Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 5.1e-131 471.1 238 100.0
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 2.2e-73 279.6 202 72.3
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 1.6e-71 273.5 232 64.7
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 1.1e-69 267.3 192 71.4
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 2.5e-69 266.2 223 64.6
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 1.2e-68 263.8 194 71.1
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 3.6e-68 262.3 223 65.0
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 8.0e-68 261.2 239 61.5
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 1.0e-67 260.8 196 70.4
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 4.0e-67 258.8 226 64.6
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 4.0e-67 258.8 220 61.8
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 5.2e-67 258.5 199 67.8
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 8.9e-67 257.7 232 61.6
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 8.9e-67 257.7 188 69.7
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 8.9e-67 257.7 242 58.3
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 8.9e-67 257.7 191 69.1
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 2.0e-66 256.5 214 64.0
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 2.6e-66 256.1 197 68.5
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 5.7e-66 255.0 193 67.9
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 2.2e-65 253.1 223 63.2
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 2.8e-65 252.7 192 66.7
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 3.7e-65 252.3 206 63.6
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 3.7e-65 252.3 243 58.4
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 4.9e-65 251.9 231 58.4
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 4.9e-65 251.9 208 61.1
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 6.3e-65 251.5 196 67.3
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 8.3e-65 251.1 231 57.1
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 8.3e-65 251.1 194 67.0
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 1.1e-64 250.8 207 63.3
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 1.1e-64 250.8 180 70.0
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 1.1e-64 250.8 161 78.3
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 1.4e-64 250.4 217 62.2
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 1.8e-64 250.0 275 52.4
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 3.1e-64 249.2 225 58.7
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 4.1e-64 248.8 216 60.2
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 7.0e-64 248.1 236 58.5
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 9.2e-64 247.7 216 59.7
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 2.0e-63 246.5 233 58.8
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 2.0e-63 246.5 214 61.2
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 2.7e-63 246.1 166 74.7
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 2.7e-63 246.1 200 62.5
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 3.5e-63 245.7 211 59.7
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 4.5e-63 245.4 228 58.3
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 7.8e-63 244.6 230 59.1
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 7.8e-63 244.6 187 64.7
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.0e-62 244.2 211 64.5
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 1.3e-62 243.8 232 58.6
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 1.3e-62 243.8 263 53.6
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 1.3e-62 243.8 221 60.2
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 1.3e-62 243.8 215 58.6
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 1.7e-62 243.4 163 76.1
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 2.3e-62 243.0 191 64.9
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 2.3e-62 243.0 230 57.8
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 5.0e-62 241.9 200 62.0
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.0e-62 241.9 233 57.9
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 5.0e-62 241.9 228 57.0
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 6.6e-62 241.5 195 62.6
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 1.1e-61 240.7 160 74.4
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 1.5e-61 240.4 239 55.2
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 1.9e-61 240.0 220 57.3
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 2.5e-61 239.6 229 58.5
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 2.5e-61 239.6 191 64.4
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 7.3e-61 238.0 193 63.2
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 7.3e-61 238.0 193 63.2
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 7.3e-61 238.0 250 55.2
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 7.3e-61 238.0 236 53.8
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 7.3e-61 238.0 214 58.4
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 9.5e-61 237.7 193 62.7
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 9.5e-61 237.7 228 56.6
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 2.1e-60 236.5 193 62.2
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 2.8e-60 236.1 228 55.7
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 3.6e-60 235.7 207 60.4
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 1.0e-59 234.2 191 62.8
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.4e-59 233.8 203 57.6
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 1.4e-59 233.8 191 62.8
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 1.4e-59 233.8 235 56.2
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 1.8e-59 233.4 261 51.7
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 3.1e-59 232.6 203 57.1
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 4.0e-59 232.3 190 62.6
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 6.8e-59 231.5 162 70.4
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 8.9e-59 231.1 192 59.9
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 8.9e-59 231.1 191 62.3
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.2e-58 230.7 254 53.9
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 1.2e-58 230.7 254 54.3
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 2.0e-58 229.9 194 64.9
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 2.6e-58 229.6 191 60.7
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 1.3e-57 227.3 189 62.4
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 2.9e-57 226.1 240 56.2
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 4.9e-57 225.3 195 57.9
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 8.3e-57 224.6 209 61.2
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 2.4e-56 223.0 164 67.1
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 7.0e-56 221.5 214 53.7
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 1.2e-55 220.7 193 59.1
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 1.3e-54 217.2 185 60.5
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 5.0e-54 215.3 182 61.0
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 2.5e-53 213.0 227 52.9
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 5.6e-53 211.8 192 60.9
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 9.8e-50 201.1 140 69.3
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.9e-48 196.8 157 63.1
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.2e-47 194.1 155 62.6
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 3.9e-46 189.1 243 46.5
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 2.1e-44 183.3 183 54.1
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 2.8e-44 183.0 157 58.0
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 4.7e-44 182.2 249 47.0
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 1.7e-41 173.7 156 59.6
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 4.1e-40 169.1 193 46.6
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 1.6e-39 167.2 189 48.1
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 5.4e-32 142.1 166 48.8
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 2.7e-31 139.8 168 44.6
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 6.0e-31 138.7 157 46.5
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 1.3e-30 137.5 92 71.7
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 3.0e-30 136.3 166 47.0
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 1.9e-29 133.7 156 44.2
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.6e-28 130.6 84 73.8
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 1.5e-26 124.0 81 72.8
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 1.3e-25 120.9 111 62.2
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 5.4e-24 115.5 89 69.7
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 1.2e-23 114.4 157 41.4
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 8.7e-22 108.2 106 54.7
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 1.9e-21 107.1 119 47.9
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 3.3e-21 106.3 119 47.1
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 9.6e-21 104.8 133 48.9
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 1.6e-20 104.0 152 41.4
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 5.3e-19 99.0 69 68.1
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 5.4e-16 89.0 99 46.5
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 4.3e-13 79.3 204 29.4
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 1.6e-12 77.4 118 41.5
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 4.0e-11 72.8 91 47.3
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 4.5e-10 69.3 118 37.3
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 2.7e-07 60.1 223 23.8
Lj1g0025916 Lotus japonicus HOM05D002933 ORTHO05D007742 1.3e-06 57.8 159 26.4
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.3e-06 57.8 120 37.5
Atru.chr12.543 Acer truncatum HOM05D002933 ORTHO05D007742 2.3e-06 57.0 178 24.2
Aa31LG10G10340 Aethionema arabicum HOM05D002933 ORTHO05D007742 3.0e-06 56.6 160 25.6
CsaV3_5G026220 Cucumis sativus L. HOM05D002933 ORTHO05D007742 3.0e-06 56.6 170 24.1
Sed0016692 Sechium edule HOM05D002933 ORTHO05D007742 3.0e-06 56.6 173 23.7
COL.COLO4_14919 Corchorus olitorius HOM05D002933 ORTHO05D007742 5.1e-06 55.8 156 26.3
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 5.1e-06 55.8 176 26.1
Peaxi162Scf01223g00010 Petunia axillaris HOM05D002933 ORTHO05D007742 5.1e-06 55.8 166 22.9
Phvul.008G015100 Phaseolus vulgaris HOM05D002933 ORTHO05D007742 5.1e-06 55.8 223 22.4
THA.LOC104824268 Tarenaya hassleriana HOM05D002933 ORTHO05D007742 6.7e-06 55.5 142 28.9
ECA246G3602 Erigeron canadensis HOM05D002933 ORTHO05D007742 8.7e-06 55.1 173 23.7
Glyma.18G286500 Glycine max HOM05D002933 ORTHO05D007742 8.7e-06 55.1 161 25.5


User provided reference genes

Program Settings