.6 105 38.1
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 4.8e-12 76.6 116 38.8
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 4.8e-12 76.6 99 42.4
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 6.3e-12 76.3 99 39.4
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 6.3e-12 76.3 102 42.2
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 6.3e-12 76.3 139 34.5
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 1.1e-11 75.5 134 34.3
PSO675G7155 Papaver somniferum HOM05D003174 ORTHO05D003439 1.1e-11 75.5 123 38.2
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 1.4e-11 75.1 145 35.2
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 2.4e-11 74.3 99 42.4
TPR.G37089 Trifolium pratense HOM05D003174 ORTHO05D003439 2.4e-11 74.3 130 36.2
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 4.1e-11 73.6 129 39.5
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 4.1e-11 73.6 129 39.5
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 4.1e-11 73.6 136 34.6
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 4.1e-11 73.6 130 36.2
TPR.G29857 Trifolium pratense HOM05D003174 ORTHO05D003439 4.1e-11 73.6 95 40.0
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 5.3e-11 73.2 97 42.3
Phvul.007G157300 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 5.3e-11 73.2 146 32.2
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 7.0e-11 72.8 151 34.4
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 9.1e-11 72.4 129 33.3
Psat2g183360 Pisum sativum HOM05D003174 ORTHO05D003439 1.2e-10 72.0 133 31.6
THA.LOC104816287 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 1.2e-10 72.0 101 39.6
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 1.6e-10 71.6 112 38.4
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 1.6e-10 71.6 104 36.5
SHI12657 Sapria himalayana HOM05D003174 ORTHO05D003439 1.6e-10 71.6 67 49.3
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 2.0e-10 71.2 120 35.0
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 2.0e-10 71.2 135 36.3
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 2.6e-10 70.9 139 34.5
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 4.5e-10 70.1 100 36.0
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 7.7e-10 69.3 150 32.7
DCAR_025649 Daucus carota HOM05D003174 ORTHO05D003439 7.7e-10 69.3 209 28.2
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 1.0e-09 68.9 126 34.9
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 1.3e-09 68.6 125 34.4
Phvul.011G086100 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 2.2e-09 67.8 136 33.1
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 2.9e-09 67.4 138 34.8
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 2.9e-09 67.4 128 35.9
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 3.8e-09 67.0 132 35.6
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 3.8e-09 67.0 103 34.0
arahy.Tifrunner.gnm1.ann1.T81LQ1 Arachis hypogaea HOM05D003174 ORTHO05D003439 5.0e-09 66.6 149 33.6
CANSAT21G1894 Cannabis sativa HOM05D003174 ORTHO05D003439 5.0e-09 66.6 126 33.3
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 5.0e-09 66.6 149 33.6
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 5.0e-09 66.6 145 35.9
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 6.5e-09 66.2 128 35.9
TWI53G0288 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 6.5e-09 66.2 133 34.6
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 8.5e-09 65.9 75 44.0
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 8.5e-09 65.9 383 23.5
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 8.5e-09 65.9 118 35.6
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 8.5e-09 65.9 185 30.3
arahy.Tifrunner.gnm1.ann1.T4VAVP Arachis hypogaea HOM05D003174 ORTHO05D003439 1.1e-08 65.5 145 34.5
ECA233G2094 Erigeron canadensis HOM05D003174 ORTHO05D003439 1.1e-08 65.5 107 35.5
HanXRQChr08g0226171 Helianthus annuus HOM05D003174 ORTHO05D003439 1.1e-08 65.5 146 28.8
arahy.Tifrunner.gnm1.ann1.7EM6TL Arachis hypogaea HOM05D003174 ORTHO05D003439 1.5e-08 65.1 151 33.1
FAN09G4813 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.9e-08 64.7 175 29.1
Sp6g39990 Schrenkiella parvula HOM05D003174 ORTHO05D003439 1.9e-08 64.7 106 36.8
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 2.5e-08 64.3 140 32.9
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 4.2e-08 63.5 71 43.7
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 5.5e-08 63.2 64 43.8
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 7.2e-08 62.8 66 45.5
Thhalv10015290m.g Eutrema salsugineum HOM05D003174 ORTHO05D003439 7.2e-08 62.8 140 33.6
Aqoxy4G02973 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 9.4e-08 62.4 115 37.4
FAN05G5174 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.2e-07 62.0 113 36.3
Atru.chr3.120 Acer truncatum HOM05D003174 ORTHO05D003439 1.6e-07 61.6 121 32.2
BcaB05g21888 Brassica carinata HOM05D003174 ORTHO05D003439 1.6e-07 61.6 102 41.2
CARHR210840 Cardamine hirsuta HOM05D003174 ORTHO05D003439 2.1e-07 61.2 100 38.0
AT5G02520 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 2.7e-07 60.8 144 34.0
HPP92_001613 Vanilla planifolia HOM05D003174 ORTHO05D003439 2.7e-07 60.8 102 38.2
arahy.Tifrunner.gnm1.ann1.D9JBU2 Arachis hypogaea HOM05D003174 ORTHO05D003439 4.7e-07 60.1 144 30.6
FvH4_6g25230 Fragaria vesca HOM05D003174 ORTHO05D003439 6.1e-07 59.7 113 34.5
TPR.G23103 Trifolium pratense HOM05D003174 ORTHO05D003439 8.0e-07 59.3 82 37.8
BcaC03g13058 Brassica carinata HOM05D003174 ORTHO05D003439 1.4e-06 58.5 102 40.2
C02p00500 Brassica napus HOM05D003174 ORTHO05D003439 1.8e-06 58.2 103 39.8
BraA02t04720Z Brassica rapa HOM05D003174 ORTHO05D003439 2.3e-06 57.8 103 38.8
Cc06_g02840 Coffea canephora HOM05D003174 ORTHO05D003439 4.0e-06 57.0 93 39.8
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 6.7e-06 56.2 173 27.7
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 8.8e-06 55.8 88 37.5
Os04g0347900 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 8.8e-06 55.8 98 34.7


User provided reference genes

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