Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0003210 Simmondsia chinensis HOM05D007841 ORTHO05D009919 1.3e-88 329.7 168 100.0
Hund17114 Selenicereus undatus HOM05D007841 ORTHO05D009919 3.4e-20 102.4 58 86.2
Gohir.D12G101400 Gossypium hirsutum HOM05D007841 ORTHO05D009919 6.3e-19 98.2 55 85.5
Gorai.008G110500 Gossypium raimondii HOM05D007841 ORTHO05D009919 6.3e-19 98.2 55 85.5
Manes.05G057100 Manihot esculenta HOM05D007841 ORTHO05D009919 1.4e-18 97.1 52 90.4
Duzib138G1421 Durio zibethinus HOM05D007841 ORTHO05D009919 1.8e-18 96.7 55 83.6
Atru.chr5.91 Acer truncatum HOM05D007841 ORTHO05D009919 3.1e-18 95.9 59 81.4
COL.COLO4_12370 Corchorus olitorius HOM05D007841 ORTHO05D009919 3.1e-18 95.9 55 83.6
ClCG05G003010 Citrullus lanatus HOM05D007841 ORTHO05D009919 4.1e-18 95.5 57 78.9
PGR004G1954 Punica granatum HOM05D007841 ORTHO05D009919 4.1e-18 95.5 57 80.7
Gohir.A12G098200 Gossypium hirsutum HOM05D007841 ORTHO05D009919 5.4e-18 95.1 55 81.8
EL10Ac1g00736 Beta vulgaris HOM05D007841 ORTHO05D009919 7.0e-18 94.7 55 83.6
Haze_02887 Corylus avellana HOM05D000061 ORTHO05D000915 9.2e-18 94.4 52 84.6
Oeu034848.1 Olea europaea HOM05D007841 ORTHO05D009919 9.2e-18 94.4 55 85.5
Thecc.01G400700 Theobroma cacao HOM05D007841 ORTHO05D009919 9.2e-18 94.4 57 84.2
CiPaw.14G018000 Carya illinoinensis HOM05D007841 ORTHO05D009919 1.2e-17 94.0 55 81.8
Ciclev10023064m.g Citrus clementina HOM05D007841 ORTHO05D009919 1.2e-17 94.0 58 79.3
Hma1.2p1_2138F.1_g314930 Hydrangea macrophylla HOM05D007841 ORTHO05D009919 2.0e-17 93.2 59 83.1
Potri.014G051850 Populus trichocarpa HOM05D007841 ORTHO05D009919 2.0e-17 93.2 52 84.6
CsaV3_3G010620 Cucumis sativus L. HOM05D007841 ORTHO05D009919 2.7e-17 92.8 57 78.9
Prupe.2G120100 Prunus persica HOM05D007841 ORTHO05D009919 2.7e-17 92.8 55 78.2
HanXRQChr01g0019691 Helianthus annuus HOM05D007841 ORTHO05D009919 3.5e-17 92.4 49 87.8
arahy.Tifrunner.gnm1.ann1.K94MSK Arachis hypogaea HOM05D007841 ORTHO05D009919 4.5e-17 92.0 57 77.2
arahy.Tifrunner.gnm1.ann1.X5EUJ4 Arachis hypogaea HOM05D007841 ORTHO05D009919 4.5e-17 92.0 57 77.2
SalBow4G0679 Salvia bowleyana HOM05D007841 ORTHO05D009919 4.5e-17 92.0 77 58.4
Eucgr.D01199 Eucalyptus grandis HOM05D007841 ORTHO05D009919 5.9e-17 91.7 55 81.8
MD02G1221100 Malus domestica HOM05D007841 ORTHO05D009919 5.9e-17 91.7 55 76.4
MD07G1096500 Malus domestica HOM05D007841 ORTHO05D009919 7.7e-17 91.3 55 78.2
CANSAT25G3347 Cannabis sativa HOM05D007841 ORTHO05D009919 1.3e-16 90.5 53 81.1
CANSAT25G3825 Cannabis sativa HOM05D007841 ORTHO05D009919 1.3e-16 90.5 53 81.1
Phvul.008G138900 Phaseolus vulgaris HOM05D007841 ORTHO05D009919 1.3e-16 90.5 55 78.2
Sed0011386 Sechium edule HOM05D007841 ORTHO05D009919 1.3e-16 90.5 57 75.4
THA.LOC104814059 Tarenaya hassleriana HOM05D007841 ORTHO05D009919 1.3e-16 90.5 47 89.4
Actinidia30942 Actinidia chinensis HOM05D007841 ORTHO05D009919 1.7e-16 90.1 49 85.7
Cc02_g25410 Coffea canephora HOM05D007841 ORTHO05D009919 1.7e-16 90.1 50 82.0
RcHm_v2.0_Chr1g0345181 Rosa chinensis HOM05D007841 ORTHO05D009919 1.7e-16 90.1 59 78.0
CSS0006405 Camellia sinensis var. sinensis HOM05D007841 ORTHO05D009919 2.9e-16 89.4 63 73.0
ECA248G0141 Erigeron canadensis HOM05D007841 ORTHO05D009919 2.9e-16 89.4 49 85.7
Lsat_1_v5_gn_1_83981 Lactuca sativa HOM05D007841 ORTHO05D009919 2.9e-16 89.4 49 85.7
Solyc01g088770.3 Solanum lycopersicum HOM05D007841 ORTHO05D009919 2.9e-16 89.4 50 84.0
Sopen01g035610 Solanum pennellii HOM05D007841 ORTHO05D009919 2.9e-16 89.4 50 84.0
PGSC0003DMG400001726 Solanum tuberosum HOM05D007841 ORTHO05D009919 2.9e-16 89.4 50 84.0
FAN01G1055 Fragaria x ananassa HOM05D007841 ORTHO05D009919 3.8e-16 89.0 62 71.0
FAN03G2201 Fragaria x ananassa HOM05D007841 ORTHO05D009919 3.8e-16 89.0 62 71.0
Medtr7g050540 Medicago truncatula HOM05D007841 ORTHO05D009919 3.8e-16 89.0 55 76.4
Psat3g152880 Pisum sativum HOM05D007841 ORTHO05D009919 3.8e-16 89.0 55 76.4
Nitab4.5_0004425g0050 Nicotiana tabacum HOM05D007841 ORTHO05D009919 5.0e-16 88.6 61 77.0
BraA10t42285Z Brassica rapa HOM05D007841 ORTHO05D009919 1.5e-15 87.0 64 70.3
Peaxi162Scf00793g00363 Petunia axillaris HOM05D007841 ORTHO05D009919 1.9e-15 86.7 55 76.4
Lj1g0014858 Lotus japonicus HOM05D007841 ORTHO05D009919 2.5e-15 86.3 55 78.2
Lalb_Chr03g0040951 Lupinus albus HOM05D007841 ORTHO05D009919 2.5e-15 86.3 55 74.5
Sp1g00090 Schrenkiella parvula HOM05D007841 ORTHO05D009919 2.5e-15 86.3 68 69.1
CAN.G756.38 Capsicum annuum HOM05D007841 ORTHO05D009919 3.3e-15 85.9 59 78.0
Glyma.08G340600 Glycine max HOM05D007841 ORTHO05D009919 4.3e-15 85.5 55 76.4
Aqoxy7G00835 Aquilegia oxysepala HOM05D007841 ORTHO05D009919 5.6e-15 85.1 49 81.6
PSO675G0834 Papaver somniferum HOM05D007841 ORTHO05D009919 9.5e-15 84.3 52 76.9
PSO732G0130 Papaver somniferum HOM05D007841 ORTHO05D009919 9.5e-15 84.3 54 74.1
AUR62023385 Chenopodium quinoa HOM05D007841 ORTHO05D009919 1.2e-14 84.0 55 74.5
BcaB03g13636 Brassica carinata HOM05D000300 ORTHO05D000383 1.6e-14 83.6 59 74.6
AUR62013771 Chenopodium quinoa HOM05D007841 ORTHO05D009919 1.6e-14 83.6 55 74.5
AT1G02160 Arabidopsis thaliana HOM05D007841 ORTHO05D009919 2.1e-14 83.2 59 74.6
CARHR000160 Cardamine hirsuta HOM05D007841 ORTHO05D009919 2.1e-14 83.2 59 74.6
Thhalv10009237m.g Eutrema salsugineum HOM05D007841 ORTHO05D009919 2.1e-14 83.2 59 74.6
Nn6g33742 Nelumbo nucifera HOM05D007841 ORTHO05D009919 2.1e-14 83.2 55 72.7
C05p00040 Brassica napus HOM05D007841 ORTHO05D009919 2.8e-14 82.8 59 74.6
BolC5t28791H Brassica oleracea HOM05D007841 ORTHO05D009919 2.8e-14 82.8 59 74.6
Carub.0001s0004 Capsella rubella HOM05D007841 ORTHO05D009919 2.8e-14 82.8 59 74.6
FvH4_7g09140 Fragaria vesca HOM05D007841 ORTHO05D009919 2.8e-14 82.8 58 70.7
FAN06G3108 Fragaria x ananassa HOM05D007841 ORTHO05D009919 2.8e-14 82.8 59 74.6
AL1G10060 Arabidopsis lyrata HOM05D007841 ORTHO05D009919 3.6e-14 82.4 59 74.6
PSO732G0215 Papaver somniferum HOM05D007841 ORTHO05D009919 4.7e-14 82.0 51 76.5
Os04g0665000 Oryza sativa ssp. japonica HOM05D007841 ORTHO05D009919 8.0e-14 81.3 58 75.9
Migut.N01723 Erythranthe guttata HOM05D007841 ORTHO05D009919 6.8e-13 78.2 47 76.6
Zm00001eb067220 Zea mays HOM05D007841 ORTHO05D009919 7.5e-12 74.7 58 69.0
unitig_22.g6702 Utricularia gibba HOM05D007841 ORTHO05D009919 2.2e-11 73.2 47 70.2
GSVIVG01018320001 Vitis vinifera HOM05D007841 ORTHO05D009919 6.4e-11 71.6 51 70.6
Actinidia05779 Actinidia chinensis HOM05D007841 ORTHO05D009919 2.7e-09 66.2 34 82.4
Pp3c22_2080 Physcomitrium patens HOM05D007841 ORTHO05D009919 4.6e-09 65.5 50 58.0
AagrBONN_evm.TU.Sc2ySwM_228.3132 Anthoceros agrestis HOM05D007841 ORTHO05D009919 1.5e-07 60.5 43 62.8
Mapoly0181s0011 Marchantia polymorpha HOM05D007841 ORTHO05D009919 2.8e-06 56.2 48 52.1


User provided reference genes

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