Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 7.4e-65 250.8 163 100.0
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 4.0e-18 95.5 88 51.1
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 1.5e-17 93.6 108 50.9
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 3.4e-17 92.4 107 49.5
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 4.9e-16 88.6 84 41.7
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 2.0e-14 83.2 93 47.3
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 2.7e-14 82.8 115 41.7
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 4.6e-14 82.0 100 44.0
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 7.8e-14 81.3 109 43.1
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 2.3e-13 79.7 87 42.5
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 3.0e-13 79.3 100 41.0
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 8.6e-13 77.8 99 39.4
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 8.6e-13 77.8 80 48.8
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 1.1e-12 77.4 102 38.2
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 1.9e-12 76.6 92 38.0
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 1.9e-12 76.6 133 47.4
AUR62013490 Chenopodium quinoa HOM05D003899 ORTHO05D003655 3.3e-12 75.9 114 36.0
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 4.3e-12 75.5 104 38.5
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 4.3e-12 75.5 83 45.8
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 4.3e-12 75.5 73 47.9
AUR62026786 Chenopodium quinoa HOM05D003899 ORTHO05D003655 5.6e-12 75.1 116 35.3
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 5.6e-12 75.1 81 40.7
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 5.6e-12 75.1 81 40.7
AUR62007209 Chenopodium quinoa HOM05D003899 ORTHO05D003655 7.3e-12 74.7 103 43.7
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 7.3e-12 74.7 63 55.6
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 9.5e-12 74.3 74 51.4
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 9.5e-12 74.3 104 37.5
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.2e-11 73.9 81 45.7
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.2e-11 73.9 55 58.2
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.6e-11 73.6 81 44.4
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.6e-11 73.6 101 41.6
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 2.1e-11 73.2 72 45.8
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 2.8e-11 72.8 89 43.8
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 2.8e-11 72.8 76 46.1
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.8e-11 72.8 73 47.9
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 3.6e-11 72.4 73 46.6
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 3.6e-11 72.4 73 46.6
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 4.7e-11 72.0 98 40.8
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 6.2e-11 71.6 86 40.7
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 8.0e-11 71.2 96 40.6
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 1.4e-10 70.5 54 46.3
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 1.8e-10 70.1 90 41.1
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 1.8e-10 70.1 107 42.1
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 1.8e-10 70.1 94 40.4
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 2.3e-10 69.7 74 44.6
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.3e-10 69.7 74 44.6
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.3e-10 69.7 74 44.6
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 2.3e-10 69.7 75 49.3
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 2.3e-10 69.7 80 50.0
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 3.1e-10 69.3 47 59.6
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 4.0e-10 68.9 73 47.9
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 4.0e-10 68.9 73 47.9
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 4.0e-10 68.9 159 45.3
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 4.0e-10 68.9 105 38.1
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 4.0e-10 68.9 110 40.0
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 4.0e-10 68.9 74 50.0
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 5.2e-10 68.6 99 38.4
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 5.2e-10 68.6 84 42.9
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 5.2e-10 68.6 93 37.6
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 6.8e-10 68.2 73 47.9
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 6.8e-10 68.2 73 47.9
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 6.8e-10 68.2 73 47.9
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 6.8e-10 68.2 93 36.6
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 6.8e-10 68.2 74 50.0
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 6.8e-10 68.2 110 40.9
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 8.9e-10 67.8 76 43.4
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 1.2e-09 67.4 85 41.2
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 1.5e-09 67.0 95 38.9
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 1.5e-09 67.0 63 50.8
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 2.0e-09 66.6 80 42.5
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 2.6e-09 66.2 64 54.7
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 2.6e-09 66.2 73 47.9
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.6e-09 66.2 74 40.5
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 2.6e-09 66.2 93 45.2
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 3.4e-09 65.9 64 51.6
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 3.4e-09 65.9 79 41.8
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 3.4e-09 65.9 87 39.1
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 3.4e-09 65.9 96 38.5
Sc16g0003890 Simmondsia chinensis HOM05D003899 ORTHO05D003655 3.4e-09 65.9 59 42.4
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 4.4e-09 65.5 49 53.1
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 5.8e-09 65.1 80 41.2
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 5.8e-09 65.1 47 57.4
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 7.5e-09 64.7 70 42.9
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 7.5e-09 64.7 76 43.4
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 9.8e-09 64.3 72 43.1
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 9.8e-09 64.3 82 37.8
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.3e-08 63.9 80 41.2
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 1.7e-08 63.5 91 41.8
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 1.7e-08 63.5 81 34.6
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 2.9e-08 62.8 94 38.3
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 2.9e-08 62.8 72 44.4
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 3.7e-08 62.4 64 43.8
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 3.7e-08 62.4 73 42.5
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 3.7e-08 62.4 63 50.8
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 3.7e-08 62.4 91 37.4
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 4.9e-08 62.0 92 32.6
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 4.9e-08 62.0 73 45.2
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 4.9e-08 62.0 89 37.1
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 4.9e-08 62.0 88 38.6
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 4.9e-08 62.0 62 46.8
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 6.4e-08 61.6 63 50.8
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 8.3e-08 61.2 92 34.8
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 8.3e-08 61.2 91 38.5
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 8.3e-08 61.2 106 34.9
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 8.3e-08 61.2 82 36.6
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 8.3e-08 61.2 76 40.8
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 1.1e-07 60.8 74 39.2
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.4e-07 60.5 97 37.1
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 1.9e-07 60.1 77 36.4
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 2.4e-07 59.7 53 50.9
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 2.4e-07 59.7 95 40.0
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 3.2e-07 59.3 64 50.0
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 3.2e-07 59.3 134 43.3
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 4.1e-07 58.9 92 37.0
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 4.1e-07 58.9 59 42.4
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 4.1e-07 58.9 77 36.4
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 7.1e-07 58.2 52 38.5
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 9.2e-07 57.8 87 32.2
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 9.2e-07 57.8 95 36.8
CAN.G1012.7 Capsicum annuum HOM05D003899 ORTHO05D003655 1.6e-06 57.0 64 43.8
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 1.6e-06 57.0 60 43.3
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 1.6e-06 57.0 88 37.5
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.1e-06 56.6 87 36.8
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 2.7e-06 56.2 80 32.5
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 2.7e-06 56.2 58 44.8
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 3.5e-06 55.8 68 39.7
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 3.5e-06 55.8 84 38.1
HPP92_002045 Vanilla planifolia HOM05D003899 ORTHO05D003655 3.5e-06 55.8 57 40.4
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 4.6e-06 55.5 93 36.6
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 4.6e-06 55.5 58 43.1
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 6.0e-06 55.1 68 44.1
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 6.0e-06 55.1 86 34.9
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 6.0e-06 55.1 91 35.2


User provided reference genes

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