Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0003320 Simmondsia chinensis HOM05D007737 ORTHO05D009754 1.9e-107 392.5 201 100.0
QL04p025132 Quercus lobata HOM05D007737 ORTHO05D009754 9.2e-41 171.0 137 67.9
CSS0024286 Camellia sinensis var. sinensis HOM05D007737 ORTHO05D009754 6.0e-40 168.3 135 68.1
Dinv43570 Davidia involucrata HOM05D007737 ORTHO05D009754 7.3e-38 161.4 138 59.4
RcHm_v2.0_Chr0c20g0500251 Rosa chinensis HOM05D007737 ORTHO05D009754 8.1e-37 157.9 133 55.6
AUR62023349 Chenopodium quinoa HOM05D007737 ORTHO05D009754 1.1e-36 157.5 148 61.5
Thecc.10G000900 Theobroma cacao HOM05D007737 ORTHO05D009754 1.5e-35 153.7 135 63.0
Manes.12G126400 Manihot esculenta HOM05D007737 ORTHO05D009754 3.4e-35 152.5 179 45.8
Psat0s2829g0120 Pisum sativum HOM05D007737 ORTHO05D009754 3.4e-35 152.5 110 67.3
FvH4_7g08430 Fragaria vesca HOM05D007737 ORTHO05D009754 9.9e-35 151.0 138 62.3
LjContig00564g0006359 Lotus japonicus HOM05D007737 ORTHO05D009754 1.7e-34 150.2 117 66.7
Psat0s4349g0040 Pisum sativum HOM05D007737 ORTHO05D009754 2.2e-34 149.8 110 68.2
Sed0019089 Sechium edule HOM05D007737 ORTHO05D009754 2.9e-34 149.4 140 62.9
CiPaw.13G019700 Carya illinoinensis HOM05D007737 ORTHO05D009754 3.7e-34 149.1 129 63.6
Duzib128G0131 Durio zibethinus HOM05D007737 ORTHO05D009754 6.4e-34 148.3 123 63.4
Solyc06g051160.4 Solanum lycopersicum HOM05D007737 ORTHO05D009754 6.4e-34 148.3 111 60.4
AUR62013808 Chenopodium quinoa HOM05D007737 ORTHO05D009754 8.3e-34 147.9 146 61.0
CsaV3_6G006540 Cucumis sativus L. HOM05D007737 ORTHO05D009754 8.3e-34 147.9 108 72.2
Eucgr.D01138 Eucalyptus grandis HOM05D007737 ORTHO05D009754 1.9e-33 146.7 135 60.7
Glyma.02G276300 Glycine max HOM05D007737 ORTHO05D009754 1.9e-33 146.7 117 67.5
Hma1.2p1_0601F.1_g187210 Hydrangea macrophylla HOM05D007737 ORTHO05D009754 3.2e-33 146.0 144 49.3
FAN03G2224 Fragaria x ananassa HOM05D007737 ORTHO05D009754 7.1e-33 144.8 121 66.1
Gohir.D04G072800 Gossypium hirsutum HOM05D007737 ORTHO05D009754 1.2e-32 144.1 139 49.6
Gorai.012G081800 Gossypium raimondii HOM05D007737 ORTHO05D009754 1.2e-32 144.1 139 49.6
Lalb_Chr17g0347681 Lupinus albus HOM05D007737 ORTHO05D009754 2.1e-32 143.3 112 68.8
GSVIVG01018401001 Vitis vinifera HOM05D007737 ORTHO05D009754 2.1e-32 143.3 138 58.0
Psat0s4932g0040 Pisum sativum HOM05D007737 ORTHO05D009754 3.5e-32 142.5 110 68.2
PGSC0003DMG400015652 Solanum tuberosum HOM05D007737 ORTHO05D009754 3.5e-32 142.5 97 61.9
Gohir.A05G333700 Gossypium hirsutum HOM05D007737 ORTHO05D009754 6.0e-32 141.7 139 48.9
Oeu029042.1 Olea europaea HOM05D007737 ORTHO05D009754 6.0e-32 141.7 133 48.1
arahy.Tifrunner.gnm1.ann1.HH45UC Arachis hypogaea HOM05D007737 ORTHO05D009754 7.8e-32 141.4 105 71.4
MD02G1228500 Malus domestica HOM05D007737 ORTHO05D009754 1.0e-31 141.0 131 63.4
Cc02_g25850 Coffea canephora HOM05D007737 ORTHO05D009754 2.3e-31 139.8 107 61.7
PGR119G2515 Punica granatum HOM05D007737 ORTHO05D009754 3.0e-31 139.4 125 59.2
arahy.Tifrunner.gnm1.ann1.BW18VB Arachis hypogaea HOM05D007737 ORTHO05D009754 5.1e-31 138.7 116 63.8
Ciclev10022762m.g Citrus clementina HOM05D007737 ORTHO05D009754 5.1e-31 138.7 95 74.7
MSTRG.4970 Avicennia marina HOM05D007737 ORTHO05D009754 6.6e-31 138.3 110 54.5
CAN.G1183.16 Capsicum annuum HOM05D007737 ORTHO05D009754 6.6e-31 138.3 95 76.8
ECA236G0282 Erigeron canadensis HOM05D007737 ORTHO05D009754 6.6e-31 138.3 163 55.2
TAR375G1083 Trochodendron aralioides HOM05D007737 ORTHO05D009754 1.5e-30 137.1 124 51.6
HanXRQChr06g0168511 Helianthus annuus HOM05D007737 ORTHO05D009754 1.9e-30 136.7 108 58.3
COL.COLO4_19346 Corchorus olitorius HOM05D007737 ORTHO05D009754 3.3e-30 136.0 127 48.0
Sabra14G0139900 Salix brachista HOM05D007737 ORTHO05D009754 3.3e-30 136.0 127 50.4
Lsat_1_v5_gn_7_11721 Lactuca sativa HOM05D007737 ORTHO05D009754 1.2e-29 134.0 134 52.2
Actinidia30967 Actinidia chinensis HOM05D007737 ORTHO05D009754 1.1e-28 131.0 135 47.4
Phvul.008G205200 Phaseolus vulgaris HOM05D007737 ORTHO05D009754 1.1e-28 131.0 117 61.5
Migut.N01704 Erythranthe guttata HOM05D007737 ORTHO05D009754 1.8e-28 130.2 95 58.9
arahy.Tifrunner.gnm1.ann1.J0MG2W Arachis hypogaea HOM05D007737 ORTHO05D009754 1.2e-27 127.5 136 46.3
FAN10G0020 Fragaria x ananassa HOM05D007737 ORTHO05D009754 3.4e-27 125.9 113 64.6
Atru.chr5.19 Acer truncatum HOM05D007737 ORTHO05D009754 4.4e-27 125.6 94 72.3
Os04g0589200 Oryza sativa ssp. japonica HOM05D007737 ORTHO05D009754 7.6e-27 124.8 99 64.6
Potri.014G179800 Populus trichocarpa HOM05D007737 ORTHO05D009754 9.9e-27 124.4 114 61.4
PSO210G3425 Papaver somniferum HOM05D007737 ORTHO05D009754 1.3e-26 124.0 126 59.5
Nitab4.5_0011440g0030 Nicotiana tabacum HOM05D007737 ORTHO05D009754 3.8e-26 122.5 97 56.7
SalBow4G2387 Salvia bowleyana HOM05D007737 ORTHO05D009754 8.4e-26 121.3 177 40.1
PSO210G3843 Papaver somniferum HOM05D007737 ORTHO05D009754 1.4e-25 120.6 136 53.7
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 2.4e-25 119.8 78 62.8
SGA_v2.0_scaffold77G25232 Striga asiatica HOM05D007737 ORTHO05D009754 2.4e-25 119.8 113 47.8
TWI14G0846 Tripterygium wilfordii HOM05D007737 ORTHO05D009754 4.2e-25 119.0 153 44.4
CANSAT35G0994 Cannabis sativa HOM05D007737 ORTHO05D009754 5.4e-25 118.6 117 46.2
Sopen06g017020 Solanum pennellii HOM05D007737 ORTHO05D009754 2.1e-24 116.7 80 66.2
Actinidia05801 Actinidia chinensis HOM05D007737 ORTHO05D009754 4.6e-24 115.5 103 49.5
DCAR_029388 Daucus carota HOM05D007737 ORTHO05D009754 7.8e-24 114.8 129 44.2
TWI23G0770 Tripterygium wilfordii HOM05D007737 ORTHO05D009754 1.0e-23 114.4 128 49.2
Mapoly0099s0043 Marchantia polymorpha HOM05D007737 ORTHO05D009754 3.0e-23 112.8 86 69.8
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 3.3e-22 109.4 70 64.3
Sp3g15800 Schrenkiella parvula HOM05D007737 ORTHO05D009754 2.8e-21 106.3 106 56.6
HPP92_007265 Vanilla planifolia HOM05D007737 ORTHO05D009754 2.8e-21 106.3 98 62.2
Carub.0003s1738 Capsella rubella HOM05D007737 ORTHO05D009754 1.4e-20 104.0 110 51.8
AL3G30770 Arabidopsis lyrata HOM05D007737 ORTHO05D009754 1.5e-19 100.5 109 53.2
BraA01t03730Z Brassica rapa HOM05D007737 ORTHO05D009754 1.5e-19 100.5 105 52.4
Thhalv10021734m.g Eutrema salsugineum HOM05D007737 ORTHO05D009754 3.4e-19 99.4 106 54.7
Nitab4.5_0000507g0110 Nicotiana tabacum HOM05D007737 ORTHO05D009754 5.8e-19 98.6 75 60.0
CARHR093000 Cardamine hirsuta HOM05D007737 ORTHO05D009754 7.6e-19 98.2 106 57.5
Prupe.2G111200 Prunus persica HOM05D007737 ORTHO05D009754 1.7e-18 97.1 107 57.9
THA.LOC104806480 Tarenaya hassleriana HOM05D007737 ORTHO05D009754 2.9e-18 96.3 94 59.6
unitig_22.g5837 Utricularia gibba HOM05D007737 ORTHO05D009754 2.9e-18 96.3 85 68.2
Pp3c17_5190 Physcomitrium patens HOM05D007737 ORTHO05D009754 6.4e-18 95.1 84 65.5
AT3G17668 Arabidopsis thaliana HOM05D007737 ORTHO05D009754 8.4e-18 94.7 106 52.8
BcaB04g20827 Brassica carinata HOM05D001802 ORTHO05D001788 1.1e-17 94.4 109 51.4
C01p46550 Brassica napus HOM05D007737 ORTHO05D009754 1.4e-17 94.0 109 47.7
BcaC09g48726 Brassica carinata HOM05D001802 ORTHO05D001788 3.2e-17 92.8 105 49.5
ClCG06G000750 Citrullus lanatus HOM05D007737 ORTHO05D009754 7.1e-17 91.7 48 77.1
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 1.2e-16 90.9 98 42.9
FAN06G2876 Fragaria x ananassa HOM05D007737 ORTHO05D009754 4.6e-16 89.0 71 54.9
Pp3c8_23020 Physcomitrium patens HOM05D007737 ORTHO05D009754 1.3e-15 87.4 84 59.5
AagrBONN_evm.TU.Sc2ySwM_344.418 Anthoceros agrestis HOM05D007737 ORTHO05D009754 8.7e-15 84.7 102 39.2
HPP92_007269 Vanilla planifolia HOM05D007737 ORTHO05D009754 1.1e-09 67.8 42 64.3
Aqoxy3G02490 Aquilegia oxysepala HOM05D007737 ORTHO05D009754 6.0e-08 62.0 95 44.2
vmacro13551 Vaccinium macrocarpon HOM05D007737 ORTHO05D009754 7.9e-08 61.6 163 29.4
A01p36650 Brassica napus HOM05D007737 ORTHO05D009754 3.0e-07 59.7 48 47.9


User provided reference genes

Program Settings