Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 2.6e-256 888.3 456 100.0
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 3.5e-189 665.2 452 71.0
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 1.0e-188 663.7 491 69.2
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 2.9e-183 645.6 454 69.8
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 1.3e-178 630.2 449 68.2
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 2.1e-178 629.4 413 72.4
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 4.8e-178 628.2 439 67.4
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 4.0e-177 625.2 453 66.9
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 1.2e-176 623.6 447 67.3
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 2.0e-176 622.9 456 66.9
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 2.6e-176 622.5 376 76.1
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 2.6e-176 622.5 416 71.6
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 5.8e-176 621.3 418 70.1
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 1.3e-175 620.2 381 75.1
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 1.3e-175 620.2 392 74.2
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 3.8e-175 618.6 418 70.3
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 1.9e-174 616.3 455 65.7
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 1.9e-174 616.3 452 66.2
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.5e-174 615.9 452 66.6
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 2.5e-174 615.9 452 66.4
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 3.2e-174 615.5 413 70.7
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 5.5e-174 614.8 420 70.5
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 5.5e-174 614.8 419 69.7
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 9.3e-174 614.0 454 65.6
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 9.3e-174 614.0 466 65.5
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 3.5e-173 612.1 420 70.0
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 4.6e-173 611.7 396 73.2
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 7.9e-173 610.9 366 78.1
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 7.9e-173 610.9 452 66.6
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 1.3e-172 610.1 451 64.3
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 2.3e-172 609.4 417 69.8
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 3.9e-172 608.6 417 68.8
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 3.9e-172 608.6 417 68.8
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 5.1e-172 608.2 379 73.4
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 6.7e-172 607.8 452 63.9
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 6.7e-172 607.8 447 65.5
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 6.7e-172 607.8 452 65.5
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 8.7e-172 607.4 409 72.9
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 4.3e-171 605.1 389 72.5
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 4.3e-171 605.1 383 72.6
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 5.7e-171 604.7 395 70.9
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 7.4e-171 604.4 383 72.3
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 1.3e-170 603.6 389 71.7
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 1.6e-170 603.2 415 68.2
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 3.7e-170 602.1 379 72.6
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 8.2e-170 600.9 400 69.0
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 3.1e-169 599.0 379 71.8
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 4.1e-169 598.6 374 73.3
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 5.3e-169 598.2 388 71.9
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 9.0e-169 597.4 460 64.3
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.5e-168 596.7 466 64.2
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 2.6e-168 595.9 526 58.0
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 3.4e-168 595.5 449 65.7
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 5.9e-168 594.7 415 69.9
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 5.9e-168 594.7 379 72.6
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 1.3e-167 593.6 378 72.2
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.7e-167 593.2 473 63.2
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 2.2e-167 592.8 418 66.0
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 3.8e-167 592.0 396 69.2
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 8.5e-167 590.9 374 73.3
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 1.1e-166 590.5 376 72.9
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 2.1e-165 586.3 378 71.7
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 2.7e-165 585.9 403 69.2
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 2.3e-164 582.8 416 67.1
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 3.9e-164 582.0 379 70.2
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 2.5e-163 579.3 378 70.6
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 2.5e-163 579.3 376 70.2
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 1.4e-161 573.5 378 70.4
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 5.3e-161 571.6 378 70.1
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 3.4e-160 568.9 378 69.0
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 4.5e-160 568.5 357 73.4
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 2.9e-159 565.8 361 71.2
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 2.9e-159 565.8 371 71.2
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 1.1e-158 563.9 454 59.7
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 1.4e-158 563.5 394 67.5
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 3.2e-158 562.4 388 67.5
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.2e-157 560.5 476 60.1
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 6.7e-156 554.7 405 65.2
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 7.4e-155 551.2 357 72.5
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 8.2e-154 547.7 420 64.8
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 1.1e-153 547.4 336 75.3
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 5.3e-153 545.0 412 63.3
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 9.1e-153 544.3 331 75.8
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 3.0e-148 529.3 371 69.0
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 3.3e-147 525.8 373 66.8
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 2.6e-144 516.2 397 66.0
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 8.5e-143 511.1 476 56.3
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 3.6e-141 505.8 301 77.4
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 4.0e-140 502.3 387 62.8
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 6.7e-140 501.5 433 57.7
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 2.8e-138 496.1 300 74.7
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 3.5e-136 489.2 372 62.9
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 1.8e-132 476.9 357 62.5
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 3.8e-127 459.1 465 52.5
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 1.5e-126 457.2 364 57.7
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 2.6e-123 446.4 383 61.6
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 9.8e-123 444.5 357 57.7
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 9.8e-123 444.5 355 62.3
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 1.5e-118 430.6 331 63.4
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.9e-118 430.3 338 58.3
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 4.0e-108 396.0 268 70.1
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 1.1e-92 344.7 350 48.3
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 7.6e-91 338.6 374 46.8
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 4.9e-90 335.9 267 61.0
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 3.9e-87 326.2 199 73.4
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 1.9e-86 323.9 199 72.9
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 5.6e-86 322.4 179 78.8
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 1.2e-83 314.7 242 62.8
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 1.9e-81 307.4 199 70.4
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 7.1e-81 305.4 199 69.8
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 7.8e-80 302.0 247 59.9
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 7.8e-80 302.0 247 59.9
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 1.3e-69 268.1 432 36.3
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 9.0e-68 261.9 329 42.2
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 2.5e-57 227.3 155 69.7
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 1.0e-55 221.9 163 66.3
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 1.3e-55 221.5 170 64.1
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 3.0e-55 220.3 133 75.2
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.2e-51 208.4 172 57.0
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 1.4e-44 184.9 106 79.2
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 2.9e-42 177.2 340 36.8
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 2.2e-37 161.0 98 69.4
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 2.1e-32 144.4 74 82.4
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 2.6e-30 137.5 339 30.7
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 2.4e-28 131.0 73 76.7
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 1.0e-18 99.0 55 72.7
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 6.5e-18 96.3 388 25.5
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 1.1e-17 95.5 95 52.6
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 4.0e-07 60.5 35 71.4


User provided reference genes

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