Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0003510 Simmondsia chinensis HOM05D009348 ORTHO05D010856 0.0e+00 1148.7 571 100.0
Sc13g0007440 Simmondsia chinensis HOM05D009348 ORTHO05D010856 4.7e-58 229.9 336 40.5
Sc21g0001740 Simmondsia chinensis HOM05D011136 ORTHO05D010856 2.4e-57 227.6 457 34.4
Sc16g0001350 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.1e-46 192.2 347 34.3
Sc06g0001740 Simmondsia chinensis HOM05D009348 ORTHO05D010856 4.6e-37 160.2 207 38.6
Sc04g0005250 Simmondsia chinensis HOM05D009348 ORTHO05D010856 7.1e-30 136.3 119 53.8
Sc10g0009390 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.5e-27 128.6 174 36.2
Sc18g0000360 Simmondsia chinensis HOM05D009348 ORTHO05D030613 1.6e-26 125.2 117 59.0
Sc09g0002060 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.6e-24 117.9 329 28.3
Sc07g0002530 Simmondsia chinensis HOM05D011136 ORTHO05D010856 6.5e-23 113.2 231 29.9
Sc04g0005170 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.1e-22 112.5 101 51.5
Sc22g0001820 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.5e-22 111.3 260 28.8
Sc08g0006400 Simmondsia chinensis HOM05D011136 ORTHO05D010856 5.5e-22 110.2 208 35.1
Sc08g0006410 Simmondsia chinensis HOM05D011136 ORTHO05D010856 2.7e-21 107.8 235 28.9
Sc11g0007570 Simmondsia chinensis HOM05D000027 ORTHO05D000500 2.7e-21 107.8 135 36.3
Sc02g0007350 Simmondsia chinensis HOM05D011136 ORTHO05D010856 2.3e-20 104.8 196 32.7
Sc22g0003060 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.3e-20 104.8 178 38.8
Sc04g0004290 Simmondsia chinensis HOM05D009348 ORTHO05D010856 5.1e-20 103.6 164 35.4
vmacro21908 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 8.7e-20 102.8 276 30.1
Sc01g0000330 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.1e-19 102.4 104 52.9
Sc25g0000230 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.9e-19 101.7 188 30.3
Sc06g0006060 Simmondsia chinensis HOM05D011136 ORTHO05D010856 2.5e-19 101.3 131 37.4
Sc14g0002620 Simmondsia chinensis HOM05D009209 ORTHO05D011705 9.7e-19 99.4 237 29.5
Sc03g0004340 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.8e-18 97.8 239 28.5
Sc22g0002690 Simmondsia chinensis HOM05D000043 ORTHO05D030613 6.3e-18 96.7 183 37.2
Sc01g0002340 Simmondsia chinensis HOM05D011136 ORTHO05D010856 2.4e-17 94.7 122 37.7
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 5.3e-17 93.6 311 25.4
Gohir.A10G205900 Gossypium hirsutum HOM05D000003 ORTHO05D000006 2.0e-16 91.7 309 22.7
Sc02g0007120 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.0e-15 89.4 108 35.2
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.7e-15 88.6 372 24.5
Sc08g0006340 Simmondsia chinensis HOM05D027330 ORTHO05D010856 1.7e-15 88.6 104 37.5
Sc12g0005710 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.7e-15 88.6 304 27.3
Ah.02g118210 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.2e-15 88.2 347 25.4
Sc07g0000050 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.2e-15 88.2 163 30.7
Rhsim05G0075400 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.8e-15 87.4 368 23.4
Sc08g0006360 Simmondsia chinensis HOM05D027330 ORTHO05D010856 8.5e-15 86.3 104 36.5
arahy.Tifrunner.gnm1.ann1.2029P5 Arachis hypogaea HOM05D012808 ORTHO05D011705 1.1e-14 85.9 156 27.6
Sc10g0010640 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.4e-14 85.5 245 28.6
Sc16g0001340 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.4e-14 85.5 149 31.5
Sc03g0004450 Simmondsia chinensis HOM05D009209 ORTHO05D011705 5.5e-14 83.6 297 23.2
Sc06g0002140 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.1e-13 81.6 196 29.1
Sc21g0004040 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.1e-13 81.6 152 29.6
Sc15g0001330 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.6e-13 80.9 149 30.9
Sc06g0004220 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.4e-12 79.0 298 24.2
Sc14g0007840 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.8e-12 78.6 259 28.2
Ah.08g219520 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.0e-12 77.8 372 21.5
Ah.03g145270 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.1e-12 77.0 359 20.1
Sc04g0010510 Simmondsia chinensis HOM05D009348 ORTHO05D010856 5.1e-12 77.0 153 39.9
Sc26g0001380 Simmondsia chinensis HOM05D006933 ORTHO05D009629 8.8e-12 76.3 251 27.5
Thecc.09G068100 Theobroma cacao HOM05D012808 ORTHO05D011121 8.8e-12 76.3 170 24.7
Phvul.009G011500 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.1e-11 75.9 348 24.1
Ah.01g013230 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.3e-11 74.3 428 23.6
Sc16g0003440 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.4e-11 73.9 266 23.7
MBI17_g39004_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 7.4e-11 73.2 291 24.7
Sc12g0005620 Simmondsia chinensis HOM05D009348 ORTHO05D010856 7.4e-11 73.2 191 25.7
Sc18g0002450 Simmondsia chinensis HOM05D006933 ORTHO05D009629 7.4e-11 73.2 299 23.4
EL10Ac7g17245 Beta vulgaris HOM05D008976 ORTHO05D011121 1.7e-10 72.0 461 20.4
Sc17g0002350 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.7e-10 72.0 204 25.0
MBI12_g15041_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 2.2e-10 71.6 264 22.0
Lj3g0023441 Lotus japonicus HOM05D008220 ORTHO05D010358 2.8e-10 71.2 290 22.1
RhsimUnG0200600 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.8e-10 71.2 127 28.3
Sc17g0002300 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.8e-10 71.2 248 23.8
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 3.7e-10 70.9 111 41.4
vmacro22723 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 6.3e-10 70.1 267 21.7
Ah.06g186480 Amaranthus hybridus HOM05D008762 ORTHO05D011252 8.2e-10 69.7 425 24.2
CSS0012554 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 8.2e-10 69.7 266 24.1
Sc13g0006580 Simmondsia chinensis HOM05D009348 ORTHO05D010856 8.2e-10 69.7 126 29.4
Ah.13g066110 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.4e-09 68.2 355 20.8
EL10Ac5g12917 Beta vulgaris HOM05D008976 ORTHO05D011121 4.1e-09 67.4 471 20.6
EL10Ac6g13580 Beta vulgaris HOM05D008976 ORTHO05D011121 4.1e-09 67.4 471 20.6
HanXRQChr13g0401811 Helianthus annuus HOM05D000003 ORTHO05D000004 4.1e-09 67.4 340 23.8
CSS0024781 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 6.9e-09 66.6 246 23.6
Phvul.009G005600 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 6.9e-09 66.6 269 21.2
Thecc.05G279300 Theobroma cacao HOM05D012808 ORTHO05D000006 6.9e-09 66.6 93 30.1
DCAR_027640 Daucus carota HOM05D004122 ORTHO05D004468 9.1e-09 66.2 326 23.0
DCAR_027728 Daucus carota HOM05D004122 ORTHO05D004468 9.1e-09 66.2 326 23.0
Lalb_Chr23g0273581 Lupinus albus HOM05D002777 ORTHO05D001516 9.1e-09 66.2 146 26.7
Phvul.010G071200 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 9.1e-09 66.2 284 21.8
Rhsim05G0024200 Rhododendron simsii HOM05D008219 ORTHO05D009356 9.1e-09 66.2 154 26.0
DCAR_004018 Daucus carota HOM05D004122 ORTHO05D004468 1.2e-08 65.9 279 22.9
Sc03g0004550 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.2e-08 65.9 156 26.3
MBI04_g05748_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 1.5e-08 65.5 270 23.3
Sc22g0003950 Simmondsia chinensis HOM05D008762 ORTHO05D011252 1.5e-08 65.5 85 36.5
Ah.02g117550 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.6e-08 64.7 314 24.5
LjContig00357g0008125 Lotus japonicus HOM05D008220 ORTHO05D010358 2.6e-08 64.7 287 22.3
vmacro00634 Vaccinium macrocarpon HOM05D000516 ORTHO05D000409 2.6e-08 64.7 230 24.8
Lj1g0024049 Lotus japonicus HOM05D008220 ORTHO05D010358 3.4e-08 64.3 292 23.6
MBI17_g22832_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 3.4e-08 64.3 262 24.0
Ah.12g063050 Amaranthus hybridus HOM05D000030 ORTHO05D000009 4.5e-08 63.9 78 41.0
EL10Ac5g10790 Beta vulgaris HOM05D008976 ORTHO05D011121 4.5e-08 63.9 387 19.6
MBI18_g45747_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 4.5e-08 63.9 296 21.3
vmacro09750 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 4.5e-08 63.9 311 22.8
Sc01g0005690 Simmondsia chinensis HOM05D006933 ORTHO05D009629 5.9e-08 63.5 238 25.6
Actinidia34556 Actinidia chinensis HOM05D008219 ORTHO05D009356 7.7e-08 63.2 295 23.7
EL10Ac3g05379 Beta vulgaris HOM05D008976 ORTHO05D011121 7.7e-08 63.2 200 22.5
EL10Ac6g14951 Beta vulgaris HOM05D008976 ORTHO05D011121 7.7e-08 63.2 177 23.7
DCAR_017339 Daucus carota HOM05D004122 ORTHO05D004468 7.7e-08 63.2 459 23.5
MBI12_g43633_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 7.7e-08 63.2 267 22.8
Sc20g0004530 Simmondsia chinensis HOM05D009348 ORTHO05D010856 7.7e-08 63.2 54 55.6
EL10Ac4g10257 Beta vulgaris HOM05D008976 ORTHO05D011121 1.0e-07 62.8 177 24.3
Gohir.A01G136601 Gossypium hirsutum HOM05D000003 ORTHO05D015081 1.0e-07 62.8 286 21.3
Lj3g0019996 Lotus japonicus HOM05D008220 ORTHO05D010358 1.0e-07 62.8 309 21.0
Lj6g0019563 Lotus japonicus HOM05D008220 ORTHO05D010358 1.0e-07 62.8 248 23.8
EL10Ac4g09831 Beta vulgaris HOM05D008976 ORTHO05D011121 1.3e-07 62.4 218 22.5
Lj5g0003699 Lotus japonicus HOM05D008220 ORTHO05D010358 1.3e-07 62.4 269 21.2
Phvul.006G002800 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.3e-07 62.4 285 23.9
Lj6g0014297 Lotus japonicus HOM05D008220 ORTHO05D010358 1.7e-07 62.0 263 22.4
Phvul.004G009401 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.7e-07 62.0 311 22.5
EL10Ac1g00331 Beta vulgaris HOM05D008976 ORTHO05D011121 2.2e-07 61.6 195 21.5
Phvul.L005801 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.2e-07 61.6 403 19.9
Ah.07g201540 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.9e-07 61.2 99 34.3
EL10Ac4g09899 Beta vulgaris HOM05D008976 ORTHO05D011121 2.9e-07 61.2 199 23.6
Sc07g0003070 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.9e-07 61.2 65 44.6
Sc14g0002520 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.9e-07 61.2 101 27.7
EL10Ac6g15678 Beta vulgaris HOM05D008976 ORTHO05D011121 3.8e-07 60.8 179 25.7
MBI01_g02272_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 3.8e-07 60.8 247 21.5
Phvul.008G120900 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.8e-07 60.8 373 23.1
Sc01g0007310 Simmondsia chinensis HOM05D011136 ORTHO05D010856 3.8e-07 60.8 174 31.6
Sc01g0007590 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.8e-07 60.8 76 31.6
Sc03g0005750 Simmondsia chinensis HOM05D009348 ORTHO05D011705 3.8e-07 60.8 215 30.7
TPR.G18402 Trifolium pratense HOM05D002777 ORTHO05D001516 3.8e-07 60.8 340 19.4
EL10Ac1g01108 Beta vulgaris HOM05D008976 ORTHO05D011121 5.0e-07 60.5 366 19.4
EL10Ac4g08137 Beta vulgaris HOM05D008976 ORTHO05D011121 5.0e-07 60.5 168 22.0
Lj4g0027037 Lotus japonicus HOM05D002777 ORTHO05D001516 5.0e-07 60.5 312 22.1
MBI02_g27120_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 5.0e-07 60.5 256 21.9
MBI18_g31932_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 5.0e-07 60.5 281 24.2
Sc24g0000790 Simmondsia chinensis HOM05D006933 ORTHO05D009629 5.0e-07 60.5 247 21.9
Thecc.07G067600 Theobroma cacao HOM05D023671 ORTHO05D001516 5.0e-07 60.5 122 25.4
Sc23g0004170 Simmondsia chinensis HOM05D006933 ORTHO05D009629 6.5e-07 60.1 261 26.4
Ah.15g100500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 8.5e-07 59.7 106 36.8
Lj4g0007213 Lotus japonicus HOM05D002777 ORTHO05D001516 8.5e-07 59.7 363 22.0
Lj4g0013144 Lotus japonicus HOM05D008220 ORTHO05D010358 8.5e-07 59.7 291 19.2
Lj1g0014390 Lotus japonicus HOM05D002777 ORTHO05D001516 1.1e-06 59.3 308 21.1
Lj1g0010280 Lotus japonicus HOM05D008220 ORTHO05D010358 1.4e-06 58.9 308 22.1
MBI01_g01363_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 1.4e-06 58.9 274 21.5
Ah.16g108500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.9e-06 58.5 80 38.8
COL.COLO4_00259 Corchorus olitorius HOM05D008263 ORTHO05D009583 1.9e-06 58.5 318 19.8
MBI10_g11071_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 1.9e-06 58.5 358 21.2
MBI18_g33404_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 1.9e-06 58.5 306 21.9
Sc19g0004790 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.9e-06 58.5 109 37.6
MBI11_g34175_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 2.5e-06 58.2 277 22.7
Phvul.006G023800 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.5e-06 58.2 290 20.7
Ah.05g173090 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.2e-06 57.8 82 36.6
Lj3g0021288 Lotus japonicus HOM05D002777 ORTHO05D001516 3.2e-06 57.8 286 23.4
Lj5g0002610 Lotus japonicus HOM05D008220 ORTHO05D010358 3.2e-06 57.8 277 22.7
MBI01_g29257_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 3.2e-06 57.8 284 21.1
EL10Ac7g17991 Beta vulgaris HOM05D008976 ORTHO05D011121 4.2e-06 57.4 159 22.0
DCAR_005094 Daucus carota HOM05D012331 ORTHO05D004468 4.2e-06 57.4 422 22.5
vmacro11531 Vaccinium macrocarpon HOM05D010265 ORTHO05D009356 4.2e-06 57.4 84 35.7
EL10Ac8g19650 Beta vulgaris HOM05D000992 ORTHO05D006704 5.5e-06 57.0 147 25.2
DCAR_027726 Daucus carota HOM05D004122 ORTHO05D004468 5.5e-06 57.0 102 27.5
Gohir.A06G194460 Gossypium hirsutum HOM05D000003 ORTHO05D015081 5.5e-06 57.0 82 28.0
Sc10g0002300 Simmondsia chinensis HOM05D009348 ORTHO05D010856 5.5e-06 57.0 115 35.7
Sc21g0002000 Simmondsia chinensis HOM05D011136 ORTHO05D010856 5.5e-06 57.0 145 29.0
DCAR_011921 Daucus carota HOM05D004122 ORTHO05D004468 7.2e-06 56.6 301 20.6
HanXRQChr05g0132981 Helianthus annuus HOM05D003915 ORTHO05D005386 9.4e-06 56.2 330 20.6
MBI11_g19497_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 9.4e-06 56.2 269 22.7
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 9.4e-06 56.2 203 30.5
Sc14g0003540 Simmondsia chinensis HOM05D009209 ORTHO05D011057 9.4e-06 56.2 108 30.6


User provided reference genes

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