Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0004000 Simmondsia chinensis HOM05D006977 ORTHO05D008738 9.2e-113 410.2 205 100.0
AUR62007556 Chenopodium quinoa HOM05D006977 ORTHO05D008738 6.9e-44 181.4 193 52.3
Cfa004914 Carpinus fangiana HOM05D006977 ORTHO05D008738 1.2e-43 180.6 198 53.5
Haze_05149 Corylus avellana HOM05D006977 ORTHO05D008738 4.5e-43 178.7 178 55.1
GSVIVG01028248001 Vitis vinifera HOM05D006977 ORTHO05D008738 1.0e-42 177.6 189 52.9
AUR62020194 Chenopodium quinoa HOM05D006977 ORTHO05D008738 1.3e-42 177.2 158 57.6
Eucgr.A01003 Eucalyptus grandis HOM05D006977 ORTHO05D008738 3.8e-42 175.6 194 47.9
CSS0050251 Camellia sinensis var. sinensis HOM05D006977 ORTHO05D008738 3.2e-41 172.6 196 46.9
Dinv12080 Davidia involucrata HOM05D006977 ORTHO05D008738 7.2e-41 171.4 194 47.9
PGR042G1466 Punica granatum HOM05D006977 ORTHO05D008738 7.2e-41 171.4 185 50.3
Sabra14G0082500 Salix brachista HOM05D006977 ORTHO05D008738 3.6e-40 169.1 168 54.2
Prupe.3G002600 Prunus persica HOM05D006977 ORTHO05D008738 4.7e-40 168.7 172 52.3
Potri.014G112200 Populus trichocarpa HOM05D006977 ORTHO05D008738 6.1e-40 168.3 182 51.1
Atru.chr5.861 Acer truncatum HOM05D006977 ORTHO05D008738 1.0e-39 167.5 168 53.0
Ca_17328_v3 Cicer arietinum L. HOM05D006977 ORTHO05D008738 1.0e-39 167.5 204 49.0
Ciclev10022352m.g Citrus clementina HOM05D006977 ORTHO05D008738 1.0e-39 167.5 181 54.1
Hma1.2p1_0484F.1_g162990 Hydrangea macrophylla HOM05D006977 ORTHO05D008738 1.0e-39 167.5 213 43.7
QL05p057365 Quercus lobata HOM05D006977 ORTHO05D008738 1.4e-39 167.2 193 51.3
FAN23G2129 Fragaria x ananassa HOM05D006977 ORTHO05D008738 1.8e-39 166.8 202 46.5
Thecc.01G325400 Theobroma cacao HOM05D006977 ORTHO05D008738 1.8e-39 166.8 196 49.5
TWI81G0461 Tripterygium wilfordii HOM05D006977 ORTHO05D008738 3.9e-39 165.6 167 51.5
Gohir.D11G109500 Gossypium hirsutum HOM05D006977 ORTHO05D008738 6.7e-39 164.9 194 50.5
Gorai.007G117100 Gossypium raimondii HOM05D006977 ORTHO05D008738 6.7e-39 164.9 194 50.5
TAR362G0624 Trochodendron aralioides HOM05D006977 ORTHO05D008738 6.7e-39 164.9 182 49.5
FAN19G2776 Fragaria x ananassa HOM05D006977 ORTHO05D008738 1.5e-38 163.7 191 46.6
MBI19_g30288_MAGBIO Magnolia biondii HOM05D006977 ORTHO05D008738 1.5e-38 163.7 161 52.2
Manes.05G008900 Manihot esculenta HOM05D006977 ORTHO05D008738 1.5e-38 163.7 178 51.7
FAN26G0658 Fragaria x ananassa HOM05D006977 ORTHO05D008738 2.6e-38 162.9 202 45.0
Gohir.A11G104700 Gossypium hirsutum HOM05D006977 ORTHO05D008738 3.3e-38 162.5 194 50.0
Cc04_g01560 Coffea canephora HOM05D006977 ORTHO05D008738 4.4e-38 162.2 182 47.3
Glyma.04G053700 Glycine max HOM05D006977 ORTHO05D008738 4.4e-38 162.2 193 44.6
MSTRG.6995 Avicennia marina HOM05D006977 ORTHO05D008738 7.4e-38 161.4 164 51.8
VMungo0720G2811 Vigna mungo HOM05D006977 ORTHO05D008738 7.4e-38 161.4 193 46.1
Migut.M01655 Erythranthe guttata HOM05D006977 ORTHO05D008738 1.3e-37 160.6 173 50.3
Lj5g0006261 Lotus japonicus HOM05D006977 ORTHO05D008738 1.3e-37 160.6 191 47.6
Nn4g24845 Nelumbo nucifera HOM05D006977 ORTHO05D008738 1.3e-37 160.6 182 46.7
Glyma.10G137900 Glycine max HOM05D006977 ORTHO05D008738 2.2e-37 159.8 193 44.6
THA.LOC104799825 Tarenaya hassleriana HOM05D006977 ORTHO05D008738 4.8e-37 158.7 182 47.3
Hund02455 Selenicereus undatus HOM05D006977 ORTHO05D008738 8.2e-37 157.9 194 45.4
Duzib133G0680 Durio zibethinus HOM05D006977 ORTHO05D008738 1.1e-36 157.5 196 48.5
AL6G51510 Arabidopsis lyrata HOM05D006977 ORTHO05D008738 1.4e-36 157.1 184 45.1
CiPaw.08G082500 Carya illinoinensis HOM05D006977 ORTHO05D008738 1.4e-36 157.1 198 47.0
FAN28G2841 Fragaria x ananassa HOM05D006977 ORTHO05D008738 1.4e-36 157.1 202 45.5
RcHm_v2.0_Chr3g0485771 Rosa chinensis HOM05D006977 ORTHO05D008738 1.4e-36 157.1 198 46.0
COL.COLO4_23128 Corchorus olitorius HOM05D006977 ORTHO05D008738 1.8e-36 156.8 197 49.2
Psat7g015240 Pisum sativum HOM05D006977 ORTHO05D008738 1.8e-36 156.8 194 50.0
Cpa.g.sc57.16 Carica papaya HOM05D006977 ORTHO05D008738 3.1e-36 156.0 171 50.9
MD09G1290400 Malus domestica HOM05D006977 ORTHO05D008738 3.1e-36 156.0 198 47.5
DCAR_012297 Daucus carota HOM05D006977 ORTHO05D008738 4.1e-36 155.6 187 46.5
Phvul.L002843 Phaseolus vulgaris HOM05D006977 ORTHO05D008738 4.1e-36 155.6 193 45.1
Cpa.g.sc112.76 Carica papaya HOM05D006977 ORTHO05D008738 5.3e-36 155.2 162 51.9
ECA236G2063 Erigeron canadensis HOM05D006977 ORTHO05D008738 5.3e-36 155.2 191 45.5
Lsat_1_v5_gn_7_107761 Lactuca sativa HOM05D006977 ORTHO05D008738 7.0e-36 154.8 187 45.5
Thhalv10029024m.g Eutrema salsugineum HOM05D006977 ORTHO05D008738 9.1e-36 154.5 183 44.3
EL10Ac6g15579 Beta vulgaris HOM05D006977 ORTHO05D008738 2.0e-35 153.3 183 48.1
Carub.0006s3543 Capsella rubella HOM05D006977 ORTHO05D008738 2.6e-35 152.9 182 44.0
Medtr8g103265 Medicago truncatula HOM05D006977 ORTHO05D008738 2.6e-35 152.9 159 50.9
Actinidia25872 Actinidia chinensis HOM05D006977 ORTHO05D008738 3.5e-35 152.5 199 45.7
HanXRQChr15g0493961 Helianthus annuus HOM05D006977 ORTHO05D008738 3.5e-35 152.5 181 47.5
Rhsim01G0293500 Rhododendron simsii HOM05D006977 ORTHO05D008738 3.5e-35 152.5 172 45.9
PGSC0003DMG400001120 Solanum tuberosum HOM05D006977 ORTHO05D008738 3.5e-35 152.5 153 52.9
PSO170G4516 Papaver somniferum HOM05D006977 ORTHO05D008738 5.9e-35 151.8 157 49.0
AT4G01790 Arabidopsis thaliana HOM05D006977 ORTHO05D008738 1.0e-34 151.0 184 45.1
PSO357G0421 Papaver somniferum HOM05D006977 ORTHO05D008738 3.8e-34 149.1 166 50.0
ClCG01G007180 Citrullus lanatus HOM05D006977 ORTHO05D008738 6.5e-34 148.3 170 48.2
Aa31LG5G1570 Aethionema arabicum HOM05D006977 ORTHO05D008738 8.5e-34 147.9 187 42.8
Duzib268G1723 Durio zibethinus HOM05D006977 ORTHO05D008738 8.5e-34 147.9 191 47.1
BolC3t16121H Brassica oleracea HOM05D006977 ORTHO05D008738 1.1e-33 147.5 183 44.8
Sopen01g030650 Solanum pennellii HOM05D006977 ORTHO05D008738 2.5e-33 146.4 153 51.0
BcaC01g06803 Brassica carinata HOM05D006977 ORTHO05D008738 3.2e-33 146.0 159 49.1
FvH4_1g26230 Fragaria vesca HOM05D006977 ORTHO05D008738 3.2e-33 146.0 159 47.2
Lalb_Chr11g0071671 Lupinus albus HOM05D006977 ORTHO05D008738 3.2e-33 146.0 189 45.0
Oeu031543.1 Olea europaea HOM05D006977 ORTHO05D008738 3.2e-33 146.0 158 50.0
Solyc01g080830.3 Solanum lycopersicum HOM05D006977 ORTHO05D008738 4.2e-33 145.6 153 50.3
C03p38480 Brassica napus HOM05D006977 ORTHO05D008738 5.5e-33 145.2 183 44.3
Sed0019401 Sechium edule HOM05D006977 ORTHO05D008738 9.4e-33 144.4 186 43.5
BcaB01g02378 Brassica carinata HOM05D006977 ORTHO05D008738 1.2e-32 144.1 170 47.1
Duzib268G1378 Durio zibethinus HOM05D006977 ORTHO05D008738 1.2e-32 144.1 155 50.3
CsaV3_5G018620 Cucumis sativus L. HOM05D006977 ORTHO05D008738 1.6e-32 143.7 171 48.5
CARHR249760 Cardamine hirsuta HOM05D006977 ORTHO05D008738 3.6e-32 142.5 183 41.5
Sp3g31270 Schrenkiella parvula HOM05D006977 ORTHO05D008738 6.1e-32 141.7 171 44.4
SpUn0082_0020 Schrenkiella parvula HOM05D006977 ORTHO05D008738 6.1e-32 141.7 171 44.4
BraA03t12329Z Brassica rapa HOM05D006977 ORTHO05D008738 1.0e-31 141.0 183 43.2
arahy.Tifrunner.gnm1.ann1.KP3I1I Arachis hypogaea HOM05D006977 ORTHO05D008738 2.3e-31 139.8 153 50.3
SalBow5G4120 Salvia bowleyana HOM05D006977 ORTHO05D008738 2.3e-31 139.8 163 47.9
Aqoxy5G02822 Aquilegia oxysepala HOM05D006977 ORTHO05D008738 3.0e-31 139.4 144 47.9
A03p31490 Brassica napus HOM05D006977 ORTHO05D008738 3.0e-31 139.4 159 47.2
Peaxi162Scf00309g00082 Petunia axillaris HOM05D006977 ORTHO05D008738 3.0e-31 139.4 128 59.4
vmacro15094 Vaccinium macrocarpon HOM05D006977 ORTHO05D008738 5.2e-31 138.7 144 49.3
HPP92_012764 Vanilla planifolia HOM05D006977 ORTHO05D008738 8.8e-31 137.9 188 43.1
ATR0796G043 Amborella trichopoda HOM05D006977 ORTHO05D008738 1.2e-30 137.5 176 43.8
CiPaw.07G125600 Carya illinoinensis HOM05D006977 ORTHO05D008738 1.5e-30 137.1 198 47.0
MELO3C005192.2 Cucumis melo HOM05D006977 ORTHO05D008738 1.5e-30 137.1 171 45.6
arahy.Tifrunner.gnm1.ann1.PT1J72 Arachis hypogaea HOM05D006977 ORTHO05D008738 3.3e-30 136.0 153 50.3
CAN.G100.60 Capsicum annuum HOM05D006977 ORTHO05D008738 7.5e-30 134.8 127 54.3
Zm00001eb328690 Zea mays HOM05D006977 ORTHO05D008738 2.8e-29 132.9 159 42.8
Os07g0636400 Oryza sativa ssp. japonica HOM05D006977 ORTHO05D008738 6.3e-29 131.7 186 39.8
Duzib268G1823 Durio zibethinus HOM05D006977 ORTHO05D008738 1.1e-28 131.0 155 49.0
Lj1A7G42 Lonicera japonica HOM05D006977 ORTHO05D008738 1.4e-28 130.6 136 52.2
TPR.G23504 Trifolium pratense HOM05D006977 ORTHO05D008738 5.3e-28 128.6 128 53.1
SGA_v2.0_scaffold204G41642 Striga asiatica HOM05D006977 ORTHO05D008738 9.1e-28 127.9 157 45.9
unitig_8.g4039 Utricularia gibba HOM05D006977 ORTHO05D008738 1.6e-27 127.1 166 43.4
CANSAT25G0488 Cannabis sativa HOM05D006977 ORTHO05D008738 5.0e-26 122.1 180 40.6
Nitab4.5_0003092g0050 Nicotiana tabacum HOM05D006977 ORTHO05D008738 2.3e-23 113.2 149 43.6
Sp6g01640 Schrenkiella parvula HOM05D006977 ORTHO05D008738 3.0e-23 112.8 124 46.0
Nitab4.5_0000222g0410 Nicotiana tabacum HOM05D006977 ORTHO05D008738 9.8e-22 107.8 118 49.2
MD17G1285100 Malus domestica HOM05D006977 ORTHO05D008738 4.5e-19 99.0 83 56.6
CDE02G1393 Ceratophyllum demersum HOM05D006977 ORTHO05D008738 1.1e-17 94.4 88 50.0
Pp3c20_22530 Physcomitrium patens HOM05D006977 ORTHO05D008738 2.6e-14 83.2 183 33.3
Mapoly0147s0029 Marchantia polymorpha HOM05D006977 ORTHO05D008738 7.5e-14 81.6 148 33.8
CDE04G2744 Ceratophyllum demersum HOM05D006977 ORTHO05D008738 1.3e-10 70.9 109 37.6
Duzib138G1646 Durio zibethinus HOM05D006977 ORTHO05D008738 1.5e-06 57.4 77 46.8


User provided reference genes

Program Settings