Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 2.8e-252 874.8 440 100.0
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 7.1e-187 657.5 451 74.7
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 1.1e-184 650.2 451 73.8
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 6.9e-182 641.0 449 73.3
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 1.4e-179 633.3 449 71.9
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 1.5e-176 623.2 455 69.0
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.9e-176 622.9 455 68.8
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 7.4e-176 620.9 454 69.4
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 2.8e-175 619.0 454 68.9
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 2.8e-175 619.0 454 69.2
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 2.8e-175 619.0 454 69.4
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 2.0e-173 612.8 452 69.5
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 3.4e-173 612.1 456 67.8
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 1.3e-172 610.1 456 68.9
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 1.7e-172 609.8 454 69.2
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 2.2e-172 609.4 455 67.9
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 2.9e-172 609.0 454 67.6
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 6.4e-172 607.8 453 69.3
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 6.4e-172 607.8 456 67.8
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 1.4e-171 606.7 451 68.5
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.9e-171 606.3 452 69.9
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 2.5e-171 605.9 452 69.0
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 4.2e-171 605.1 452 69.0
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 2.7e-170 602.4 455 68.1
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 3.5e-170 602.1 454 67.4
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 3.5e-170 602.1 457 68.5
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 4.6e-170 601.7 453 68.2
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 7.9e-170 600.9 455 67.9
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.3e-169 600.1 448 68.1
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 1.8e-169 599.7 448 67.9
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 1.8e-169 599.7 454 67.0
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 3.9e-169 598.6 456 67.1
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 5.1e-169 598.2 454 67.2
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 5.1e-169 598.2 454 67.2
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 6.7e-169 597.8 448 67.6
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 8.7e-169 597.4 453 67.1
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.9e-168 596.3 454 67.0
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.5e-168 595.9 448 67.4
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.5e-168 595.9 448 67.6
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.5e-168 595.9 459 67.5
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 5.6e-168 594.7 454 66.5
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 1.6e-167 593.2 454 67.6
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 1.6e-167 593.2 454 67.6
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 1.6e-167 593.2 452 66.4
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 2.1e-167 592.8 401 74.1
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 3.7e-167 592.0 452 66.6
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 1.8e-166 589.7 452 66.4
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.2e-165 587.0 452 66.2
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 1.2e-165 587.0 449 66.1
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 2.0e-165 586.3 454 65.9
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 3.4e-165 585.5 449 65.9
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 3.4e-165 585.5 457 66.5
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 7.6e-165 584.3 453 66.7
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 1.7e-164 583.2 447 66.2
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.7e-164 583.2 458 65.3
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 8.4e-164 580.9 451 65.6
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 8.4e-164 580.9 455 66.4
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 8.4e-164 580.9 446 66.6
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 1.1e-163 580.5 455 65.1
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.1e-163 580.5 452 65.5
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.4e-163 580.1 451 65.4
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 3.2e-163 578.9 455 66.4
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 3.2e-163 578.9 453 65.3
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 4.2e-163 578.6 453 65.8
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 4.2e-163 578.6 454 65.4
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 5.5e-163 578.2 456 64.9
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 4.6e-162 575.1 455 65.5
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 4.6e-162 575.1 455 65.5
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 2.3e-161 572.8 429 68.5
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 2.3e-161 572.8 451 64.5
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 3.9e-161 572.0 451 64.3
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 5.1e-161 571.6 452 64.6
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 6.7e-161 571.2 454 64.5
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 8.7e-161 570.9 447 66.0
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.1e-160 570.5 466 63.3
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 2.5e-160 569.3 454 65.0
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 7.4e-160 567.8 460 63.5
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.4e-158 563.5 458 64.2
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 1.8e-158 563.1 457 62.6
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.4e-158 562.8 444 64.9
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 4.1e-158 562.0 455 64.4
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 6.9e-158 561.2 456 64.0
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 9.0e-158 560.8 445 63.6
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 4.5e-157 558.5 464 62.5
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 7.7e-157 557.8 454 63.4
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 1.7e-156 556.6 455 63.7
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 3.8e-156 555.4 448 62.1
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 3.8e-156 555.4 459 62.3
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.9e-155 553.1 398 68.3
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 3.2e-155 552.4 457 62.6
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 9.4e-155 550.8 449 63.3
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 1.2e-154 550.4 461 61.2
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 1.0e-153 547.4 455 61.1
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 2.3e-153 546.2 445 62.2
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 3.0e-153 545.8 452 61.3
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 6.7e-153 544.7 454 62.1
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 1.1e-152 543.9 452 61.1
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 1.1e-152 543.9 452 61.1
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 2.0e-152 543.1 451 60.8
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 2.5e-152 542.7 449 63.5
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 9.7e-152 540.8 446 62.1
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 1.3e-151 540.4 447 62.6
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 1.3e-151 540.4 444 62.2
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 1.7e-151 540.0 453 61.1
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 4.8e-151 538.5 447 62.9
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 8.2e-151 537.7 449 60.8
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 4.1e-150 535.4 446 62.6
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 4.1e-150 535.4 455 62.6
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 5.3e-150 535.0 454 62.1
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 3.4e-149 532.3 370 72.4
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 1.3e-148 530.4 452 61.5
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 7.2e-147 524.6 459 59.9
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 4.7e-146 521.9 362 70.7
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 1.8e-145 520.0 454 60.1
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 7.4e-144 514.6 455 60.0
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 1.1e-136 490.7 456 57.7
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 1.3e-135 487.3 316 75.0
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 2.7e-130 469.5 435 55.6
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 1.4e-129 467.2 310 73.5
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 2.3e-129 466.5 457 52.5
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 5.7e-128 461.8 301 73.8
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 1.2e-125 454.1 310 72.6
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 2.0e-125 453.4 463 53.8
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 5.0e-124 448.7 294 73.5
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 3.2e-123 446.0 455 51.4
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 4.2e-123 445.7 368 62.0
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 7.2e-123 444.9 458 51.1
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.8e-121 440.3 299 71.6
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 1.2e-120 437.6 298 70.8
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 2.8e-114 416.4 475 47.6
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 1.2e-104 384.4 298 67.8
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 4.4e-104 382.5 499 45.5
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 2.8e-98 363.2 255 69.0
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 2.8e-98 363.2 255 69.0
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.1e-65 255.0 249 59.8
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 6.2e-58 229.2 426 34.5
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 2.7e-29 134.0 193 43.5
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 7.0e-25 119.4 87 66.7
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 1.7e-23 114.8 150 42.7
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 9.4e-22 109.0 129 45.7
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.3e-18 98.6 93 63.4
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 1.2e-08 65.5 99 38.4


User provided reference genes

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