Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0003600 Simmondsia chinensis HOM05D001203 ORTHO05D388839 5.4e-63 244.2 128 100.0
Haze_00802 Corylus avellana HOM05D001203 ORTHO05D001059 1.5e-15 86.7 59 71.2
CSS0004119 Camellia sinensis var. sinensis HOM05D001203 ORTHO05D001059 3.2e-15 85.5 61 70.5
CSS0010454 Camellia sinensis var. sinensis HOM05D001203 ORTHO05D001059 3.2e-15 85.5 61 68.9
Sabra08G0075700 Salix brachista HOM05D000049 ORTHO05D000027 4.2e-15 85.1 59 67.8
Actinidia18495 Actinidia chinensis HOM05D001203 ORTHO05D001059 5.5e-15 84.7 58 72.4
Potri.008G100100 Populus trichocarpa HOM05D001203 ORTHO05D001059 1.6e-14 83.2 54 72.2
Prupe.1G109500 Prunus persica HOM05D001203 ORTHO05D001059 2.7e-14 82.4 54 72.2
Cc03_g00360 Coffea canephora HOM05D001203 ORTHO05D001059 3.6e-14 82.0 54 70.4
Dinv29535 Davidia involucrata HOM05D001203 ORTHO05D001059 3.6e-14 82.0 53 71.7
GSVIVG01017653001 Vitis vinifera HOM05D001203 ORTHO05D001059 3.6e-14 82.0 54 72.2
Ciclev10005618m.g Citrus clementina HOM05D001203 ORTHO05D001059 4.7e-14 81.6 54 72.2
Lj3A838T62 Lonicera japonica HOM05D001203 ORTHO05D001059 4.7e-14 81.6 56 69.6
MD13G1144600 Malus domestica HOM05D001203 ORTHO05D001059 6.1e-14 81.3 54 70.4
TAR636G0900 Trochodendron aralioides HOM05D001203 ORTHO05D001059 6.1e-14 81.3 54 70.4
AUR62030001 Chenopodium quinoa HOM05D001203 ORTHO05D001059 8.0e-14 80.9 51 74.5
Migut.N00016 Erythranthe guttata HOM05D001203 ORTHO05D001059 8.0e-14 80.9 54 70.4
Nn4g25449 Nelumbo nucifera HOM05D001203 ORTHO05D001059 8.0e-14 80.9 52 71.2
Rhsim04G0245800 Rhododendron simsii HOM05D001203 ORTHO05D001059 8.0e-14 80.9 51 72.5
Rhsim04G0246300 Rhododendron simsii HOM05D001203 ORTHO05D001059 8.0e-14 80.9 51 72.5
MSTRG.24835 Avicennia marina HOM05D001203 ORTHO05D001059 1.0e-13 80.5 54 66.7
ClCG05G006790 Citrullus lanatus HOM05D001203 ORTHO05D001059 1.0e-13 80.5 52 71.2
Os01g0329400 Oryza sativa ssp. japonica HOM05D001203 ORTHO05D001059 1.0e-13 80.5 54 70.4
Atru.chr4.3120 Acer truncatum HOM05D001203 ORTHO05D001059 1.4e-13 80.1 59 66.1
arahy.Tifrunner.gnm1.ann1.KK0LLK Arachis hypogaea HOM05D001203 ORTHO05D001059 1.4e-13 80.1 54 70.4
MELO3C006743.2 Cucumis melo HOM05D001203 ORTHO05D001059 1.4e-13 80.1 52 71.2
Oeu022693.2 Olea europaea HOM05D001203 ORTHO05D001059 1.4e-13 80.1 54 70.4
Sed0026566 Sechium edule HOM05D001203 ORTHO05D001059 1.4e-13 80.1 54 70.4
Zm00001eb340650 Zea mays HOM05D001203 ORTHO05D001059 1.4e-13 80.1 68 60.3
arahy.Tifrunner.gnm1.ann1.0WCZ1V Arachis hypogaea HOM05D001203 ORTHO05D001059 1.8e-13 79.7 63 65.1
Phvul.006G122100 Phaseolus vulgaris HOM05D001203 ORTHO05D001059 2.3e-13 79.3 64 62.5
SGA_v2.0_scaffold123G33427 Striga asiatica HOM05D001203 ORTHO05D001059 2.3e-13 79.3 54 68.5
TWI53G0223 Tripterygium wilfordii HOM05D001203 ORTHO05D001059 2.3e-13 79.3 54 70.4
Glyma.09G031000 Glycine max HOM05D001203 ORTHO05D001059 3.0e-13 79.0 64 62.5
Medtr2g032610 Medicago truncatula HOM05D001203 ORTHO05D001059 3.0e-13 79.0 52 69.2
vmacro07992 Vaccinium macrocarpon HOM05D001203 ORTHO05D001059 3.0e-13 79.0 51 70.6
VMungo0540G1387 Vigna mungo HOM05D001203 ORTHO05D001059 3.0e-13 79.0 58 63.8
CsaV3_3G015440 Cucumis sativus L. HOM05D001203 ORTHO05D001059 4.0e-13 78.6 54 68.5
RcHm_v2.0_Chr4g0426581 Rosa chinensis HOM05D001203 ORTHO05D001059 5.2e-13 78.2 54 68.5
Ca_00936_v3 Cicer arietinum L. HOM05D001203 ORTHO05D001059 6.8e-13 77.8 52 67.3
Gohir.D09G066600 Gossypium hirsutum HOM05D001203 ORTHO05D001059 6.8e-13 77.8 54 68.5
Gorai.006G081100 Gossypium raimondii HOM05D001203 ORTHO05D001059 6.8e-13 77.8 54 68.5
Thecc.04G309400 Theobroma cacao HOM05D001203 ORTHO05D001059 6.8e-13 77.8 54 68.5
Zm00001eb131100 Zea mays HOM05D001203 ORTHO05D001059 6.8e-13 77.8 54 66.7
FvH4_4g21050 Fragaria vesca HOM05D001203 ORTHO05D001059 8.8e-13 77.4 54 68.5
Lj6g0019071 Lotus japonicus HOM05D001203 ORTHO05D001059 8.8e-13 77.4 54 68.5
Peaxi162Scf00126g01228 Petunia axillaris HOM05D001203 ORTHO05D001059 8.8e-13 77.4 54 66.7
PGSC0003DMG400041751 Solanum tuberosum HOM05D001203 ORTHO05D001059 8.8e-13 77.4 86 46.5
FAN17G1976 Fragaria x ananassa HOM05D001203 ORTHO05D001059 1.2e-12 77.0 88 46.6
Psat1g163120 Pisum sativum HOM05D001203 ORTHO05D001059 1.2e-12 77.0 53 67.9
Sopen01g022810 Solanum pennellii HOM05D001203 ORTHO05D001059 1.2e-12 77.0 54 64.8
TPR.G35930 Trifolium pratense HOM05D001203 ORTHO05D001059 1.2e-12 77.0 54 66.7
CAN.G627.4 Capsicum annuum HOM05D001203 ORTHO05D001059 1.5e-12 76.6 54 64.8
CDE05G3147 Ceratophyllum demersum HOM05D001203 ORTHO05D001059 1.5e-12 76.6 52 67.3
FAN07G2453 Fragaria x ananassa HOM05D001203 ORTHO05D001059 1.5e-12 76.6 90 46.7
Gohir.A09G067000 Gossypium hirsutum HOM05D001203 ORTHO05D001059 1.5e-12 76.6 54 66.7
Aqoxy5G02739 Aquilegia oxysepala HOM05D001203 ORTHO05D001059 2.0e-12 76.3 56 62.5
COL.COLO4_34538 Corchorus olitorius HOM05D001203 ORTHO05D001059 2.0e-12 76.3 54 68.5
QL06p013675 Quercus lobata HOM05D001203 ORTHO05D001059 2.0e-12 76.3 54 64.8
HPP92_017024 Vanilla planifolia HOM05D001203 ORTHO05D001059 2.0e-12 76.3 54 64.8
Manes.15G003400 Manihot esculenta HOM05D001203 ORTHO05D001059 2.6e-12 75.9 50 70.0
PGR031G3246 Punica granatum HOM05D001203 ORTHO05D001059 2.6e-12 75.9 54 68.5
Lalb_Chr18g0058391 Lupinus albus HOM05D001203 ORTHO05D001059 4.4e-12 75.1 54 66.7
PSO729G0251 Papaver somniferum HOM05D001203 ORTHO05D001059 5.7e-12 74.7 54 66.7
DCAR_023381 Daucus carota HOM05D001203 ORTHO05D001059 9.8e-12 73.9 53 66.0
Duzib212G0570 Durio zibethinus HOM05D001203 ORTHO05D001059 9.8e-12 73.9 54 66.7
SEGI_34085 Sequoiadendron giganteum HOM05D001203 ORTHO05D001059 1.3e-11 73.6 54 64.8
ATR0693G187 Amborella trichopoda HOM05D001203 ORTHO05D001059 2.2e-11 72.8 52 61.5
EL10Ac3g06281 Beta vulgaris HOM05D001203 ORTHO05D001059 6.3e-11 71.2 62 61.3
CiPaw.01G131900 Carya illinoinensis HOM05D001203 ORTHO05D001059 6.3e-11 71.2 54 63.0
CDE11G1222 Ceratophyllum demersum HOM05D001203 ORTHO05D001059 6.3e-11 71.2 57 61.4
Eucgr.B02210 Eucalyptus grandis HOM05D001203 ORTHO05D001059 2.4e-10 69.3 54 61.1
SHI00064 Sapria himalayana HOM05D001203 ORTHO05D001059 3.1e-10 68.9 53 60.4
A03p07270 Brassica napus HOM05D001203 ORTHO05D001059 1.2e-06 57.0 63 46.0
Nitab4.5_0005120g0050 Nicotiana tabacum HOM05D001203 ORTHO05D001059 2.1e-06 56.2 54 42.6
C03p08340 Brassica napus HOM05D000600 ORTHO05D001059 2.7e-06 55.8 56 48.2
A02p03140 Brassica napus HOM05D001203 ORTHO05D001059 4.7e-06 55.1 46 47.8
HanXRQChr09g0264911 Helianthus annuus HOM05D001203 ORTHO05D001059 4.7e-06 55.1 46 47.8
Aa31LG11G13950 Aethionema arabicum HOM05D001203 ORTHO05D001059 6.1e-06 54.7 48 47.9
BcaB01g05035 Brassica carinata HOM05D001203 ORTHO05D001059 6.1e-06 54.7 48 47.9
BolC3t13341H Brassica oleracea HOM05D001203 ORTHO05D001059 6.1e-06 54.7 48 47.9
BraA03t10049Z Brassica rapa HOM05D001203 ORTHO05D001059 6.1e-06 54.7 48 47.9
COL.COLO4_03893 Corchorus olitorius HOM05D001203 ORTHO05D001059 6.1e-06 54.7 48 43.8
PGR042G3873 Punica granatum HOM05D001203 ORTHO05D001059 6.1e-06 54.7 49 46.9
Sc11g0008730 Simmondsia chinensis HOM05D001203 ORTHO05D001059 6.1e-06 54.7 59 40.7
Carub.0006s1379 Capsella rubella HOM05D001203 ORTHO05D001059 8.0e-06 54.3 48 47.9
CARHR197680 Cardamine hirsuta HOM05D001203 ORTHO05D001059 8.0e-06 54.3 48 47.9


User provided reference genes

Program Settings