Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 3.7e-37 157.5 70 100.0
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 8.5e-34 146.4 69 92.8
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 9.3e-33 142.9 70 87.1
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.2e-32 142.5 70 90.0
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.6e-32 142.1 70 88.6
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 2.1e-32 141.7 70 90.0
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 2.1e-32 141.7 70 88.6
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 2.1e-32 141.7 70 84.3
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 2.1e-32 141.7 70 85.7
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 2.7e-32 141.4 70 85.7
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 3.6e-32 141.0 70 85.7
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 3.6e-32 141.0 69 87.0
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 3.6e-32 141.0 70 85.7
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 3.6e-32 141.0 69 85.5
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 4.6e-32 140.6 69 89.9
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 7.9e-32 139.8 69 85.5
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 7.9e-32 139.8 70 84.3
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 7.9e-32 139.8 69 85.5
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.0e-31 139.4 69 89.9
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.0e-31 139.4 70 88.6
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 1.0e-31 139.4 70 88.6
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 1.4e-31 139.0 69 85.5
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 1.4e-31 139.0 69 85.5
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 1.4e-31 139.0 69 85.5
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 1.4e-31 139.0 70 85.7
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 1.4e-31 139.0 70 88.6
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 1.8e-31 138.7 70 85.7
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 2.3e-31 138.3 69 84.1
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 2.3e-31 138.3 70 88.6
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 3.0e-31 137.9 70 87.1
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 3.9e-31 137.5 69 88.4
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.9e-31 137.5 69 88.4
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 5.1e-31 137.1 70 87.1
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.1e-31 137.1 70 87.1
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.1e-31 137.1 70 87.1
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 5.1e-31 137.1 69 87.0
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 6.7e-31 136.7 70 82.9
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 6.7e-31 136.7 70 82.9
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 6.7e-31 136.7 70 84.3
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 6.7e-31 136.7 70 82.9
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 8.8e-31 136.3 69 82.6
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 8.8e-31 136.3 69 87.0
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 8.8e-31 136.3 70 84.3
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 1.1e-30 136.0 69 85.5
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 1.1e-30 136.0 70 85.7
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 1.1e-30 136.0 70 85.7
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 1.1e-30 136.0 68 86.8
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.1e-30 136.0 70 85.7
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 1.1e-30 136.0 70 82.9
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 1.5e-30 135.6 69 84.1
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.9e-30 135.2 70 85.7
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 2.5e-30 134.8 69 84.1
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 3.3e-30 134.4 70 82.9
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 4.3e-30 134.0 68 83.8
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 4.3e-30 134.0 69 84.1
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 4.3e-30 134.0 70 81.4
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 7.4e-30 133.3 70 84.3
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 7.4e-30 133.3 70 84.3
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 7.4e-30 133.3 70 82.9
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 7.4e-30 133.3 70 81.4
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 7.4e-30 133.3 70 82.9
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 9.7e-30 132.9 70 81.4
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 9.7e-30 132.9 70 81.4
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 9.7e-30 132.9 70 82.9
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 9.7e-30 132.9 70 81.4
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 9.7e-30 132.9 70 84.3
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 1.3e-29 132.5 69 81.2
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 1.3e-29 132.5 69 81.2
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 1.3e-29 132.5 70 81.4
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 1.7e-29 132.1 70 84.3
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 1.7e-29 132.1 69 82.6
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.7e-29 132.1 70 82.9
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 2.2e-29 131.7 68 82.4
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 2.2e-29 131.7 68 83.8
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 2.2e-29 131.7 70 82.9
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.2e-29 131.7 70 84.3
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 2.8e-29 131.3 70 82.9
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 2.8e-29 131.3 70 81.4
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 2.8e-29 131.3 69 82.6
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 4.8e-29 130.6 69 81.2
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 6.3e-29 130.2 70 80.0
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 8.2e-29 129.8 70 78.6
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 1.1e-28 129.4 70 80.0
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 1.1e-28 129.4 70 80.0
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 1.1e-28 129.4 68 77.9
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 1.4e-28 129.0 69 82.6
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 1.4e-28 129.0 70 80.0
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 1.8e-28 128.6 68 82.4
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 1.8e-28 128.6 70 77.1
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 2.4e-28 128.3 70 80.0
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 2.4e-28 128.3 70 80.0
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 2.4e-28 128.3 69 79.7
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.1e-28 127.9 70 78.6
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.1e-28 127.9 70 78.6
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 4.1e-28 127.5 68 85.3
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 5.3e-28 127.1 70 81.4
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 5.3e-28 127.1 69 79.7
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 6.9e-28 126.7 69 76.8
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 9.1e-28 126.3 70 77.1
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 9.1e-28 126.3 70 78.6
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 9.1e-28 126.3 70 80.0
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.2e-27 125.9 71 76.1
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 1.2e-27 125.9 68 77.9
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 1.5e-27 125.6 60 86.7
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 1.5e-27 125.6 70 77.1
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 2.6e-27 124.8 70 75.7
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 2.6e-27 124.8 61 83.6
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 2.6e-27 124.8 70 77.1
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 3.4e-27 124.4 60 85.0
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 3.4e-27 124.4 70 77.1
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 4.5e-27 124.0 70 75.7
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 4.5e-27 124.0 60 88.3
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 5.9e-27 123.6 96 60.4
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 5.9e-27 123.6 96 60.4
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 5.9e-27 123.6 93 63.4
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 7.7e-27 123.2 65 81.5
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 7.7e-27 123.2 61 82.0
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 7.7e-27 123.2 70 80.0
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 7.7e-27 123.2 70 77.1
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 7.7e-27 123.2 70 77.1
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 7.7e-27 123.2 70 75.7
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 7.7e-27 123.2 70 74.3
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 1.0e-26 122.9 69 76.8
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 1.3e-26 122.5 70 77.1
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 1.3e-26 122.5 70 74.3
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.9e-26 121.3 70 74.3
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 2.9e-26 121.3 70 75.7
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 3.8e-26 120.9 97 58.8
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 5.0e-26 120.6 60 86.7
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 5.0e-26 120.6 60 85.0
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 6.5e-26 120.2 68 76.5
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 6.5e-26 120.2 70 78.6
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 6.5e-26 120.2 70 74.3
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 8.5e-26 119.8 70 75.7
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.1e-25 119.4 69 73.9
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 1.4e-25 119.0 70 72.9
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 1.4e-25 119.0 70 71.4
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 1.9e-25 118.6 70 71.4
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 2.5e-25 118.2 69 73.9
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 3.2e-25 117.9 68 76.5
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 3.2e-25 117.9 70 74.3
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 3.2e-25 117.9 70 74.3
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 4.2e-25 117.5 70 74.3
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 5.5e-25 117.1 59 86.4
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 7.2e-25 116.7 69 71.0
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 9.4e-25 116.3 59 84.7
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 9.4e-25 116.3 69 71.0
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.1e-24 115.2 61 82.0
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 2.7e-24 114.8 61 77.0
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 1.0e-23 112.8 70 74.3
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.0e-23 112.8 67 70.1
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 1.8e-23 112.1 72 70.8
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 3.9e-23 110.9 67 68.7
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 8.8e-23 109.8 70 71.4
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 8.8e-23 109.8 67 68.7
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.1e-22 109.4 70 70.0
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 1.1e-22 109.4 59 78.0
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.6e-22 108.2 70 70.0
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 9.7e-22 106.3 57 73.7
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.3e-21 105.9 65 69.2
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.3e-21 105.9 65 69.2
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 2.8e-21 104.8 60 71.7
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.8e-21 104.8 60 70.0
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 4.8e-21 104.0 99 52.5
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 4.1e-20 100.9 58 69.0
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 4.5e-19 97.4 71 62.0
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 2.2e-18 95.1 68 58.8
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 2.9e-18 94.7 57 64.9
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 5.0e-18 94.0 58 63.8
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 1.1e-17 92.8 58 65.5
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 2.5e-17 91.7 42 88.1
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 4.2e-17 90.9 49 69.4
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 7.2e-17 90.1 41 87.8
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 2.7e-16 88.2 68 58.8
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 4.4e-14 80.9 61 57.4
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 9.7e-14 79.7 43 79.1
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 9.7e-14 79.7 43 79.1
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 1.3e-13 79.3 70 55.7
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 3.7e-13 77.8 70 55.7
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 7.0e-12 73.6 70 54.3
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.5e-11 70.9 43 69.8
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 3.8e-10 67.8 34 70.6
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 1.9e-09 65.5 39 76.9
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 1.8e-07 58.9 68 47.1
Cfa005572 Carpinus fangiana HOM05D003896 ORTHO05D004517 4.0e-07 57.8 29 89.7


User provided reference genes

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